BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471538 Length=2287 Score E Sequences producing significant alignments: (Bits) Value AT1G13790.1 | Symbols: | XH/XS domain-containing protein | chr... 3515 0.0 > AT1G13790.1 | Symbols: | XH/XS domain-containing protein | chr1:4727438-4730425 FORWARD LENGTH=2407 Length=2407 Score = 3515 bits (1903), Expect = 0.0 Identities = 2178/2307 (94%), Gaps = 34/2307 (1%) Strand=Plus/Plus Query 1 ATGTATTCCAGAAGAGAGCTGGAAGATTTGGAGTACCGATACTACAGTGAAATGAAAGAT 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGTATTCCAGAAGAGAGCTGGAAGATTTGGAGTACAGATACTACAGTGAAATGAAAGAT 60 Query 61 GGTACTAGGAAGGTCAAATTCTCAGAGTCTCTGTTCAGGTGTCCCTTCTGCTACAGAGAT 120 ||||| ||||| |||||| |||||||||||||||||||||||||||| || |||| |||| Sbjct 61 GGTACAAGGAAAGTCAAAATCTCAGAGTCTCTGTTCAGGTGTCCCTTTTGTTACATAGAT 120 Query 121 CGAAAGCGTGATTACCAGTTTGATGACTTG-TATCGTCATGCTTCTGGTATTGGCGGTAG 179 |||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| Sbjct 121 CGAAAGCGTGATTACCAGTTTGATGACTTGCT-TCGACATGCTTCTGGTATTGGCGGTAG 179 Query 180 CTCCCGCACTAAGGATGGGAGAGA-AAGAGCTAGACATCTTGCACTGGAGAGATATATGA 238 ||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||| Sbjct 180 TTCCCGCACTAAGGATGGGAGAGATAA-AGCTAGACATCTTGCTCTGGAGAGATATATGA 238 Query 239 GGAAGTATCTCCGCCCTCGAGAAAGACCA-GATCCTACTCCAACTTCAGATGTCTCTTCT 297 ||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| Sbjct 239 GGAAGTATCTCCGCCCTCGAGAAAGACCACG-TCCTTCTCCAACTTCAGATGTCTCTTCT 297 Query 298 CTTCCTAAAGAGGAGTTTACCAGAAAGTGGAAATCCACTTTGTCAACTACTGAAGAAGGA 357 |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 298 CTTCCTAAAGAGGAGTTTACTGGAAAGTGGAAATCTACTTTGTCAACTACTGAAGAAGGA 357 Query 358 GAATTCATAAGC-ATTGAAAAATCTACTTCACTTCATATTGTCAAAGCTGAACCAAAGTC 416 |||||||||| | | |||||| |||| ||||| |||||||||||||||||||||||||| Sbjct 358 GAATTCATAA-CTACTGAAAATTCTAGTTCACCTCATATTGTCAAAGCTGAACCAAAGTT 416 Query 417 TGTCTCAGGAGATGATCCTGGACGAAGTGGTGAGAAAAGACCAAAGTTTTCTGATAAACC 476 |||||| ||||||||| ||||||| ||||||||| |||||| |||||||||||||||||| Sbjct 417 TGTCTCCGGAGATGATTCTGGACGTAGTGGTGAGGAAAGACTAAAGTTTTCTGATAAACC 476 Query 477 CAACCCCTCTTTTAGCAACGAAGACAAATCATACCCTGTCAAAAGACCTTGCCTAGTTTC 536 | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 477 CGACCCCTTTTTTAGCAACGAAGACAAATCATACCCTGCCAAAAGACCTTGCCTAGTTTC 536 Query 537 TGGTGCTAAAGAGAGAGAAGAACCTGTCCAACAGATTGGTCTCAGCCATGGTGCTAGATT 596 |||||| |||||| |||| |||||||| |||| |||||||||||||||||||||||| || Sbjct 537 TGGTGCGAAAGAGGGAGATGAACCTGTTCAACGGATTGGTCTCAGCCATGGTGCTAGCTT 596 Query 597 TGCT-C--C---T---CAGAAGCTAGTTTCTTTGGGTGCTGGTAATGGGGATCAGATGTT 647 |||| | | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 TGCTCCAACATATCCCCAGAAGCTAGTTTCTTTGGGTGCTGGTAATGGGGATCAGATGTA 656 Query 648 TGTGCATCCCTGGAAAGGTATCCTGGCGAACATGAAAAGAAC-TTTAGATGAGGAAACAG 706 |||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||| Sbjct 657 TGTGCATCCCTGGAAAGGTATCCTGGCGAATATGAAAAGAACGTTTA-ATGAAAAAACAA 715 Query 707 GGAAGTATGCTGGTGAGAGTGGAAGCAAGATAAGAGAAGAACTGGTCAACAAAGGGTTTA 766 |||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| Sbjct 716 GGAAGTATGCTGGTGAGAGTGGAAGCAAGATAAGAGAAGATTTGATCAAGAAAGGGTTTA 775 Query 767 ATCCCCACAAAGTCACGCCATTGTGGAATGGAAAATTTGGTTTTACTGGTTTTGCTATTG 826 ||||||| |||||||||||| ||||||| |||| | |||| ||||||||||||||||||| Sbjct 776 ATCCCCATAAAGTCACGCCACTGTGGAACGGAAGACTTGGGTTTACTGGTTTTGCTATTG 835 Query 827 TTGACTTTGGTAAAGAGTGGGAAGGATTCAGAAACGCGACCATGTTTGATAAACACTTTG 886 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 TTGACTTTGGTAAAGAGTGGGAAGGATTCAGAAACGCGACCATGTTTGATAAACACTTTG 895 Query 887 AAGTGAATCAGTGTGGGAAAAGAGACCATGATTTCACACGTGATCCAGGTGATAAACTTT 946 |||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 896 AAGTGAGTCAGTGTGGGAAAAGAGACCATGATCTCACACGTGATCCAGGTGATAAGCTTT 955 Query 947 ATGGTTGGGTAGCAAAACAAGATGACTACTATTCAAGAACTGCTATTGGTGACTACCTCA 1006 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 956 ATGGTTGGGTAGCAAAACAAGATGACTACTATTCAAGAACTGCTATTGGTGACCACCTCA 1015 Query 1007 GGAAA-CAAGGGGACTTGAAGAGTGTTTCTGGTAAAGAGGCAGAAGATCAAAGAAAGACA 1065 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 -GAAAGCAAGGGGACTTGAAGAGTGTTTCTGGTAAAGAGGCAGAAGATCAAAGAAAGACA 1074 Query 1066 TTCACGCTTGTCTCAAACTTGGAAAACACACTGGAAGACAAAAAC--ACTAATCTTCAAC 1123 |||||||||||||| ||||||||||||||||||| | || ||| | | ||||||||||| Sbjct 1075 TTCACGCTTGTCTCCAACTTGGAAAACACACTGGTA-ACCAAATCTGA-TAATCTTCAAC 1132 Query 1124 AAATGGAGAGCATCTACaaaaaaaCCAGTTCAGTGCTTGAGAAAAGAATGAGAGAGAAGG 1183 |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 1133 AAATGGAGAGCATCTACAAACAAACCAGTTCAGTGCTTGAGAAAAGAATGAAAGAGAAGG 1192 Query 1184 ATGAAATGATCGACACACATAATGAAAAAATGAGTAGTATGCAGCAAACTGCGCGTGATT 1243 ||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 1193 ATGAAATGATCAACACACATAATGAAAAAATGAGTATTATGCAGCAAACTGCACGTGATT 1252 Query 1244 ATTTGGCAAGTATTTATGAAGAACATGAAAAGGCCTCTCAGCATCTGGAAGCTCAAAGGA 1303 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1253 ATTTGGCCAGTATTTATGAAGAACATGAAAAGGCCTCTCAGCATCTGGAAGCTCAAAGGA 1312 Query 1304 AAGAATATGAAGACCGGGAGAAATATCTGGATAAGTGTCAAGCTAAGAATAAGACTGAGC 1363 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1313 AAGAATATGAAGACCGGGAGAATTATCTAGATAAGTGTCAAGCTAAGAATAAGACTGAGC 1372 Query 1364 GGAGAAAGCTTCAATGGCAAAAGCAGAAGAACTTAATGGCAACTCAAGAACAAAACAAAG 1423 ||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct 1373 GGAGAAAGCTTCAATGGCAAAAGCATAAGAACTTAATGGCAACGCAAGAGCAAAACAAAG 1432 Query 1424 CTGATGAAGACATGATGAGATTGGCAGAACAGCAACAGAGGGAGAAAGATGAATTACGTA 1483 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1433 CTGATGAAGACATGATGAGATTGGCAGAACAGCAACAGAGGGAAAAAGATGAATTACGTA 1492 Query 1484 AGCAAGTCCGTGAGCTTGAGCAGAA-ACTCGATGCTGAGCAGGCATTGGAGCTAGAGATA 1542 ||||||| |||||||| ||| |||| | ||||||||||||||||||| |||||||||||| Sbjct 1493 AGCAAGTTCGTGAGCTCGAGGAGAAGA-TCGATGCTGAGCAGGCATTAGAGCTAGAGATA 1551 Query 1543 GAGCGTATGAGGGGTGACTTGCAGGTCATGGGACACATGCAAGAAGGTGAAGGTGAAGAT 1602 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1552 GAGCGTATGAGAGGTGACTTGCAGGTCATGGGACACATGCAAGAAGGTGAAGGTGAAGAT 1611 Query 1603 TCAAAAATCAAGGAGATGATAGAAAAGACAAAGGAAGAACTGAAGGAGAAAGAAGAGGAT 1662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1612 TCAAAAATCAAGGAGATGATAGAAAAGACAAAGGAAGAACTGAAGGAGAAAGAAGAGGAT 1671 Query 1663 TGGGAAT-TCCAAGAGTCGCTCTATCAAACTCTTGTTGTAAAACATGGCTACACTAACGA 1721 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1672 TGGGAATAT-CAAGAGTCGCTCTATCAAACTCTTGTTGTAAAACATGGCTACACTAACGA 1730 Query 1722 TGAGCTACAGGATGCGCGCAAGGCTTTGATTCATTCAATGCGGGAGTTGACCTCACGAGC 1781 |||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| Sbjct 1731 TGAGCTACAGGATGCGCGCAAGGCTTTGATTCGTTCAATGCGAGAGTTGACCACACGAGC 1790 Query 1782 TTACATTGGTGTGAAGAGAATGGGAGCATTGGATGAGAAACCGTTCCAAAAATTAGCTAA 1841 |||||||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||||| Sbjct 1791 TTACATTGGTGTGAAGAGAATGGGAGCATTGGATGAGACACCATTCAAAAAAGTAGCTAA 1850 Query 1842 AGAGAAATATCCAGCCGAAGAAGCTGATGAAAAAGCCGCAGAGCTCTGTTCCTTGTGGGA 1901 ||||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||||| Sbjct 1851 AGAGAAATATCCAGCAGTAGAAGCTGATAAAAAAGCCGAAGAGCTCTGTTCCTTGTGGGA 1910 Query 1902 AGAGCACTTGGGAGACTCGGCTTGGCATCCGATTAAGGTTGTCGTAAAAGATGGAACCCC 1961 ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| | | Sbjct 1911 AGAGCACCTGGGAGACTCGGCTTGGCATCCGATTAAGGTCGTCGAAAAAGATGGAATCGC 1970 Query 1962 AAAGGAAGAACTGAATGAAGAAGATGAGAAGCTACAAGAGCTGAGGAAAGAGTTGGGTGA 2021 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1971 AAAGGAAGAACTGAATGAAGAAGATGAGAAGCTACAAGAGCTGAGGAAAGAGTTGGGTGA 2030 Query 2022 GGAAGTGTATGCAGCTGTGACACAAGCGCTTAAAGAAAGGAACGAGTATAATGGCAGTGG 2081 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2031 GGAAGTGTATGCAGCTGTGACACAAGCGCTTAAAGAAAGGAACGAGTATAATGGCAGTGG 2090 Query 2082 AAGGTACATAGTGCCTGAGCTTTGGAATTTCAGAGAAAACAGAAAAGCGA-CTATCAAGG 2140 |||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||||| Sbjct 2091 AAGGTACATAGTGCCTGAGCTTTGGAATTTCAAACAAAACAGAAAAGCGAGC-ATCAAGG 2149 Query 2141 AAGGAGTTGTTTATCTGCTCAACTCGTGGAAACAGAAGAAACCAAAGCCGAAGCGTAGAT 2200 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2150 AAGGAGTTGTTTATCTGGTCAACTCGTGGAAACAGAAGAAACCAAAGCCGAAGCGTAGAT 2209 Query 2201 AAATAAATTTTATTCTAGAAACCTCTATTGTTGATAATTATTAAGAGTAGATGAGATTTT 2260 ||| || || ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2210 AAA-AA-TTA-ATTCTAGAAACCTCTATTGTTGATAATTATTAAGACTAGATGAGATTTC 2266 Query 2261 ATGATTATCCCCACTAAGAATAGTTAT 2287 ||||||||||||||||||||||||||| Sbjct 2267 ATGATTATCCCCACTAAGAATAGTTAT 2293 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 113503432245 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5