BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471537
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13780.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1932 0.0
AT5G27750.1 | Symbols: | F-box/FBD-like domains containing pro... 1000 0.0
> AT1G13780.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr1:4724608-4726499 FORWARD LENGTH=1629
Length=1629
Score = 1932 bits (1046), Expect = 0.0
Identities = 1296/1416 (92%), Gaps = 19/1416 (1%)
Strand=Plus/Plus
Query 4 ATGCCTGGGTTCGATAGAATTAGCGAATTGCCGGAATCTTTGATTAGTCATATACTCTTA 63
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 89 ATGCCTGGGTTTGATAGAATTAGCGAATTGCCGGAATCTTTGATTAGTCAAATACTGTTA 148
Query 64 CACCTTCCGACTAAAGATTCGGTGAAGACGAGTGTTTTATCGACTAGATGGAAGAATCTA 123
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 149 CACCTTCCGACTAAAGCTTCTGTGAAGACGAGTGTTTTATCGACTAGATGGAAGAATCTA 208
Query 124 TGGCTTAATGTTCCCGGACTTGACTTGAACTGCCGTGATTTCCCTTTTGATAACAACAAC 183
||||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||
Sbjct 209 TGGCTTAATGTTCCCGGACTTGATTTGAACTGCCGTGATTTCCCCTTTCAGAACAACAAC 268
Query 184 GAAAAAGTGTTGATTGATTTCATCGACAGATTTCTCCAGTTTAACAATGAGTCTCGCCTG 243
|||||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 269 GAAAAACTGTTGATTGATTTCATTGACAGATTTCTCCAGTTTAACAATGAGTCACGTCTT 328
Query 244 CTAAAATTCAAGGTAAATTACAGTAGAGATGAGATCATCAAGTTCTCGGATCGGATCCGT 303
| ||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||
Sbjct 329 CAAAAATTCAAGGTAGATTACAGTAGAGATAAGATCATTAAGTTCTCGGATCGGATTGGT 388
Query 304 GATGCGGTTAACCGCCGAATTCGAGTTTTAGATGTTGAGAGCAATACCTATTATCAAGAT 363
|| ||| ||| |||| | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 389 GACGCGATTAGCCGCGGGATTCGAGTTTTAGATGTTGAGAGCAATACCTATTATCGAGAT 448
Query 364 GCTGATGACGGCCTTGTCTATCCTTGTATCGAGTTCATGCCTCTGAATCTTTATACGAGT 423
|||||||| || ||| ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 449 GCTGATGATTGCATTGACTATCCTTGTATCGAGTTCATGCCTCTGAATCTTTATTCGTGT 508
Query 424 AAGACATTGGTTTCTTTGAAGCTTTCGTTTTCGGGTCTTGCGGATCC-GGGATTTGTTTA 482
|||||||||||||||||||||||||||| ||||||||||| |||||| ||| ||||| ||
Sbjct 509 AAGACATTGGTTTCTTTGAAGCTTTCGTATTCGGGTCTTGAGGATCCAGGG-TTTGTCTA 567
Query 483 CATGCCTTGTCTCAAATTCATGCATCTTCGAGAAGTTCGTTGGCATAGTAGTGGTACTAT 542
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 568 TTTGCCTTGTCTCAAATTCATGCATCTTCGAGAAGTTCGATGGGATAGTAGTGGTACTAT 627
Query 543 GAATCTGGACAAGCTTGTCTCAGGATGTCCTGTTCTTGAAGAACTGATTTATCTTTGTGA 602
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 628 GAATCTGGAGAAGCTTGTTTCAGGTTGTCCTGTTCTTGAAGAACTGATTTATCTTCATGA 687
Query 603 TGATGAATTGGTGGTTACTCGTGTGAGATCTCGAAGCTTGAAGAGGTTTTCTATTCCGTC 662
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 688 TGATAAATTGGTGGTTACGCGTGTGAGATCTCGAAGCTTGAAGAGGTTTTCTATTCCGTT 747
Query 663 TGAG-CACAGTA-TTTCTT-GTTTTCGGAGAGTGGCACAGACATTTGAGATTGATGCTCC 719
| || || | | |||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 748 T-AGGCATAA-ACTTTCTTTGTTTA-GGAGAGTGACACAGACATTTGAGATTGATGCTCC 804
Query 720 AGGACTAGAGTATATGAGTCTTAAAGAAGACCATTTCGATAGATTCGTGGTGAAGAACCT 779
||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct 805 TGGACTAGAGTATATGAGTCTTAAAGCAGACCATTTCGATAGAATCGTGGTAAAGAACCT 864
Query 780 GACTTCTTTATTCATGATTGACCTCGATATCAAATTCATTTTCGGGTTTGGCCGGATGTT 839
||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct 865 TACTTCTTTATTCATGATTGACCTTGATATCAAATTCATTGTCGGGTTTGGCTGGATGTT 924
Query 840 TGATCCGGAGGACTTGGCAAATAGAAATGAAATCCGTGATTTTCTCACCGGGATATCTAT 899
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 925 TGATCCGGAGGACTTACCAAAGAGAAATGAAATCCGTGATTTTCTCACCGGGATATCTAG 984
Query 900 TGTAAGACATATGATCATCTCTCATCAA-ACAGTGAAGGCCCTTCATATTTACTCAGAAG 958
||||||||||||| ||||||||||| || ||||||||||||||| || |||||||| |||
Sbjct 985 TGTAAGACATATGGTCATCTCTCAT-AATACAGTGAAGGCCCTTGATCTTTACTCAAAAG 1043
Query 959 TAGGACCGATTCCCAAATTCAATAACGTATCCCGTCTTCAGGCTGAGTTCCCGAGCTCCT 1018
|||||| ||||||||||||||||||| |||||||| | |||||| ||||||||||||||
Sbjct 1044 TAGGACTGATTCCCAAATTCAATAACTTATCCCGTGTAGAGGCTGCGTTCCCGAGCTCCT 1103
Query 1019 TGTTACAGTTTTTGCCAGCCTTTCTTGAGAGTTTCCCGAATCTGAAACACTTAATCTTGA 1078
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1104 TGTTACAGTTTTTGCCAGCCTTTCTTGAGAGCTTCCCGAATCTGAAACACTTAATCTTGG 1163
Query 1079 AAATTGTTTATCCAGAGGAGGTGATGGAGGAGTTAAAACTCGTAAATGTGCCTCGATGTT 1138
||| || | ||||| ||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 1164 AAACTGAATGTCCAGTGGAGGTGATGGAGAAGTTTGAACTCGTAAATGTGCCTCGGTGTT 1223
Query 1139 TCGTATCGACTCTTGAGCGTGTTGAGATAAAAGGATTGTTTGACTGGGGGGAAGAGGATA 1198
|||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1224 TCGTATCGACTCTTGAACATGTTGAGATAAAAGGATTGTTTGACTGGGGGGAACAGGATA 1283
Query 1199 TGAAAATAGCGAGTTACTTTCTTGAAAACTCAGCAGTCCTCGAGAAACTGATTGTGTGTT 1258
|||||||||||||||||||||| |||||||||||||||||| ||||||||||| || |||
Sbjct 1284 TGAAAATAGCGAGTTACTTTCTCGAAAACTCAGCAGTCCTCAAGAAACTGATTCTGAGTT 1343
Query 1259 TCATGGGTTGTCCTCAACATTATTCGGAATCAGATATCTACGAGGAGCTTGATAAACTCA 1318
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1344 TCATGGGTTGTCCTCAACATTATTCGGAATCAGATATCTACGAGGAACTTAATAAACTCA 1403
Query 1319 CAAAACGTTCTCTAAGATGTCAAATTATCATCGACGCTGAATTGGAATGAGGCCACGA-T 1377
|||||||||||| ||||||||||||||||| | | || | | |||||||||| || |
Sbjct 1404 CAAAACGTTCTCCGAGATGTCAAATTATCATT-A-GATGC-T-G-AATGAGGCCATGAGT 1458
Query 1378 CATTATCAGTGTAGAAAGTATGTTTTCTCATGAAAC 1413
|| || ||||||||||| ||||||||||||||||
Sbjct 1459 -ATCAT--GTGTAGAAAGTCTGTTTTCTCATGAAAC 1491
> AT5G27750.1 | Symbols: | F-box/FBD-like domains containing protein
| chr5:9828237-9830161 FORWARD LENGTH=1652
Length=1652
Score = 1000 bits (541), Expect = 0.0
Identities = 1131/1403 (81%), Gaps = 91/1403 (6%)
Strand=Plus/Plus
Query 1 GTGATGCCTGGGTTCGATAGAATTAGCGAATTGCCGGAATCTTTGATTAGTCATATACTC 60
|||||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||||
Sbjct 90 GTGATGCCTGGGTTCGATAGAATTAGCGAATTACCGGAATCTCTGATTACTCAAATACTC 149
Query 61 TTACACCTTCCGACTAAAGATTCGGTGAAGACGAGTGTTTTATCGACTAGATGGAAGAAT 120
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 150 TTATGCCTTCCGACTAAAGATTCGGTGAAGACGAGTGTTTTATCGACTAGGTGGAAGAAT 209
Query 121 CTATGGCTTAATGTTCCCGGACTTGACTTGAAC-TGCCGTGATTTCCCTTTT---GAT-A 175
|||||||| |||||||||||||||||||| ||| ||| |||||||||||||| ||| |
Sbjct 210 CTATGGCTAAATGTTCCCGGACTTGACTT-AACTTGCAGTGATTTCCCTTTTGAAGATGA 268
Query 176 ACAACAACGAAAAAGTGTTGATTGATTTCATCGACAGATTTCTCCAGTTTAA-CAATGAG 234
| || | ||| ||||||| ||| | ||||||||||| ||||| ||||||| | ||||
Sbjct 269 AGAA-TATGAACAAGTGTTCATTAACTTCATCGACAGGTTTCTAGAGTTTAATC-CTGAG 326
Query 235 TCTCGCCTGCTAAA-ATTCAAGGTAAATTACAGTA-GAGATGAGATCA-TCAAGTTCTCG 291
|| ||||||| ||| |||| ||||| |||||| | | | |||||| | | |||| |
Sbjct 327 TCACGCCTGC-AAACATTCGAGGTAGATTACAAAAGGCG-TGAGAT-ACGCGGGTTCAAG 383
Query 292 GATCGGATCCGTGA-TGCGGTTAACCGCCGAATTCGAGTTTTAGATGTTGAGAGCAATAC 350
||||||||| || | ||| |||||||| |||||||| || |||||| || ||| | |||
Sbjct 384 GATCGGATCGGT-ACAGCGATTAACCGCGGAATTCGACTTCTAGATGCTGTGAGTAGTAC 442
Query 351 CTAT-TATCAAGATGCTGATGACGGCCTTGTCTATCCTTGTATCGAGTTCATGCCTCTGA 409
| || ||| || | || || || || | ||||||| | | ||||||||||||||||
Sbjct 443 C-ATGTATTGGGA-G--GAGGAATGCATTATGTATCCTTATTTGGAGTTCATGCCTCTGA 498
Query 410 ATCT-TTATACGAGTAAGACATTGGTTTCTTTGAAGCTTTC-GTTTTCGGGTCTT-GCGG 466
|||| || ||| || ||||| |||||| |||| |||| | | | ||||| |||| | |
Sbjct 499 ATCTCTT-TACAAGCAAGACGTTGGTTACTTTAAAGC-TCCGGGATTCGGCTCTTAAC-G 555
Query 467 ATCCGGGATTTG-TTTAC-ATGCCTTGTCTCAAATTCATGCA-TCTTCGAGAAGTTCGTT 523
||||||| |||| ||| | ||||||||||| || |||||| | |||||| |||||||
Sbjct 556 ATCCGGG-TTTGCTTT-CTATGCCTTGTCTTAAGTTCATG-ATTCTTCGTGAAGTTC--- 609
Query 524 GGCATAGTAGTGGTACTATGAATCTGGACAAGCTTGTCTCAGGATGTCCTGTTCTTGAAG 583
| || || |||||| |||| ||| || ||||||||||| |||||||||||||||||||
Sbjct 610 -G-ATGGT-CTGGTACCATGAGTCTTGAGAAGCTTGTCTCTGGATGTCCTGTTCTTGAAG 666
Query 584 A----A-C----T---GA--TT--TA--TC-T-TTG-TGATGATGAATTGGTGGTTACTC 622
| | | | || || || || | ||| ||| ||||||||| ||||||||
Sbjct 667 ACCTGACCTTGGTAAGGACCTTGATATGTCATATTGATGACGATGAATTGCCGGTTACTC 726
Query 623 GTGTGAGATCTCGAAGCT-TGAAGAGGTTTTCTATTCCGTCTGAGCACA-GTA-TTTCTT 679
||||||||||||| || | |||||| ||||| | ||||| || || | | | | ||
Sbjct 727 GTGTGAGATCTCGGAG-TCTGAAGACGTTTTATGTTCCG-CT-CGCGTATGGAGTAGGTT 783
Query 680 GT-TTTCGGAGAGTGGCACAGAC--A-T--TTGAGATTGATGCTCCAGGACTAGAGTATA 733
|| || ||||| | ||||| | | |||||||||||||||||||||||||| |||
Sbjct 784 GTAGGTC-AAGAGT--CCCAGACAAAGTACTTGAGATTGATGCTCCAGGACTAGAGAATA 840
Query 734 TGAGTCTTAAAGAAGACCATTTCGATAGATTCGTGGTGAAGAACCTGACTTCTTTATTCA 793
||| ||| |||||||||||||||||| || ||||||| ||||||||||||||||| ||||
Sbjct 841 TGACTCTCAAAGAAGACCATTTCGATGGAATCGTGGTAAAGAACCTGACTTCTTTGTTCA 900
Query 794 TGATTGACCTCGATATCAAATTCATTTTCGGGTT-TGGCCGGATG-TTTGATCCGGAGGA 851
||||||| || ||||||| || | || | || || ||| | |||||||| |||||
Sbjct 901 TGATTGAACTTAATATCAAGTTTGCTGTC-GATTACCGCAGGA-GTTTTGATCCAGAGGA 958
Query 852 CTTGGCAAATAGAAATGAAATCCGTGATTTTCTCACCGGGATATCTATTGTAAGACATAT 911
||| | || ||||||||||| ||||||||||||| ||||||||| || |||||||||
Sbjct 959 CTTATCGAAGAGAAATGAAATTGGTGATTTTCTCACTGGGATATCTCGTGCAAGACATAT 1018
Query 912 GATCATCTCTCATCAAACAGTGAAGGCCCTTCATATTTACTCAGAAGTAGGACCGATTCC 971
|||||||||||| ||||||||||||| ||| | | ||||||| |||| ||| |||||||
Sbjct 1019 GATCATCTCTCAGAAAACAGTGAAGGCTCTTGAAAGTTACTCAAAAGTTGGATCGATTCC 1078
Query 972 CAAATTCAATAACGTATCCCGTCTT-CAGGCTGAGTTCCCGAGCTCCTTGTTACAGTTTT 1030
||||||||||||| | || | | || | |||| |||||||||| ||||||||| ||| |
Sbjct 1079 CAAATTCAATAACTTGTCACAT-TTAAAAGCTGTGTTCCCGAGCCCCTTGTTACCGTTCT 1137
Query 1031 TGCCAGCCTTTCTTGAGAGTTTCCCGAATCTGAAACACTTAATCTTGAAAATTG-TTTAT 1089
||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||| |
Sbjct 1138 TGCCAGCCTTTCTTGAGAGTTTCCCGAATCTGAAAAACCTAATCTTGAAGATTGCTTT-T 1196
Query 1090 CCAGAGGAGG-TGAT--GGAGGAGTTAAAACTCGTAAATGTGCCTCGATGTTTCGTATCG 1146
|| |||| | ||| ||||||| | || ||| |||| |||||||| ||| ||||||||
Sbjct 1197 GCAAAGGATGATGAGACGGAGGAGCTGAATCTCATAAACGTGCCTCGGTGTATCGTATCG 1256
Query 1147 ACTCTTGAGCGTGTTGAGATAAAAGGATTGTTTGACTGGGGGGAAGAGGATATGAAAATA 1206
||||| ||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 1257 ACTCTCGAGTGTGTTGAGATAAAAGGATTGTTTGAATGGGAGGAAGAGGAGATGAAAATA 1316
Query 1207 GCGAGTTACTTTCTTGAAAACTCAGCAGTCCTCGAGAAACTGATTGTGTGTTTCATGGGT 1266
||||| ||||||||||||||| ||||||||||| ||||||| | | || |||| || |
Sbjct 1317 GCGAGGTACTTTCTTGAAAACGCAGCAGTCCTCAAGAAACTTACTATGAGTTTTATAGAC 1376
Query 1267 TGTCCTCAACATTATTCGGAAT-CAGATATCTACGAGGAGCTTGATAAACTCACAAAACG 1325
| |||| | || ||| ||| ||||| |||||||||| ||||||||||||||||||||
Sbjct 1377 TACCCTCGATATGCTTCA-AATTCAGATGTCTACGAGGACCTTGATAAACTCACAAAACG 1435
Query 1326 TTCTCTAAGA-TGTCAAATTATC 1347
||||| || | |||| |||||||
Sbjct 1436 TTCTC-AACAATGTCGAATTATC 1457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5