BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471538
Length=2287
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13790.1 | Symbols: | XH/XS domain-containing protein | chr... 3515 0.0
> AT1G13790.1 | Symbols: | XH/XS domain-containing protein | chr1:4727438-4730425
FORWARD LENGTH=2407
Length=2407
Score = 3515 bits (1903), Expect = 0.0
Identities = 2178/2307 (94%), Gaps = 34/2307 (1%)
Strand=Plus/Plus
Query 1 ATGTATTCCAGAAGAGAGCTGGAAGATTTGGAGTACCGATACTACAGTGAAATGAAAGAT 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGTATTCCAGAAGAGAGCTGGAAGATTTGGAGTACAGATACTACAGTGAAATGAAAGAT 60
Query 61 GGTACTAGGAAGGTCAAATTCTCAGAGTCTCTGTTCAGGTGTCCCTTCTGCTACAGAGAT 120
||||| ||||| |||||| |||||||||||||||||||||||||||| || |||| ||||
Sbjct 61 GGTACAAGGAAAGTCAAAATCTCAGAGTCTCTGTTCAGGTGTCCCTTTTGTTACATAGAT 120
Query 121 CGAAAGCGTGATTACCAGTTTGATGACTTG-TATCGTCATGCTTCTGGTATTGGCGGTAG 179
|||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct 121 CGAAAGCGTGATTACCAGTTTGATGACTTGCT-TCGACATGCTTCTGGTATTGGCGGTAG 179
Query 180 CTCCCGCACTAAGGATGGGAGAGA-AAGAGCTAGACATCTTGCACTGGAGAGATATATGA 238
||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 180 TTCCCGCACTAAGGATGGGAGAGATAA-AGCTAGACATCTTGCTCTGGAGAGATATATGA 238
Query 239 GGAAGTATCTCCGCCCTCGAGAAAGACCA-GATCCTACTCCAACTTCAGATGTCTCTTCT 297
||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||
Sbjct 239 GGAAGTATCTCCGCCCTCGAGAAAGACCACG-TCCTTCTCCAACTTCAGATGTCTCTTCT 297
Query 298 CTTCCTAAAGAGGAGTTTACCAGAAAGTGGAAATCCACTTTGTCAACTACTGAAGAAGGA 357
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 298 CTTCCTAAAGAGGAGTTTACTGGAAAGTGGAAATCTACTTTGTCAACTACTGAAGAAGGA 357
Query 358 GAATTCATAAGC-ATTGAAAAATCTACTTCACTTCATATTGTCAAAGCTGAACCAAAGTC 416
|||||||||| | | |||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 358 GAATTCATAA-CTACTGAAAATTCTAGTTCACCTCATATTGTCAAAGCTGAACCAAAGTT 416
Query 417 TGTCTCAGGAGATGATCCTGGACGAAGTGGTGAGAAAAGACCAAAGTTTTCTGATAAACC 476
|||||| ||||||||| ||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct 417 TGTCTCCGGAGATGATTCTGGACGTAGTGGTGAGGAAAGACTAAAGTTTTCTGATAAACC 476
Query 477 CAACCCCTCTTTTAGCAACGAAGACAAATCATACCCTGTCAAAAGACCTTGCCTAGTTTC 536
| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 477 CGACCCCTTTTTTAGCAACGAAGACAAATCATACCCTGCCAAAAGACCTTGCCTAGTTTC 536
Query 537 TGGTGCTAAAGAGAGAGAAGAACCTGTCCAACAGATTGGTCTCAGCCATGGTGCTAGATT 596
|||||| |||||| |||| |||||||| |||| |||||||||||||||||||||||| ||
Sbjct 537 TGGTGCGAAAGAGGGAGATGAACCTGTTCAACGGATTGGTCTCAGCCATGGTGCTAGCTT 596
Query 597 TGCT-C--C---T---CAGAAGCTAGTTTCTTTGGGTGCTGGTAATGGGGATCAGATGTT 647
|||| | | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGCTCCAACATATCCCCAGAAGCTAGTTTCTTTGGGTGCTGGTAATGGGGATCAGATGTA 656
Query 648 TGTGCATCCCTGGAAAGGTATCCTGGCGAACATGAAAAGAAC-TTTAGATGAGGAAACAG 706
|||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||
Sbjct 657 TGTGCATCCCTGGAAAGGTATCCTGGCGAATATGAAAAGAACGTTTA-ATGAAAAAACAA 715
Query 707 GGAAGTATGCTGGTGAGAGTGGAAGCAAGATAAGAGAAGAACTGGTCAACAAAGGGTTTA 766
|||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 716 GGAAGTATGCTGGTGAGAGTGGAAGCAAGATAAGAGAAGATTTGATCAAGAAAGGGTTTA 775
Query 767 ATCCCCACAAAGTCACGCCATTGTGGAATGGAAAATTTGGTTTTACTGGTTTTGCTATTG 826
||||||| |||||||||||| ||||||| |||| | |||| |||||||||||||||||||
Sbjct 776 ATCCCCATAAAGTCACGCCACTGTGGAACGGAAGACTTGGGTTTACTGGTTTTGCTATTG 835
Query 827 TTGACTTTGGTAAAGAGTGGGAAGGATTCAGAAACGCGACCATGTTTGATAAACACTTTG 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TTGACTTTGGTAAAGAGTGGGAAGGATTCAGAAACGCGACCATGTTTGATAAACACTTTG 895
Query 887 AAGTGAATCAGTGTGGGAAAAGAGACCATGATTTCACACGTGATCCAGGTGATAAACTTT 946
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 896 AAGTGAGTCAGTGTGGGAAAAGAGACCATGATCTCACACGTGATCCAGGTGATAAGCTTT 955
Query 947 ATGGTTGGGTAGCAAAACAAGATGACTACTATTCAAGAACTGCTATTGGTGACTACCTCA 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 956 ATGGTTGGGTAGCAAAACAAGATGACTACTATTCAAGAACTGCTATTGGTGACCACCTCA 1015
Query 1007 GGAAA-CAAGGGGACTTGAAGAGTGTTTCTGGTAAAGAGGCAGAAGATCAAAGAAAGACA 1065
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 -GAAAGCAAGGGGACTTGAAGAGTGTTTCTGGTAAAGAGGCAGAAGATCAAAGAAAGACA 1074
Query 1066 TTCACGCTTGTCTCAAACTTGGAAAACACACTGGAAGACAAAAAC--ACTAATCTTCAAC 1123
|||||||||||||| ||||||||||||||||||| | || ||| | | |||||||||||
Sbjct 1075 TTCACGCTTGTCTCCAACTTGGAAAACACACTGGTA-ACCAAATCTGA-TAATCTTCAAC 1132
Query 1124 AAATGGAGAGCATCTACaaaaaaaCCAGTTCAGTGCTTGAGAAAAGAATGAGAGAGAAGG 1183
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1133 AAATGGAGAGCATCTACAAACAAACCAGTTCAGTGCTTGAGAAAAGAATGAAAGAGAAGG 1192
Query 1184 ATGAAATGATCGACACACATAATGAAAAAATGAGTAGTATGCAGCAAACTGCGCGTGATT 1243
||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1193 ATGAAATGATCAACACACATAATGAAAAAATGAGTATTATGCAGCAAACTGCACGTGATT 1252
Query 1244 ATTTGGCAAGTATTTATGAAGAACATGAAAAGGCCTCTCAGCATCTGGAAGCTCAAAGGA 1303
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 ATTTGGCCAGTATTTATGAAGAACATGAAAAGGCCTCTCAGCATCTGGAAGCTCAAAGGA 1312
Query 1304 AAGAATATGAAGACCGGGAGAAATATCTGGATAAGTGTCAAGCTAAGAATAAGACTGAGC 1363
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1313 AAGAATATGAAGACCGGGAGAATTATCTAGATAAGTGTCAAGCTAAGAATAAGACTGAGC 1372
Query 1364 GGAGAAAGCTTCAATGGCAAAAGCAGAAGAACTTAATGGCAACTCAAGAACAAAACAAAG 1423
||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1373 GGAGAAAGCTTCAATGGCAAAAGCATAAGAACTTAATGGCAACGCAAGAGCAAAACAAAG 1432
Query 1424 CTGATGAAGACATGATGAGATTGGCAGAACAGCAACAGAGGGAGAAAGATGAATTACGTA 1483
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1433 CTGATGAAGACATGATGAGATTGGCAGAACAGCAACAGAGGGAAAAAGATGAATTACGTA 1492
Query 1484 AGCAAGTCCGTGAGCTTGAGCAGAA-ACTCGATGCTGAGCAGGCATTGGAGCTAGAGATA 1542
||||||| |||||||| ||| |||| | ||||||||||||||||||| ||||||||||||
Sbjct 1493 AGCAAGTTCGTGAGCTCGAGGAGAAGA-TCGATGCTGAGCAGGCATTAGAGCTAGAGATA 1551
Query 1543 GAGCGTATGAGGGGTGACTTGCAGGTCATGGGACACATGCAAGAAGGTGAAGGTGAAGAT 1602
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 GAGCGTATGAGAGGTGACTTGCAGGTCATGGGACACATGCAAGAAGGTGAAGGTGAAGAT 1611
Query 1603 TCAAAAATCAAGGAGATGATAGAAAAGACAAAGGAAGAACTGAAGGAGAAAGAAGAGGAT 1662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TCAAAAATCAAGGAGATGATAGAAAAGACAAAGGAAGAACTGAAGGAGAAAGAAGAGGAT 1671
Query 1663 TGGGAAT-TCCAAGAGTCGCTCTATCAAACTCTTGTTGTAAAACATGGCTACACTAACGA 1721
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 TGGGAATAT-CAAGAGTCGCTCTATCAAACTCTTGTTGTAAAACATGGCTACACTAACGA 1730
Query 1722 TGAGCTACAGGATGCGCGCAAGGCTTTGATTCATTCAATGCGGGAGTTGACCTCACGAGC 1781
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||
Sbjct 1731 TGAGCTACAGGATGCGCGCAAGGCTTTGATTCGTTCAATGCGAGAGTTGACCACACGAGC 1790
Query 1782 TTACATTGGTGTGAAGAGAATGGGAGCATTGGATGAGAAACCGTTCCAAAAATTAGCTAA 1841
|||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||||
Sbjct 1791 TTACATTGGTGTGAAGAGAATGGGAGCATTGGATGAGACACCATTCAAAAAAGTAGCTAA 1850
Query 1842 AGAGAAATATCCAGCCGAAGAAGCTGATGAAAAAGCCGCAGAGCTCTGTTCCTTGTGGGA 1901
||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1851 AGAGAAATATCCAGCAGTAGAAGCTGATAAAAAAGCCGAAGAGCTCTGTTCCTTGTGGGA 1910
Query 1902 AGAGCACTTGGGAGACTCGGCTTGGCATCCGATTAAGGTTGTCGTAAAAGATGGAACCCC 1961
||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| | |
Sbjct 1911 AGAGCACCTGGGAGACTCGGCTTGGCATCCGATTAAGGTCGTCGAAAAAGATGGAATCGC 1970
Query 1962 AAAGGAAGAACTGAATGAAGAAGATGAGAAGCTACAAGAGCTGAGGAAAGAGTTGGGTGA 2021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 AAAGGAAGAACTGAATGAAGAAGATGAGAAGCTACAAGAGCTGAGGAAAGAGTTGGGTGA 2030
Query 2022 GGAAGTGTATGCAGCTGTGACACAAGCGCTTAAAGAAAGGAACGAGTATAATGGCAGTGG 2081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 GGAAGTGTATGCAGCTGTGACACAAGCGCTTAAAGAAAGGAACGAGTATAATGGCAGTGG 2090
Query 2082 AAGGTACATAGTGCCTGAGCTTTGGAATTTCAGAGAAAACAGAAAAGCGA-CTATCAAGG 2140
|||||||||||||||||||||||||||||||| | ||||||||||||||| | |||||||
Sbjct 2091 AAGGTACATAGTGCCTGAGCTTTGGAATTTCAAACAAAACAGAAAAGCGAGC-ATCAAGG 2149
Query 2141 AAGGAGTTGTTTATCTGCTCAACTCGTGGAAACAGAAGAAACCAAAGCCGAAGCGTAGAT 2200
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 AAGGAGTTGTTTATCTGGTCAACTCGTGGAAACAGAAGAAACCAAAGCCGAAGCGTAGAT 2209
Query 2201 AAATAAATTTTATTCTAGAAACCTCTATTGTTGATAATTATTAAGAGTAGATGAGATTTT 2260
||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2210 AAA-AA-TTA-ATTCTAGAAACCTCTATTGTTGATAATTATTAAGACTAGATGAGATTTC 2266
Query 2261 ATGATTATCCCCACTAAGAATAGTTAT 2287
|||||||||||||||||||||||||||
Sbjct 2267 ATGATTATCCCCACTAAGAATAGTTAT 2293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113503432245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5