BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471529
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693289-4694410 ... 1219 0.0
> AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693289-4694410
FORWARD LENGTH=856
Length=856
Score = 1219 bits (660), Expect = 0.0
Identities = 754/799 (94%), Gaps = 7/799 (1%)
Strand=Plus/Plus
Query 1 GAGAAGGAATTCGGAGAAAGAGATTATTAACAATGGCGGCAGTTCAACAGCAACAAGCGA 60
||||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 61 GAGAAGGAATTCGAAGAAACAGATT-TCAACAATGGCGGCAGTTCAACAGCAACAAGCGA 119
Query 61 TGCAGAAGAACACTTTATACGTAGGAGGTTTAGCTGATGAGGTTAACGAATCGATCCTTC 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 TGCAGAAGAACACTTTATACGTAGGAGGTTTAGCTGATGAAGTTAACGAATCGATCCTTC 179
Query 121 ACGCTGCGTTTATACCTTTCGGCGATATCAAAGACGTGAAGACGCCGTTGGACCAAGCGA 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACGCCGCGTTTATACCTTTCGGCGATATCAAAGACGTGAAGACGCCGTTGGACCAAGCGA 239
Query 181 ATCAGAAACACAGATCCTTCGGATTCGTCACTTTTCTTGAGAGAGAAGACGCTTCTGCAG 240
||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 240 ATCAGAAGCATAGATCCTTCGGATTCGTTACTTTTCTTGAGAGAGAAGACGCTTCTGCTG 299
Query 241 CCATGGATAATATGGATGGTGCTGAGCTTTATGGTCGTGTTCTCACTGTTAATTATGCTC 300
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTATGGATAATATGGACGGTGCTGAGCTTTATGGTCGTGTTCTCACTGTTAATTATGCTC 359
Query 301 TCCCTGAGAAAATCAAGGGTGGTGAACAGGGTTGGGCTGCTCATCCACTTTGGGCAGATG 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCCTGAGAAAATTAAGGGTGGTGAACAGGGTTGGGCTGCTCATCCACTTTGGGCAGATG 419
Query 361 CAGACACATGGTTTGAGAGGCAGCAACAGGAAAAGGAGATGCTGAAGATGCAAGCTGAGA 420
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 420 CAGACACATGGTTTGAGAGGCAGCAACAGGAGAAGGAGATTCTGAAGATGCAAGCTGAGA 479
Query 421 ACAAGGCTGCCATGGAGACTGCTGAGGAACTTCACAGGAAGAAATTGGCGCAAGATCGAC 480
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 480 ACAAGGCTGCCATGGAGACTGCTGAGGAGCTTCACAGGAAGAAATTGGCGGAAGATCGAC 539
Query 481 AAGGCGAGTTGGAGGAAGATACAGAGACCATAGATGATCCTATGGCCAGAGCCGAGGCTG 540
|||| ||| |||||||||||||||| |||| | ||||||||||||||||||| |||||||
Sbjct 540 AAGGAGAGATGGAGGAAGATACAGATACCAAAAATGATCCTATGGCCAGAGCAGAGGCTG 599
Query 541 ATGCTCTAAGTCACGGCGATGCCTAATGAACGTAAGCATTACCGGTTTCTCTCATGCAC- 599
|||||||||||||||||||||||||||||| |||||| ||||||| |||||| ||||||
Sbjct 600 ATGCTCTAAGTCACGGCGATGCCTAATGAAAGTAAGCGTTACCGGATTCTCTTATGCACC 659
Query 600 TGTAGGC-TGTAGGATAACAAGTACGTTTTCGCCTGAGTGTGTAACACTGTCACTATCAC 658
| | | | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 T-T-GTCCTGTAGGATAACAAGTATGTTTTCGCCTGAGTGTGTAACACTGTCACTATCAC 717
Query 659 CTCATAGAGTTTTTGAGGTTAGATTGTTTCTTGAAGTTGCTGAACATGTTATTGTTATAG 718
|||||||||||||||||||||||||||||||||| |||| | | |||||||||| |||||
Sbjct 718 CTCATAGAGTTTTTGAGGTTAGATTGTTTCTTGAGGTTGATTACCATGTTATTGCTATAG 777
Query 719 TTAATAGATTTGGTAGTTTGGTGAAACTTGCGTGGTTAGAAAATTAAAAGTCATGTTT-T 777
||||||||||||||||||||||||||||||| || |||||||| ||| |||||||| | |
Sbjct 778 TTAATAGATTTGGTAGTTTGGTGAAACTTGCTTGCTTAGAAAAGTAAGAGTCATGTATCT 837
Query 778 CAAACCGGATGCTCTTCAT 796
||||||||||||||||||
Sbjct 838 -AAACCGGATGCTCTTCAT 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38730527337
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5