BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471542
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13830.1 | Symbols: | Carbohydrate-binding X8 domain superf... 1190 0.0
> AT1G13830.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:4739873-4741038 REVERSE LENGTH=832
Length=832
Score = 1190 bits (644), Expect = 0.0
Identities = 760/814 (93%), Gaps = 15/814 (2%)
Strand=Plus/Plus
Query 1 TAACTTCTCTCTCTAAAGCCATCATCTT-A--A-TTTTGGTTAGTACCT---GGTTCTTG 53
||||||||||||| |||||||||||||| | | ||||||||||||||| ||||||||
Sbjct 7 TAACTTCTCTCTCCAAAGCCATCATCTTAATTAGTTTTGGTTAGTACCTGCAGGTTCTTG 66
Query 54 GTTTTGAAAGTCAAAGTCTCTTTTGTGCTTCTCCTAAAGAGCGATCATGAAAGTGCTTCT 113
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 67 GTTTTTAAAGTCAAAGTCTCTTTTGTGCTTCTCGTAAAGAGCGATCATGAAAGTGCTTCT 126
Query 114 GGGTCTTTTGCTTCTCTTGGCCTTGACCAAATCTTCAAGTGCAATTTACTGTCTCTGCAA 173
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||
Sbjct 127 CGGTCTTTTGCTTCTCTTGTCCTTGACCAATTCTTCAAGTGCAATTTACTGTCTCTGTAA 186
Query 174 AGATGGGATAGGAGACACAGAGCTTCAAACATCAATAGACTATGCATGTGGAACTTTAGC 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 187 AGATGGGATAGGAGACACAGAGCTTCAAACATCAATAGACTATGCATGTGGAACCTTAGC 246
Query 234 AGATTGTAATCCTATACATGATAACGGTTCTTGTTTTCAACCAAACACCATCAAAAGCCA 293
||||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||
Sbjct 247 TGATTGTAATCCTATACATGATAAGGGTACTTGTTATCAACCAGACACCATCAAAAGCCA 306
Query 294 CTGTGATTGGGCTGTTAACAGCTACTTCCAAAACGCAGCTCAAGTCCCTGGAAGCTGCAA 353
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CTGTGATTGGGCTGTGAATAGCTACTTCCAAAACGCAGCTCAAGTCCCTGGAAGCTGCAA 366
Query 354 TTTCTCCGGCACTGCCACTACCAATCCAAACCCACCTTCCAATTTGGCTAATGGTTGCAT 413
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TTTCTCTGGCACTGCCACTACCAATCCAAACCCACCTTCCAATTTGGCTAATGGTTGCAT 426
Query 414 CTATCCTTCAAGCGCTAGCTCTACAAGGTCGCCTCCATCAACAACACCACCAACGGGAAG 473
|||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 427 CTATCCGTCAAGCCCTAGCTCTACTAGGTCTCCTCCATCAACAACACCACCAACGGGAAC 486
Query 474 TGGAACACCTCCCACAAACGGAACCACTCCATTTCCGGGAACTCCATTTCCAGGAACTCC 533
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 487 ---AAC---TCCCACAAACGGAACCACTCCATTTCCGGGAACTCCATTTCCAGGAACACC 540
Query 534 GTTTCCAGGAACTCCTCCGGTTTTTGGTCCAACCGGAGTCTTTAACCCAAGCAACCCAGG 593
||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 541 GTTCCCGGGAACTCCTCCGGTGTTTGGTCCAACCGGAGTCTTCAACCCAAGCAACCCAGG 600
Query 594 CAGTGGTGCCTCAAGTTTGGTTATCTCCTCTGTTTACACACTCTGTTTTTCATTACTAGT 653
||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 601 CAGTGGTGCTTCAAGTTTGGGCACCTCCTCTGTTTTCACACTCTGTTTTTCATTACTAGC 660
Query 654 GTTTCTTTGTGGTTCTGATGTAAGGTTTGGATTTAGCCACGTGTAGAGAC-AGAAAGACA 712
||||| || || |||||||||||||| |||||||||||||||||||||| | |||||||
Sbjct 661 CTTTCTATGGGGCTCTGATGTAAGGTTCGGATTTAGCCACGTGTAGAGACTA-AAAGACA 719
Query 713 TCCACTTGTGTTAGTCTTTGATTCTGTTTTGGGTGGAACAAGAAGTTTAGGCGTTTGTTG 772
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 720 TCCACTTGTGTTAGTCTTTGATTCTATTTTGGGTGGAACAAGAAGCTTAGGCGTTTGTTG 779
Query 773 AGCTTTCGTCTATGTAAAGGTTGCTCTAATAGAA 806
||||||||||||||||||||||||||||||||||
Sbjct 780 AGCTTTCGTCTATGTAAAGGTTGCTCTAATAGAA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39333337101
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5