BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471532
Length=1730
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13730.1 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 2209 0.0
> AT1G13730.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr1:4709824-4712550 FORWARD LENGTH=1773
Length=1773
Score = 2209 bits (1196), Expect = 0.0
Identities = 1560/1725 (90%), Gaps = 67/1725 (4%)
Strand=Plus/Plus
Query 31 CAAAAATCCCAATTTCTTCTCGTCGGAGATTTCTAAGTAAAACCCTAGAACTAACCA-T- 88
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 89 CAACAATCCCAATTTCTCCTCGTCGGAGATTTCTAAGTAAAACCCTAGAACTAACCATTA 148
Query 89 tatata-ta-aat----atatatTCA----TCCCTC-CCCTGTCTCCTACTTTGtcttct 137
|||||| || ||| ||||||||| |||||| |||||| || |||| ||||||||
Sbjct 149 TATATATTATAATACAAATATATTCATCCCTCCCTCTCCCTGTGTCTTACTCTGTCTTCT 208
Query 138 cttcgaactcatctgagattcttgattctgcttctcttcttatcttctcCCTAGGTAGAG 197
||||||||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||
Sbjct 209 CTTCGAACTGATCTGAGATTTTTGATTCTGCTTCTCTTCTCATCTTCTCCCAAGGTAGAG 268
Query 198 ATGGCACTTGAATCAAATGCTCCTGTGGTGGATCCAAACACTATTGGCAATTCGTTTGTT 257
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 269 ATGGCACTTGAATCAAATGCTCCAGTGGTGGACCCAAACACTATTGGCAATTCTTTTGTT 328
Query 258 GAGCAGTACTACAACCTCTTGTATAAGTCACCAGCTG-TAGTGCATCAGTTTTATCTCGA 316
||| | ||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 329 GAGAAATACTACAACCTCTTGTATAAGTCACCATC-GCAAGTGCATCAGTTTTATCTCGA 387
Query 317 CGATAGTGTTTTGGGCCGCCCCGGTGCTGATGGAGAGATGGTTTCCGTCAAATCCTTAAA 376
|||||||||||| ||||| || ||| ||||||||||||||||||| ||||||||||| ||
Sbjct 388 CGATAGTGTTTTAGGCCGTCCTGGTTCTGATGGAGAGATGGTTTCTGTCAAATCCTTGAA 447
Query 377 AGCTATCAATGAGCAGATTATGTCCTTTGATTACAAAATCTCAAAGATTCAGATTTTGAC 436
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 448 AGCTATCAATGAGCAGATTATGTCCTTCGATTACGAAATCTCAAAGATTCAGATTTTGAC 507
Query 437 TGCTGATTCCCAAGCATCTTACAAGAATGGAGTTGTGACTCTAGTCACGGGTTTACTGAC 496
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||
Sbjct 508 TGCTGATTCCCAAGCATCTTACATGAATGGAGTTGTGACTCTAGTCACAGGTTTACTAAC 567
Query 497 CGTGAAAGAAGGGG-AGAGAATGAGATTTTCTCAATCGTTTTTCCTTGTGCCGCAT-AAT 554
|||||||| ||||| | ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 568 CGTGAAAG-AGGGGCAAAGAATGAGATTTTCTCAATCGTTTTTCCTTGTGCCGC-TGAAT 625
Query 555 GGAAGCTACTTCGTGCTGAACGATGTCTTTAGGTATGTTGCTGATGAGATTGTTGAACCA 614
|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 GGAAGCTATTTCGTTCTCAACGATGTCTTTAGGTATGTTGCTGATGAGATTGTTGAACCA 685
Query 615 GAAGCTAACAAGAAAGAGGTCGAGGAGGTGATTCCTCAAATGGTCCAATCAACAGTCACT 674
||||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||
Sbjct 686 GAAGCTAACAAGAAAGAAGTCGAGGAGGTTATTCCTCAAGTGGTCCAACCAACAG----- 740
Query 675 ATTTTGGCAGAGCCGGCGAATGAAGTTGCAGAGCCAGTTACTATCCCTAGTCAACAACCC 734
| || || | | |||||||||||||||| ||||||||||||| |||||||||
Sbjct 741 A-----GC--AG--GTAG-ATGAAGTTGCAGAGCCGGTTACTATCCCTACCCAACAACCC 790
Query 735 GCGGCAAAACAGACTACTGAAAATATAGTGAAGAAACCAGAAAGAGCTGTAGCAAATGGA 794
| ||| |||||||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 791 GAGGCGAAACAGACAACCGAAAATACAGTGAAGAAACCAGAAAGAGCTGTAGCAAATGGA 850
Query 795 CACCCCAAAACCCAGGAGGAAAAAGTTGTGAACGATAAAAGCAATGCTGTGGATGCTCCC 854
|| |||||||| |||||||| || |||||||||||||||||||||| ||| |||||||||
Sbjct 851 CATCCCAAAACACAGGAGGATAATGTTGTGAACGATAAAAGCAATGGTGTTGATGCTCCC 910
Query 855 AAGAAATCATATGCAGGA-ATTGTTCAATCTTTGGCTCAAAACGGTGCTACATTCAATGT 913
|||||||||| |||| | ||||| ||| |||||||||||||||||||||||||||||
Sbjct 911 AAGAAATCATTTGCA-CATATTGTCCAAGATTTGGCTCAAAACGGTGCTACATTCAATGC 969
Query 914 CAAAGCTCCTCCTGCAAAGCCTAAGTCTAAGCCTGTTACAAAGCCGAGTGCTGCTCCTGA 973
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 970 CAAAGCTTCTCCTGCAAAGCCTAAGTCTAAGCCTGTTACAAAGCCGAGTGCTGCTCGTGA 1029
Query 974 ATCCAAAGCTCCTTCGCCGGTTTCTGAACACTCTTCTGCTGAAACAGTCGACCAAC---C 1030
||||||||||||| | || |||||||||||||||||||||| |||| ||||||||| |
Sbjct 1030 ATCCAAAGCTCCTGCTCCTGTTTCTGAACACTCTTCTGCTGCAACAATCGACCAACAAGC 1089
Query 1031 --AGG-TTGTACGATATTTGTTGCCAACTTGCCCATGGACGCGACACCAGAGCAACTCAA 1087
||| || ||||||||||||||||||||||| ||||||||| |||||||||||||| ||
Sbjct 1090 TGAGGGTTATACGATATTTGTTGCCAACTTGCTCATGGACGCTACACCAGAGCAACTAAA 1149
Query 1088 TGAAACCTTCAAAGGTTTTGGATCTATTACGAAAGATGGTATCCAAGTGAGAAGTTACAG 1147
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1150 TGAAACATTCAAAGGTTTTGGAGCTATTACGAAAGATGGTATCCAAGTGAGAAGTTACAG 1209
Query 1148 GCTGAAGGGAAACTGTTTCGGGTTTGTGACATTCGAATCGGCTGAAGCTGTGAAATTGGT 1207
||| |||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||
Sbjct 1210 GCTCAAGGGAAACTGTTTTGGCTTTGTGACATTCGCATCTGCTGAAGCTGTGAAATTGGT 1269
Query 1208 CCTCCAGGCTCACAAAGGCTTAGCCATCAGAATCGGAAACCGCAA-AGTTTCAATAGAAG 1266
||||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||
Sbjct 1270 CCTCCAGGCTCACAAAGAATCAGCCATCAGAATCGGAAACCG-AAGAGTTTCAATAGAAG 1328
Query 1267 AGAAACGAGGCAACAACGATAATGGAAGACCCTCAACGCGAAATGGAGGTTATAGGAACG 1326
|||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 1329 AGAAACGAGGCAACAACGATAATGGAAGACCCGCAATGCGAAACGGAGGTTATAGGAACG 1388
Query 1327 AGAACGGTTACAGAAACGATGGGGT-TAGGCCTAGAGGCAACGGTTTCAATGGAGGTCGA 1385
| ||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||||
Sbjct 1389 ACAACGGTTACAGAAACGATGGG-TATAGGCCTCGAGGCAACGGTTCCAATGGAGGTCGA 1447
Query 1386 GGCCATGGAAGAAATGGATCCGAGAGACGGGGTGAATCACGCAACGGTGAGGCTTACAAT 1445
||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 1448 GGCTATGGAAGAAATGGATCTGAGAGACGGGGTGAATCACGCAATGGTGAGGCTCACAAT 1507
Query 1446 GGTGATGGCAAAGTTCATCAGAACGGTACGGTAAAAGCTGGCCGTGAAAATGCTCAATCC 1505
||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 1508 GGTGATGGCAAAGTTCATCAGAACGGTACGGTAGAAGCTAGCCGTTAAAATACTCAATCC 1567
Query 1506 AGAGGCTAAACAAGTTTGAAGTCATTTTCTTAAACTCTGATGTGTTCTTATTGTTCATTT 1565
||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||
Sbjct 1568 AGAGGCTAAACAAGTTTGAAGTCATTTG-TTAAACTCTGTTGTGTTATTGTTGTTCATTT 1626
Query 1566 GAAAATGAGAATCTGAAGTTTTATAGGAAGAGATAGTGAGAGGGACagagagagagagag 1625
|||| |||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct 1627 GAAATTGAG-----G---TTTTATAGGAAGAGATAGTGAGAGGGA--GAGAGAGAGA--- 1673
Query 1626 aTTAGAAGTTCTTTTGGAGTAGGTTTATCTCTTTAGGTGATAATCCCTTCTTTCATTTGA 1685
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1674 -TTAGAAGTTCTTTTGGAGTAGGTTTATCTCTT-AGGTGATAATCCCTTCTTT-----GA 1726
Query 1686 GATTTTGTTTGGGATAACAAAAATTTGATGATTACTTTTACTTTC 1730
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1727 GATTTTGTTTGGGATAACAAAAATTTGATGATTACTTTTACCTTC 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85541728680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5