BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471551
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13910.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1923 0.0
> AT1G13910.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:4755784-4757991 FORWARD LENGTH=1341
Length=1341
Score = 1923 bits (1041), Expect = 0.0
Identities = 1240/1335 (93%), Gaps = 18/1335 (1%)
Strand=Plus/Plus
Query 1 GTTTTTGGTTAGTTTAGTTTCCACTGAGCTTGCTTTCTTCCATGGCGATGATAAATAATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GTTTTTGGTTAGTTTAGTTTCCACTGAGCTTGCTTTCTTCCATGGCGATGATAAATAATT 62
Query 61 CTTCTTCTTTCTCCCACACCATTTCACTTTCCGATTTTATAAAATTGATTCTTCTCTTCT 120
||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CTTCTTCTTCCTCACACACAATTTCACTTTCCGATTTTATAAAATTGATTCTTCTCTTCT 122
Query 121 TCTTAAACCCACGAAGAATTCATGATTTCGTAAGCTCTATAGATCATCTGAAGCATAATC 180
||||||||||| ||||| ||||||| || | || || || | || | |||||||||
Sbjct 123 TCTTAAACCCATGAAGAGTTCATGA-TT--T---CT-TA-AG--C-TC-GCAGCATAATC 170
Query 181 AATGGCGAATCTGAGTTTGAGCTTGTCTCTGATCTTCCGGATTTGCGCT-TTTCTATTGC 239
||||||||| ||||||||||||||| ||| ||| ||||||||| |||| ||| | ||||
Sbjct 171 GATGGCGAATTTGAGTTTGAGCTTGTATCTAATCCTCCGGATTTACGCTCTTT-TGTTGC 229
Query 240 TGATCAATGTCTCCTTCGCCAAAACACTTAAACGAGACATGAAAGCTTTGAATGAAG-TA 298
|| |||||||||||||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 230 TGTTCAATGTCTCCTTCGCTAAAACACTTAAACGAGACATGAAAGCTTTGAATG-AGATA 288
Query 299 AAGAGATTGGTGGGATGGAGATTGGTGTACTCTTGGGTCGGTGATGATCCTTGTGGCGAT 358
|||| ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 289 AAGAAATTGGTGGGATGGAGATTGGTATACTCTTGGGTTGGAGATGATCCTTGTGGCGAT 348
Query 359 GGAGTTTTGCCTCCGTGGTCTGGAGTTACTTGCTC-AACAGTTGGCGATTACCGTGTCGT 417
||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 349 GGAGTTTTGCCTCCGTGGTCTGGAGTTACTTGCTCTAA-AGTTGGCGATTATCGTGTCGT 407
Query 418 CATCAAGCTAGAAGTGTATTCAATGTCGATAGTGGGGAATTTCCCAAAGGCTGTAACGAA 477
| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 408 CGTCAAGCTAGAAGTGTATTCAATGTCGATAGTTGGGAATTTCCCAAAGGCTATAACGAA 467
Query 478 GCTCTTAGATCTCACTGTTTTGGATCTTCACAACAACAAATTAACAGGCCCTATTCCTTC 537
||||||||||||||||||||||||| | || || |||||||||||||| ||||||||| |
Sbjct 468 GCTCTTAGATCTCACTGTTTTGGATATGCATAATAACAAATTAACAGGTCCTATTCCTCC 527
Query 538 AGAAATTGGGAGGCTTAAGCGTCTTAAGACACTAAATTTGAGGTGGAATAAACTTCAATA 597
|||||||||| |||||||||| |||| ||||| |||||||||||||| ||||||||| |
Sbjct 528 AGAAATTGGGCGGCTTAAGCGGCTTATCACACTGAATTTGAGGTGGAACAAACTTCAACA 587
Query 598 TGTACTACCTCCTGAAATTGGTGGATTGAAGAGTCTAACTAATCTGTACCTAAGCTTTAA 657
| ||| ||||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 588 GGCACTGCCTCCTGAAATTGGTGGATTGAAGAGTCTAACTTATCTGTACCTGAGTTTTAA 647
Query 658 CAATTTCAGAGGAGAAATCCCCAAAGAACTTGCAAATCTTCATGAGCTCCAATACTTACA 717
|||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 648 CAATTTCAAAGGAGAAATCCCCAAAGAACTTGCAAATCTCCATGAGCTCCAGTACTTACA 707
Query 718 TATTCAGGAGAATCATTTTACTGGGCGGATTCCGGCAGAGCTGGGAACATTACAAAAACT 777
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 708 TATTCAGGAGAATCATTTTACTGGGCGAATTCCAGCAGAGCTGGGAACATTACAAAAACT 767
Query 778 TCGCCGCTTGGATGCTGGCAACAATAACTTAGTGGGAAGTATAAGTGATCTTTTTCGCAT 837
||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 768 TCGCCACTTGGATGCTGGCAACAATAACTTAGTGGGGAGTATAAGCGATCTTTTTCGCAT 827
Query 838 AGAAGGATGCTTTCCAGCTCTTAGAAACCTGTTTTTAAACAATAATTACTTCACTGGAGG 897
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 828 TGAAGGATGCTTTCCAGCTCTTAGAAACCTGTTTTTAAACAATAATTACTTGACTGGAGG 887
Query 898 ACTCCCAAACAAGCTTGCAAATCTAACAAACCTAGAGATCTTGTACTTATCTTACAACAA 957
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 888 ACTCCCAAACAAGCTTGCAAATCTAACAAACCTGGAGATCTTGTACTTATCTTTCAACAA 947
Query 958 ATTGACTGGAGCAATACCCGCTGCACTTGCCAATATACCAAGACTAACTAACTTGCACTT 1017
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 948 AATGACTGGAGCAATACCCGCTGCACTTGCCAGTATACCAAGACTAACTAACTTGCACTT 1007
Query 1018 GGACCATAATCTATTCAATGGAAGTATCCCTGAAGCTTTCTACAAGCATCCCAACTTAAA 1077
|||||| |||||||||||||||||||| |||||||| |||||||||||||| ||| ||||
Sbjct 1008 GGACCACAATCTATTCAATGGAAGTATACCTGAAGCCTTCTACAAGCATCCAAACCTAAA 1067
Query 1078 AGATATGTACATAGAAGGGAATGCCTTCAAACCAGACGTGAAGGCGATTGGTGCACATCG 1137
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1068 AGATATGTACATAGAAGGGAATGCTTTCAAATCAGACGTGAAGGCGATTGGTGCACATAA 1127
Query 1138 GGTCCTTGAACTTTCTGACACAGACTTCCTTGTTTAGTTAAGCATCGTACAACTCTGTTT 1197
|||||| ||||||||||||||||||||||||||||||||| | || | |||||| |||||
Sbjct 1128 GGTCCTCGAACTTTCTGACACAGACTTCCTTGTTTAGTTATGTATAGCACAACTTTGTTT 1187
Query 1198 CATTTACAGATTGGAATTTGGCAGTGTTATCTGGTTATTTAAGATTCATTTTCTCTGTTA 1257
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1188 CATTTACAGATAGGAATTTGGCAGTGTTAACTGGTTATTTAAGATTCATTTTCTCTGTTA 1247
Query 1258 AAGCGAGATTGTAGTTGATGTGTTTTCTGAATGTTAAAGATTCCTTATCCATATGTGAAA 1317
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 1248 AAGCGAGATTGTAGTTGATGTGTTTTCTGAATGTAAAAGATTCCTTATCCATGTATGAAA 1307
Query 1318 ATTGAATAAAAAAGG 1332
|||||||| ||||||
Sbjct 1308 ATTGAATATAAAAGG 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5