BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471533 Length=1496 Score E Sequences producing significant alignments: (Bits) Value AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 | chr1... 1179 0.0 > AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 | chr1:4713674-4715407 FORWARD LENGTH=1591 Length=1591 Score = 1179 bits (638), Expect = 0.0 Identities = 789/856 (92%), Gaps = 33/856 (4%) Strand=Plus/Plus Query 1 ttctctctcttttcctctgatgtccccaaagggtcttcttcttcttcttcgtatctgctc 60 |||||||||||||||||| |||| || |||||| |||||||| | || || ||||||| Sbjct 1 TTCTCTCTCTTTTCCTCTAATGT-CCAAAAGGG---TCTTCTTC-T-TT-GTCTCTGCTC 53 Query 61 ttcaccttcaattgtaacctcttcgtcttcttcgccgtctctGGTAATAACTCCGGCGAG 120 ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 54 TTCACTTTCAATTATAACCTCTTCGTCTTCTTCGCCGTCTCTGGTATTAACTCCGGCGAG 113 Query 121 TCttttttttttttttttttACTTTGATGTGAATTTGCAAAATTCACTGTTTAATTCATG 180 |||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||| Sbjct 114 ----TTTTTTTTTTTTTTTTACTTTGATATGAATTTGCGAGATTTACTGTTTAATTCATG 169 Query 181 ATAACAATTTTGGATTTTTGATCGGATGTGAAATTCAGAG-----------T-TT--T-- 224 || ||||||||||||||||||||||||||||||||||||| | || | Sbjct 170 ATGACAATTTTGGATTTTTGATCGGATGTGAAATTCAGAGTTTTTCATTCTTCTTCATCA 229 Query 225 TC--ATAACAAAGGAGAAACAAAAC-AAAAA-TCtttttttCTTTC-TTCTATTGTTTCG 279 || ||||||||| ||||||||||| ||||| | |||||||||||| ||||||||||||| Sbjct 230 TCTTATAACAAAGAAGAAACAAAACAAAAAACTTTTTTTTTCTTTCTTTCTATTGTTTCG 289 Query 280 GAATCTATGGGTGAAGCAAGCAGACAACTAAGGGCATGGAACAGAGAAATGACGGTTACG 339 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 290 GAATCTATGGGTGAAGCAAGCAGACAACAAAGGGCATGGAACAGAGAAATGACGGTTACG 349 Query 340 ACAAATCTTTCTTTAGACATAGACAAATACCCGAGAGATCTGTTACGAGGTTTCATGTCT 399 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 350 ACAAATCTTTCTCTAGACATAGATAAATACCCGAGAGATCTGTTACGAGGTTTCATGTCT 409 Query 400 GAAAACGGCGGTGGAAGAGCCTTTCACGGCGGAGAATCAGGCTGCGATGATGAGAGTGCC 459 ||||||||||||||||||| |||||||||||||||| || |||||||||||||||| | Sbjct 410 GAAAACGGCGGTGGAAGAGTCTTTCACGGCGGAGAAACAAACTGCGATGATGAGAGTACG 469 Query 460 ATTGAGCTGAATCTTGGTTTGTCTTTAGGAGGTCGATTCGGAGTAGACAAGACTCCGAGG 519 |||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 470 ATTGAGCTCAATCTTGGTTTGTCTTTAGGTGGTAGATTCGGAGTAGACAAGACTCCGAGG 529 Query 520 AAGCTGAAACGATCTTCTTCTGTTTTGGACACTGTACCATTTAACGATTCAACGGTGGCT 579 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 530 AAGCTGAAACGATCTTCTTCTGTTTTGGACACTGTACCATTCAACGATTCAACTGTGGCT 589 Query 580 GAGCCTGAGAATTACACGGTGGGTTTAGAGAGAACGACGTCGTTACCGGCGGAGATGGAA 639 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 GAGCCTGAGAATTACACGGTGGGTTTAGAGAGAACGACGTCGTTACCGGCGGAGATGGAA 649 Query 640 GAGGAATGGAGGAAAAGGAAAGAGATGCAGTCACTGAG-AGAATGGAAGCTAAGAGAAGG 698 ||||||||||||||||||||||||||||| || || || ||||||||||||||||||||| Sbjct 650 GAGGAATGGAGGAAAAGGAAAGAGATGCAATCGCTTAGGAGAATGGAAGCTAAGAGAAGG 709 Query 699 AGATGTGAGAAACAGAGTTTCAGAGTTGGGAATTCTGATGACCAAACGGTGTCCTTTGAG 758 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 710 AGATGTGAGAAACAGAGTTTCAGAGTTGGGAATTCTGATGACCAAACGGTGTCGTTTGAG 769 Query 759 AATGAGAGATGGGTTACTGCGAGTAAGAGTGGTTTCTTGCAGAGACATTTGGTTTCTTCT 818 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 770 AATGAGAGATGGGTTACTGCGAGTAAAAGTGGCTTCTTGCAGAGACATTTGGTTTCTTCT 829 Query 819 AATAGACAAGTGTGTG 834 ||||||||||| |||| Sbjct 830 AATAGACAAGTCTGTG 845 Score = 841 bits (455), Expect = 0.0 Identities = 593/654 (91%), Gaps = 31/654 (5%) Strand=Plus/Plus Query 874 AGCTGCAATGATGAAAGAAGCCCGAAGATCGTGACAGGATGTTCATCGAACAGCGGAAGC 933 |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 938 AGCTGCAATGATGAAAGAAGCCCGAAAATCGTGGCAGGATGTTCATCGAACAGCGGAAGC 997 Query 934 CAGGGAACAGAGAAACCGAGTGTGACTGGAGCCAACAAAGTGAATGAGAAT--G-A-G-- 987 ||||||||||||| ||||||||||||| ||||||||||||||||||||||| | | | Sbjct 998 CAGGGAACAGAGAGACCGAGTGTGACTAGAGCCAACAAAGTGAATGAGAATGAGAATGAA 1057 Query 988 AAAGGAGTGAGGAGAGAGGACTCGGTGGTTAGGAAAGGAAAAGGGATGGCTACGTCTACT 1047 ||| ||||||| || || |||||||||| ||||||||||||||||||||||||||||||| Sbjct 1058 AAAAGAGTGAGAAGTGAAGACTCGGTGGATAGGAAAGGAAAAGGGATGGCTACGTCTACT 1117 Query 1048 GGTTTGGTTGACATGCCTTGTGTGTTTACGAAAGGGGACGGGCCAAACGGAAGACGGGTT 1107 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1118 GGTTTGGTTGATATGCCTTGTGTGTTTACTAAAGGGGACGGGCCAAACGGAAGACGGGTT 1177 Query 1108 GACGGGATTTTGTACAAGTATGGAAAAGGAGAGGAAGTGAGGATAATGTGCATTTGCCAC 1167 || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1178 GATGGGATTCTGTACAAGTATGGAAAAGGAGAGGAAGTGAGGATAATGTGCATTTGCCAT 1237 Query 1168 GGTAGTTTCTTGACACCAGCTGAGTTTGTTAAACATGGTGGCGGAGGAGAAGTGGATCGT 1227 ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| Sbjct 1238 GGTAGTTTCTTGACACCAGCTGAGTTTGTTAAACATGGTGGTGGTGGAGATGTGGATCGT 1297 Query 1228 CCTCTACGGCATATCGTTGTCAACACTTCTTCTTCGACCTTTTAAATAGAAGAATCGGTA 1287 ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1298 CCTCTTCGGCATATCGTTGTCAACACCTCTTCTTCGACCTTTTAAATCGAAGAATCGGTG 1357 Query 1288 AAGAAACCGGA-GG-tcttttgttctttgtttcattttt---cttgttgttttatctttt 1342 ||||||||||| || |||| |||||| |||||||||||| |||||||||||||||||| Sbjct 1358 AAGAAACCGGAAGGGTCTTGTGTTCTCTGTTTCATTTTTTTTCTTGTTGTTTTATCTTTT 1417 Query 1343 ggatctcta-g-tttttgGCTATAAGAATGAATGCCAAATC-TCAA-TCTTGATGAAGAT 1398 |||||||| | ||||||||||||| ||||||||||||| | |||| ||||||||||||| Sbjct 1418 GGATCTCTCTGGTTTTTGGCTATAAAAATGAATGCCAAAACCTCAAATCTTGATGAAGAT 1477 Query 1399 TAAGATTCTCATGTT-T-T--G-T---------G--AACATGAAAGTATCATCATCAAAT 1442 |||||||||||||| | | | | | |||||||||||||||||||| ||| Sbjct 1478 CAAGATTCTCATGTTGTCTTAGGTCTAATACTTGTGAACATGAAAGTATCATCATCGAAT 1537 Query 1443 GATTCTTTCTCAAGCTCTCGCGTTTAATATAAGGCCTCTCTGCAAAGTGCGTAT 1496 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 1538 GATTCTTTCTCGAGCTCTCGCGTTTAATATAAGTCCTCTCTGCAAAGTGCGTAT 1591 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73794801150 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5