BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471526
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13635.1 | Symbols: | DNA glycosylase superfamily protein |... 1524 0.0
> AT1G13635.1 | Symbols: | DNA glycosylase superfamily protein
| chr1:4674247-4675851 FORWARD LENGTH=1004
Length=1004
Score = 1524 bits (825), Expect = 0.0
Identities = 933/985 (95%), Gaps = 7/985 (1%)
Strand=Plus/Plus
Query 1 GATGTACAAAGCAAGTCCTCAAAGAAGAGAGATTGTGGAGAAAAGCAAGAATGTAAGAGA 60
|||||| || ||||||||| |||||| ||||||||| ||||||||||||| |||||||||
Sbjct 1 GATGTATAAGGCAAGTCCTAAAAGAAAAGAGATTGTAGAGAAAAGCAAGAGTGTAAGAGA 60
Query 61 GAAGGAGACTAAGCAAAACTCAAATTTCTTTGCAAAACACTTAAAGAGAATTTACCCAAT 120
|||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 61 GAAGGAGATTAAACAAAACTCAAATTTCTTTGCCAAACACTTAAAGAGGATTTACCCAAT 120
Query 121 CACGCTTCAACGAAGCACTTCTTCTTCATTCTCAATCTCTTCTATATCTCTGTCACTCTC 180
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 121 CACGCTTCAACGAAGCACTTCTTCTTCATTTTCACTCTCTTCTATATCTCTATCACTCTC 180
Query 181 TCAGAACTCGACCGATTCTGTTTCCACGGATTCAAATTCGACGTTGGAACAAAAGATCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAGAACTCGACCGATTCTGTTTCCACGGATTCAAATTCGACGTTGGAACAAAAGATCTC 240
Query 241 TCTAGCACTCGGTTTAATCTCATCTCCCTACAGAAGAGAAACATTTGTTCCAAAAAGTAT 300
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 241 TCTGGCACTCGGTTTAATCTCATCTCCCCACAGAAGAGAAATATTTGTTCCAAAAAGTAT 300
Query 301 CCCGCAACAACTATGTCAGGATTTC-A-A-TAGTGATGAACCAAAGAGGTGCAATTGGAT 357
||| ||||||||||||||||||||| | | |||||||||||||||||||||||| |||||
Sbjct 301 CCCACAACAACTATGTCAGGATTTCAATAGTAGTGATGAACCAAAGAGGTGCAACTGGAT 360
Query 358 CACCAAGAAAAGTGATGAAGTCTACGTAACGTTTCATGACCAGCAGTGGGGAGTCCCTGC 417
||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 361 CACCAAGAAAAGTGACGAAGTCTACGTAATGTTTCATGACCAGCAATGGGGAGTCCCTGT 420
Query 418 CTATGATGATAACCTGCTTTTTGAGTTACTTGCGATGTCGGGGATGTTAATGGACTATAA 477
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 421 CTATGATGATAACCTGCTTTTTGAGTTCCTTGCCATGTCGGGGATGTTAATGGACTATAA 480
Query 478 TTGGACCGAGATTATAAAACGCAAAGAACTCTTTAGAGAGGCCTTTTGTGAGTTTGACCC 537
|||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 481 CTGGACCGAGATTCTAAAACGCAAAGAACACTTTAGAGAGGCATTTTGTGAGTTTGACCC 540
Query 538 AAATCTGGTAGCCAAAATGGGAGAGAAAGATATCACAGAAATTGCATCAAACAAAGCAAT 597
||||| ||| |||||||||||||||||||| ||| |||| ||||||||||| ||||||||
Sbjct 541 AAATCGGGTGGCCAAAATGGGAGAGAAAGAGATCGCAGAGATTGCATCAAATAAAGCAAT 600
Query 598 AATGTTACAAGAGAGTAGAGTAAGGTGTATAGTCGACAATGCCAAATGCATAACCAAGGT 657
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATGTTACAAGAGAGTAGAGTCAGGTGTATAGTCGACAATGCCAAATGCATAACCAAGGT 660
Query 658 GGTCAAGGAATTTGGATCATTCAGCAGCTTCATTTGGGGGTTTATGGATTACAAACCTAT 717
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 GGTCAATGAATTTGGATCATTCAGCAGCTTCGTTTGGGGGTTTATGGATTACAAACCTAT 720
Query 718 CATTAACAAATTCAAGTATTCAAGAAATGTACCATTGAGATCTCCCAAGGCTGAGATAAT 777
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 CATTAACAAATTCAAGTATTCAAGAAATGTACCATTGAGATCTCCTAAGGCTGAGATAAT 780
Query 778 TAGCAAAGATATGATCAAACGAGGGTTTCGATTTGTCGGTCCAGTGATCGTACATTCGTT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TAGCAAAGATATGATCAAACGAGGGTTTCGATTTGTCGGTCCAGTGATCGTACATTCGTT 840
Query 838 CATGCAGGCTGCAGGGTTAACAATAGATCATCTCGTCGATTGTTTTAGACATGGTGATTG 897
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 841 CATGCAGGCTGCAGGGTTAACAATTGATCACCTCGTCGATTGTTTTAGACATGGTGATTG 900
Query 898 TGTGAGCCTCGCTGAGAGGCCATGGAGGCATATATGATAT-TGGGTTGGCGAGAGAGTCT 956
|||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||
Sbjct 901 TGTGAGCCTCGCTGAGAGGCCATGGAGGCATATATGATATAT---TTGGATAGAGATTCT 957
Query 957 AATCCAGTTTCTCTTTAAAACATAT 981
||||||||||| ||||||||||||
Sbjct 958 AATCCAGTTTCGGTTTAAAACATAT 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5