BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471533
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 | chr1... 1179 0.0
> AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 | chr1:4713674-4715407
FORWARD LENGTH=1591
Length=1591
Score = 1179 bits (638), Expect = 0.0
Identities = 789/856 (92%), Gaps = 33/856 (4%)
Strand=Plus/Plus
Query 1 ttctctctcttttcctctgatgtccccaaagggtcttcttcttcttcttcgtatctgctc 60
|||||||||||||||||| |||| || |||||| |||||||| | || || |||||||
Sbjct 1 TTCTCTCTCTTTTCCTCTAATGT-CCAAAAGGG---TCTTCTTC-T-TT-GTCTCTGCTC 53
Query 61 ttcaccttcaattgtaacctcttcgtcttcttcgccgtctctGGTAATAACTCCGGCGAG 120
||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 54 TTCACTTTCAATTATAACCTCTTCGTCTTCTTCGCCGTCTCTGGTATTAACTCCGGCGAG 113
Query 121 TCttttttttttttttttttACTTTGATGTGAATTTGCAAAATTCACTGTTTAATTCATG 180
|||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||
Sbjct 114 ----TTTTTTTTTTTTTTTTACTTTGATATGAATTTGCGAGATTTACTGTTTAATTCATG 169
Query 181 ATAACAATTTTGGATTTTTGATCGGATGTGAAATTCAGAG-----------T-TT--T-- 224
|| ||||||||||||||||||||||||||||||||||||| | || |
Sbjct 170 ATGACAATTTTGGATTTTTGATCGGATGTGAAATTCAGAGTTTTTCATTCTTCTTCATCA 229
Query 225 TC--ATAACAAAGGAGAAACAAAAC-AAAAA-TCtttttttCTTTC-TTCTATTGTTTCG 279
|| ||||||||| ||||||||||| ||||| | |||||||||||| |||||||||||||
Sbjct 230 TCTTATAACAAAGAAGAAACAAAACAAAAAACTTTTTTTTTCTTTCTTTCTATTGTTTCG 289
Query 280 GAATCTATGGGTGAAGCAAGCAGACAACTAAGGGCATGGAACAGAGAAATGACGGTTACG 339
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 290 GAATCTATGGGTGAAGCAAGCAGACAACAAAGGGCATGGAACAGAGAAATGACGGTTACG 349
Query 340 ACAAATCTTTCTTTAGACATAGACAAATACCCGAGAGATCTGTTACGAGGTTTCATGTCT 399
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 350 ACAAATCTTTCTCTAGACATAGATAAATACCCGAGAGATCTGTTACGAGGTTTCATGTCT 409
Query 400 GAAAACGGCGGTGGAAGAGCCTTTCACGGCGGAGAATCAGGCTGCGATGATGAGAGTGCC 459
||||||||||||||||||| |||||||||||||||| || |||||||||||||||| |
Sbjct 410 GAAAACGGCGGTGGAAGAGTCTTTCACGGCGGAGAAACAAACTGCGATGATGAGAGTACG 469
Query 460 ATTGAGCTGAATCTTGGTTTGTCTTTAGGAGGTCGATTCGGAGTAGACAAGACTCCGAGG 519
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 470 ATTGAGCTCAATCTTGGTTTGTCTTTAGGTGGTAGATTCGGAGTAGACAAGACTCCGAGG 529
Query 520 AAGCTGAAACGATCTTCTTCTGTTTTGGACACTGTACCATTTAACGATTCAACGGTGGCT 579
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 530 AAGCTGAAACGATCTTCTTCTGTTTTGGACACTGTACCATTCAACGATTCAACTGTGGCT 589
Query 580 GAGCCTGAGAATTACACGGTGGGTTTAGAGAGAACGACGTCGTTACCGGCGGAGATGGAA 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GAGCCTGAGAATTACACGGTGGGTTTAGAGAGAACGACGTCGTTACCGGCGGAGATGGAA 649
Query 640 GAGGAATGGAGGAAAAGGAAAGAGATGCAGTCACTGAG-AGAATGGAAGCTAAGAGAAGG 698
||||||||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 650 GAGGAATGGAGGAAAAGGAAAGAGATGCAATCGCTTAGGAGAATGGAAGCTAAGAGAAGG 709
Query 699 AGATGTGAGAAACAGAGTTTCAGAGTTGGGAATTCTGATGACCAAACGGTGTCCTTTGAG 758
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 710 AGATGTGAGAAACAGAGTTTCAGAGTTGGGAATTCTGATGACCAAACGGTGTCGTTTGAG 769
Query 759 AATGAGAGATGGGTTACTGCGAGTAAGAGTGGTTTCTTGCAGAGACATTTGGTTTCTTCT 818
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 770 AATGAGAGATGGGTTACTGCGAGTAAAAGTGGCTTCTTGCAGAGACATTTGGTTTCTTCT 829
Query 819 AATAGACAAGTGTGTG 834
||||||||||| ||||
Sbjct 830 AATAGACAAGTCTGTG 845
Score = 841 bits (455), Expect = 0.0
Identities = 593/654 (91%), Gaps = 31/654 (5%)
Strand=Plus/Plus
Query 874 AGCTGCAATGATGAAAGAAGCCCGAAGATCGTGACAGGATGTTCATCGAACAGCGGAAGC 933
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 938 AGCTGCAATGATGAAAGAAGCCCGAAAATCGTGGCAGGATGTTCATCGAACAGCGGAAGC 997
Query 934 CAGGGAACAGAGAAACCGAGTGTGACTGGAGCCAACAAAGTGAATGAGAAT--G-A-G-- 987
||||||||||||| ||||||||||||| ||||||||||||||||||||||| | | |
Sbjct 998 CAGGGAACAGAGAGACCGAGTGTGACTAGAGCCAACAAAGTGAATGAGAATGAGAATGAA 1057
Query 988 AAAGGAGTGAGGAGAGAGGACTCGGTGGTTAGGAAAGGAAAAGGGATGGCTACGTCTACT 1047
||| ||||||| || || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1058 AAAAGAGTGAGAAGTGAAGACTCGGTGGATAGGAAAGGAAAAGGGATGGCTACGTCTACT 1117
Query 1048 GGTTTGGTTGACATGCCTTGTGTGTTTACGAAAGGGGACGGGCCAAACGGAAGACGGGTT 1107
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1118 GGTTTGGTTGATATGCCTTGTGTGTTTACTAAAGGGGACGGGCCAAACGGAAGACGGGTT 1177
Query 1108 GACGGGATTTTGTACAAGTATGGAAAAGGAGAGGAAGTGAGGATAATGTGCATTTGCCAC 1167
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 GATGGGATTCTGTACAAGTATGGAAAAGGAGAGGAAGTGAGGATAATGTGCATTTGCCAT 1237
Query 1168 GGTAGTTTCTTGACACCAGCTGAGTTTGTTAAACATGGTGGCGGAGGAGAAGTGGATCGT 1227
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1238 GGTAGTTTCTTGACACCAGCTGAGTTTGTTAAACATGGTGGTGGTGGAGATGTGGATCGT 1297
Query 1228 CCTCTACGGCATATCGTTGTCAACACTTCTTCTTCGACCTTTTAAATAGAAGAATCGGTA 1287
||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1298 CCTCTTCGGCATATCGTTGTCAACACCTCTTCTTCGACCTTTTAAATCGAAGAATCGGTG 1357
Query 1288 AAGAAACCGGA-GG-tcttttgttctttgtttcattttt---cttgttgttttatctttt 1342
||||||||||| || |||| |||||| |||||||||||| ||||||||||||||||||
Sbjct 1358 AAGAAACCGGAAGGGTCTTGTGTTCTCTGTTTCATTTTTTTTCTTGTTGTTTTATCTTTT 1417
Query 1343 ggatctcta-g-tttttgGCTATAAGAATGAATGCCAAATC-TCAA-TCTTGATGAAGAT 1398
|||||||| | ||||||||||||| ||||||||||||| | |||| |||||||||||||
Sbjct 1418 GGATCTCTCTGGTTTTTGGCTATAAAAATGAATGCCAAAACCTCAAATCTTGATGAAGAT 1477
Query 1399 TAAGATTCTCATGTT-T-T--G-T---------G--AACATGAAAGTATCATCATCAAAT 1442
|||||||||||||| | | | | | |||||||||||||||||||| |||
Sbjct 1478 CAAGATTCTCATGTTGTCTTAGGTCTAATACTTGTGAACATGAAAGTATCATCATCGAAT 1537
Query 1443 GATTCTTTCTCAAGCTCTCGCGTTTAATATAAGGCCTCTCTGCAAAGTGCGTAT 1496
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1538 GATTCTTTCTCGAGCTCTCGCGTTTAATATAAGTCCTCTCTGCAAAGTGCGTAT 1591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73794801150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5