BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471548
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13880.1 | Symbols: | ELM2 domain-containing protein | chr1... 2409 0.0
> AT1G13880.1 | Symbols: | ELM2 domain-containing protein | chr1:4748873-4751212
FORWARD LENGTH=1705
Length=1705
Score = 2409 bits (1304), Expect = 0.0
Identities = 1526/1631 (94%), Gaps = 24/1631 (1%)
Strand=Plus/Plus
Query 1 ATCCGAATTTAATCCGGGTTTCAAAATCGGGTCTTTCCCCTAATCGAAAAGCACGAATTT 60
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCCGAGTTAAATCCGGGTTTCAAAATCGGGTCTTTCCCCTAATCGAAAAGCACGAATTT 60
Query 61 TCAACCCTAGCCGCTTTCCAAAATTCCCCCAATTTTAtttttttCCCCTACCAAATTTTC 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAACCCTAGCCGCTTTCGAAAATTCCCCCAATTTTATTTTTTTCCCCTACCAAATTTTC 120
Query 121 TTCGAATTTGAGCTCAGATCCCTTCCTTCTTCCAAATCGATCTTCAGATCTAtttttttt 180
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 121 TTCGAATTTCAGCTCAGATCCCTTCCTTCTTCCAGATCGATCTTCAGATCTATTGTTTTT 180
Query 181 tATCCGAATGGGTTTTAAGCGTACTTTTGATGCTGAGGATGTGCAAGAGCTCAACGTTAA 240
|| |||||||||| ||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct 181 TA--AGAATGGGTTTCAAGCGAACGTTTGACGCTGAAGATGTTCAAGAGCTCAACGTTAA 238
Query 241 GCATGCAAGACAGATTAGTTATTGTAATAAGCTGGCCAAACTAGATGAAGGAGTTCCATA 300
| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAATGGAAGACAGATTAGTTACTGTAATAAGCTGGCCAAACTAGATGAAGGAGTTCCATA 298
Query 301 TCGTGTTTCACTGGAGAAGTCAAGTGTCGTAGGAGATGATATAAGTGATCTCTATGGGTA 360
|||| |||||||||||||| || ||||||||||| ||||||||||||||||||| |||||
Sbjct 299 TCGTCTTTCACTGGAGAAGCCAGGTGTCGTAGGATATGATATAAGTGATCTCTACGGGTA 358
Query 361 TAAATGTGAGGATAACCTTGAGAAGGGGTTTGAGACCAACGCGTCTTTCTCTTGGATCAC 420
|||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct 359 TAAATGTGAGGATAACGTTGACAAGGGGTTTGAGACCAATGCGCCTTTCTCTTGGATCAC 418
Query 421 AACTGGTTTGTGTGAGGAGGATTCTCAGTCTGGAGCTACGACTCAGTCTACCCTTTCTCA 480
||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 419 AACTGGTTTGTCTGAGGAGGATTCTCAGTCTGGAGCTACGATTCAGTCTACCATTTCTCA 478
Query 481 TGAATCGCCTGAGTCGGATATACCTTGGAGACCGGTTTGCTC---GGAAGAAGATGTTTA 537
|||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 479 TGAATCTCCTGAGTCAGATATACCTTGGAGACCGGTTTGCTCTGGGGAAGAAGATGGCTA 538
Query 538 TTGGTGTCCGGTTTCTCCTAGAAAAACAGTTCCAATAGGGCCGGATTACCAGGCTGATAT 597
|||||||||| |||||||||||||||| |||||||| ||| | |||||||||||||||||
Sbjct 539 TTGGTGTCCGATTTCTCCTAGAAAAACGGTTCCAATCGGGTCAGATTACCAGGCTGATAT 598
Query 598 CCCTGAATGTGTCAAGGAAGAGGCAAGTGATCAGTCGGGTCAGGCAGCTGTTGATTACGA 657
||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||
Sbjct 599 TCCTGAATGTGTCAAGGAAGAGGCAAATGATCAGTCGGGTCA---AGGTGTTGGTTACGA 655
Query 658 TGAAGAACAAGTGACGGGGAAGTGCGTGATTCCAATGCCTGACTGTGAAACCGAGGTCTG 717
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 656 TGAAGAACAAGTGACAGGGAAGTGCGTAATTCCAATGCCTGACTGTGAAACCGAGGTCTG 715
Query 718 CAAAATTGGTAAAGGAAGAAAGGAATGCATTTGCCTGGATAAAGGTTCCATCAGATGTGT 777
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CAAGATTGGTAAAGGAAGAAAGGAATGCATTTGCCTGGATAAAGGTTCCATCAGATGTGT 775
Query 778 GCAGCAGCATATAATGGAAAACAGGGAAGACTTGTTTGAAACTATTGGGTACGACAGATG 837
||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 776 ACAGCAGCATATTATGGAAAACAGGGAAGATTTGTTTGCAACTATTGGGTACGACAGGTG 835
Query 838 TCTGAATTTAGGTCTTTATGAAATGGGTGAGGAAGTTGCGGGTAAG-CTAACTGAAGACG 896
|||| || ||||||||| ||||||||| ||||||||||| | | || |||||||||||||
Sbjct 836 TCTGGATATAGGTCTTTGTGAAATGGGGGAGGAAGTTGCTGCT-AGACTAACTGAAGACG 894
Query 897 AGGAAGATCTATTTCACGAGATTGTGTACTCCAACCCGGTTTCAATGGACAGGGATTTCT 956
|||||||||| ||||| |||||||| |||||||| ||||||||||||||| |||||||||
Sbjct 895 AGGAAGATCTGTTTCATGAGATTGTTTACTCCAATCCGGTTTCAATGGACCGGGATTTCT 954
Query 957 GGAAATACCTAAAGTCTGCGTTTCCTTCACGAACTATGAAGGAAATTGTGAGCTATTATT 1016
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 955 GGAAACACCTAAAGTCTGCGTTTCCTTCACGAACCATGAAGGAAATTGTGAGCTATTATT 1014
Query 1017 TCAATGTCTTTATCCTGCGAAGACGAGCTATCCAGAATCGTTCTAAAAGCCTGGATGTTG 1076
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1015 TCAATGTCTTTATCCTGCGAAGACGAGCTATCCAGAACCGTTCTAAAAGCCTGGATGTTG 1074
Query 1077 ATAGTGATGATGACGAGTGGCAAGTAGAGTATGACAACACCTTTTATGGTGCTGAAACTC 1136
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 ATAGTGATGATGATGAGTGGCAAGTAGAGTATGACAACACCTTTTATGGTGCTGAAACTC 1134
Query 1137 CATCTGATGAAAAAGCCGAAAAAAGCCTCTCAAGAGACGAAGAAGAAGAGGGTAATGCTA 1196
|||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1135 CATCAGATGACAAAGCCGAAAAAAGCCTCTCAAGAGACGAAGGAGAAGAGGTTAATGCTA 1194
Query 1197 ATGAAGATTCGTACATGTCCTTTGAGTATCAGTCCAACGCAGTCTACTCTCGATGTCCAG 1256
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1195 ATGAAGATTCGTACATGTCCTTTGAGAATCAGTCCAACGCAATCTACTCTCGATGTCCAG 1254
Query 1257 TTAGAAACAGAGAAGAATCCAACATTGGGAATTACTGGCGCCACTGCAATGATCTTGTGG 1316
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TTAGAAATAGAGAAGAATCCAACATTGGGAATTACTGGCGCCACTGCAATGATCTTGTGG 1314
Query 1317 ATCAGTCGTATTCATTTGATCCTTGTGATTCAATACTGCCAGATCATTGTTGGACTAAGA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 ATCAGTCGTATTCATTTGATCCTTGTGATTCAATACTGCCAGATCATTGTTGGACTAAGA 1374
Query 1377 ACATTGATCTTCTTCCAACTTCAAACATCATTGACGAGATCTTTGGTCAAGACC-C--AT 1433
|||||||||| ||||||||||||||||| || ||||| |||||||||||||||| | ||
Sbjct 1375 ACATTGATCTGCTTCCAACTTCAAACATTATCGACGAAATCTTTGGTCAAGACCACCCAT 1434
Query 1434 GGGATGATTTCTCCAGAGGGAAGTAAATGAAGAATAATTGTCTCCCATCTCCATTGTTAC 1493
||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||
Sbjct 1435 GGGATGATTTCTCCAGAGGGAAGTAAATGAAGAAT--T-GTCTCCCATGTCCATTGCTAC 1491
Query 1494 TCTACTCCAAGTTCTGAATCTT--GT--GTAAATGCATTATTTAAGAAAATCTCAAGTTG 1549
||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1492 TCTGCTCCAAGTTCTGAATCTTCTGTATGTAAATGCATTATTTAAGAAAATCTCAAGTTG 1551
Query 1550 GAAGTTTTGAGGGAGTCCTGTCCGTGTATAGTTT-ATGGCAGTGGAAACTT-TGTGTTTT 1607
||||||||||||||| | |||| ||||||||||| ||||| |||||||||| ||||||||
Sbjct 1552 GAAGTTTTGAGGGAGGCATGTC-GTGTATAGTTTTATGGCCGTGGAAACTTATGTGTTTT 1610
Query 1608 TGATA-TTTAG 1617
||||| |||||
Sbjct 1611 TGATACTTTAG 1621
Score = 100 bits (54), Expect = 4e-20
Identities = 61/64 (95%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 1613 TTTAGATTTTGTTGTAAGAAGA-AGAAAAAAT-CTTCAACTGTTTAATAAACTAACTTTT 1670
|||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||
Sbjct 1641 TTTAGATTTTGTTGTAAGAAGATAAAAAAAATTCTTCAACTGTTTAATAAACTAACTTTT 1700
Query 1671 GTTC 1674
||||
Sbjct 1701 GTTC 1704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82730498160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5