BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471531
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13710.1 | Symbols: CYP78A5, KLU | cytochrome P450, family 7... 2804 0.0
AT1G01190.1 | Symbols: CYP78A8 | cytochrome P450, family 78, su... 80.5 5e-14
> AT1G13710.1 | Symbols: CYP78A5, KLU | cytochrome P450, family
78, subfamily A, polypeptide 5 | chr1:4702725-4704657 REVERSE
LENGTH=1826
Length=1826
Score = 2804 bits (1518), Expect = 0.0
Identities = 1703/1794 (95%), Gaps = 6/1794 (0%)
Strand=Plus/Plus
Query 1 CTCTCTCTCCTTCCATAACTCAGCCTGAGATGTCTCCGGAAGCTTACGTTCTGTTCTTTA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37 CTCTCTCTCCTGCCATAACTCAGCCTGAGATGTCTCCGGAAGCTTACGTTCTGTTCTTTA 96
Query 61 ACAGTTTTAACCTCGTAACCTTCGAAGCATTTGCTTCGGTTTCTCTTTTCATAGCCACAG 120
|||||||||||||||||||||||||||| |||||||| || || ||| ||||||||||||
Sbjct 97 ACAGTTTTAACCTCGTAACCTTCGAAGCCTTTGCTTCAGTCTCACTTATCATAGCCACAG 156
Query 121 TTGCTTTCTTTTTCTCACCAGGTGGGCTCGCATGGGCCTGGACCGGGTCATCCAAGAGCC 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 157 TTGCTTTCTTGCTCTCACCAGGTGGGCTCGCATGGGCCTGGACCGGGTCATCCAAGAGTC 216
Query 181 GGGTTTCAATCCCGGGACCATCTGGTTCTCTTTCCGTCCTCTCCGGTTCTAATCCCCACC 240
||||||| || || |||||||||||||||||||||||| ||||||| || ||||||||||
Sbjct 217 GGGTTTCGATTCCAGGACCATCTGGTTCTCTTTCCGTCTTCTCCGGCTCCAATCCCCACC 276
Query 241 GTGTTCTCGCCGCTCTTGCAAAACGCTTCAAGGCCTCTCCGTTGATGGCGTTTTCAGTTG 300
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 277 GTGTTCTCGCCGCTCTTGCTAAACGCTTCAAGGCCTCTCCGTTGATGGCGTTCTCAGTTG 336
Query 301 GGTTTTCGCGTTTCGTTATCTCTAGTGAACCGGAGACGGCTAAAGAGATTTTGAACAGCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 337 GGTTTTCGCGTTTCGTTATCTCTAGTGAACCGGAGACGGCTAAAGAGATTTTGAGCAGCT 396
Query 361 CTGCTTTTGCGGACCGGCCGGTTAAGGAGTCAGCTTACGAACTTCTGTTCCACCGTGCCA 420
|||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct 397 CTGCTTTTGCTGACCGGCCGGTTAAGGAGTCAGCTTACGAGCTTTTGTTTCACCGTGCCA 456
Query 421 TGGGATTCGCACCGTATGGTGAGTATTGGAGGAATCTGAGGAGAATCTCCTCCACTCATC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 TGGGATTCGCACCGTATGGTGAGTATTGGAGGAATCTGAGGAGAATCTCCTCCACTCATC 516
Query 481 TTTTTAGTCCGAGAAGAATCGCAAGTTTCGAAAGTGTTAGAGTTGGGATCGGTATGAAGA 540
|||| ||||| ||||||||||| ||||| || ||||||||||||| |||||||||||||
Sbjct 517 TTTTCAGTCCAAGAAGAATCGCGAGTTTTGAGGGTGTTAGAGTTGGCATCGGTATGAAGA 576
Query 541 TGGTGAAGAAGATTAAGAGTGTTGTTATGTCTGATGCTGGTGGTGAAGTTGAAGTGAAAA 600
|||| ||||||||||| || |||||| |||||||||| |||||||||||||||||||||
Sbjct 577 TGGTCAAGAAGATTAAAAGCCTTGTTACGTCTGATGCTTGTGGTGAAGTTGAAGTGAAAA 636
Query 601 AGATCGTTCACTTTGGTTCTTTGAATAATGTAATGACGACTGTGTTCGGTGAAAGTTACG 660
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 637 AGATCGTTCACTTTGGTTCTTTGAATAATGTAATGACGACAGTGTTTGGTGAAAGCTACG 696
Query 661 ATTTTGATGAAGTTAAAGGATCTGGATGTTTTCTGGAGAGGCTTGTGAGTGAAGGTTATG 720
|||||||||||||||| ||| || |||||| |||||||||| ||||||||||| || |
Sbjct 697 ATTTTGATGAAGTTAATGGAAAAGGGTGTTTTTTGGAGAGGCTGGTGAGTGAAGGCTACG 756
Query 721 AGTTGCTTGGGATATTTAACTGGAGTGATCACTTTTGGGTTCTTCGTTGGTTTGACTTCC 780
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 757 AGTTGCTTGGGATTTTTAACTGGAGTGATCACTTTTGGTTTCTTCGTTGGTTTGACTTCC 816
Query 781 AAGGAGTGAGGAAGAGGTGTAGAGCTTTGGTCTCTGAAGTCAACACTTTTGTCGGCGGAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 AAGGAGTGAGGAAGAGGTGTAGAGCTTTGGTCTCTGAAGTCAACACTTTTGTCGGCGGAA 876
Query 841 TAATTGAAAAACACAAGATGAAGAAGAGCAATAATCTCAAGGGAGAGGAAAATGACTTCG 900
||||||| |||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 877 TAATTGAGAAACACAAGATGAAGAAGGGTAATAATCTCAATGGAGAGGAAAATGACTTCG 936
Query 901 TTGATGTCTTGCTTGGCTTGCAAAAGGATGAAAAGCTGTCTGATTCTGACATGATTGCTG 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 937 TTGATGTCTTGCTTGGCTTGCAAAAGGATGAAAAGTTGTCTGATTCTGACATGATTGCTG 996
Query 961 TTCTTTGGGAAATGATATTTAGAGGGACAGATACAGTTGCGATTCTAGTGGAATGGGTGC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 TTCTTTGGGAAATGATATTTAGAGGGACAGATACAGTTGCGATTCTAGTGGAATGGGTGC 1056
Query 1021 TTGCAAGAATGGTTTTGCATCAAGACATCCAAGATAAACTCTACAAAGAGATAGCTTCTG 1080
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1057 TTGCAAGAATGGTTTTGCATCAAGACATCCAAGATAAACTCTACAGAGAGATAGCTTCTG 1116
Query 1081 CTACAAGTAACAATACTAGATCCTTGTCTGATTCCGACATCCCAGAACTGCCGTACCTTC 1140
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1117 CTACAAGTAACAATATTAGATCCTTGTCTGATTCCGACATCCCAAAACTGCCGTACCTTC 1176
Query 1141 AAGCTATTGTCAAAGAAACCCTAAGGCTCCACCCACCTGGACCACTCCTCTCCTGGGCCC 1200
|||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| |
Sbjct 1177 AAGCTATTGTCAAAGAAACCCTAAGGCTCCACCCCCCTGGTCCACTTCTCTCTTGGGCTC 1236
Query 1201 GTCTCGCTATCCACGATGTCCACGTAGGTCCTAACCTTGTCCCCGCGGGAACCATAGCTA 1260
||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||
Sbjct 1237 GTCTCGCTATCCATGACGTCCACGTAGGTCCTAACCTTGTCCCTGCTGGAACCATAGCTA 1296
Query 1261 TGGTCAACATGTGGTCCATCACACACAACGCTAAAATCTGGACCGACCCTGAAGCGTTTA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 TGGTCAACATGTGGTCCATCACACACAACGCTAAAATCTGGACCGACCCTGAAGCGTTTA 1356
Query 1321 AGCCTGAGAGGTTCATTGGTAGTGAGGATATGAGCATCATGGGCTCGGATCTTAGATTGG 1380
|||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1357 TGCCTGAAAGGTTCATT---AGTGAGGATGTGAGCATCATGGGCTCGGATCTTAGATTGG 1413
Query 1381 CTCCATTCGGATCGGGTCGTCGAGTTTGCCCCGGTAAAGCAATGGGTCTAGCTACTGTTC 1440
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1414 CTCCATTCGGATCCGGTCGTCGGGTTTGTCCCGGTAAAGCAATGGGTCTAGCTACTGTTC 1473
Query 1441 ATCTATGGATTGCTCAATTGATTCAGAATTTCGAATGGGTTAAGGGTTCTTGTGATGTTG 1500
|||| ||||||| |||| | ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1474 ATCTCTGGATTGGTCAACTAATTCAGAATTTTGAATGGGTGAAGGGTTCTTGTGATGTTG 1533
Query 1501 AGCTCGCTGAGGTTCTCAAGCTGTCTATGGAGATGAAGAATCCGTTGAAGTGCAAGGCTG 1560
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 AGCTCGCTGAGGTTCTGAAGCTGTCTATGGAGATGAAGAATCCGTTGAAGTGCAAGGCTG 1593
Query 1561 TTCCAAGGAATGTTGGTTTCGCTTGATGGATTATCGTGTCGGGGACTTGTTTAATGAACT 1620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1594 TTCCAAGGAATGTTGGTTTCGCTTGATGGATTATCGTGTCGGGGACTTGTTTAATGAAGT 1653
Query 1621 ATGGGTAGTACTAATTAATAAAATTAATAATAATTATGG-TCGGGAAGGA-GTTAGGGTT 1678
|||| ||||||| |||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 1654 ATGGCTAGTACTTATTAATAAAATTAATAATAATTATGGCT-GGGAAGGAAGTTAGGGTT 1712
Query 1679 TTGGCACGTTGGTCGAACTTCTTTAGGGTTTTGGTGTGAGTTTTCTATTTTGCTTTGTGT 1738
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1713 TTGGCACGTTGGTCGAACTTCTTTAGGGTTTTGGTGTAAGTTTTCTATTTTGCTTTGTGA 1772
Query 1739 TGCTTCATGATGTTATCGCATCCCCTCGGTTTGCTTTTCAATGATTTTCTATCT 1792
||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1773 TGCTTCATGATGTTATCGCATCCCCTCGGTTTGCTTTTCAATGTTTTTCTATCT 1826
> AT1G01190.1 | Symbols: CYP78A8 | cytochrome P450, family 78,
subfamily A, polypeptide 8 | chr1:83045-84864 REVERSE LENGTH=1608
Length=1608
Score = 80.5 bits (43), Expect = 5e-14
Identities = 78/95 (82%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 948 GACATGATTGCTGTTCTTTGGGAAATGATATTTAGAGGGA-CAGATACAGTTGCGATTCT 1006
|||||| |||||||||||||||||||||||||||| |||| | || || |||||| || |
Sbjct 961 GACATGGTTGCTGTTCTTTGGGAAATGATATTTAG-GGGAACGGACACTGTTGCGGTTTT 1019
Query 1007 AGTGGAATGGGTGCTTGCAAGAATGGTTTTGCATC 1041
|| || |||||||| || || || || ||||||
Sbjct 1020 GGTCGAGTGGGTGCTAGCGAGGATTGTGATGCATC 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88654162470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5