BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471553
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13930.1 | Symbols: | Involved in response to salt stress. ... 889 0.0
> AT1G13930.1 | Symbols: | Involved in response to salt stress.
Knockout mutants are hypersensitive to salt stress. | chr1:4761042-4761725
FORWARD LENGTH=684
Length=684
Score = 889 bits (481), Expect = 0.0
Identities = 614/672 (91%), Gaps = 33/672 (5%)
Strand=Plus/Plus
Query 1 aaaacaaaacaaaaagttatattc-agacaaaagaaaaacaaaaaTGAATTTCATCTCCG 59
||||||||||||||| |||||||| ||| ||| || | ||||||||||||||||||||
Sbjct 9 AAAACAAAACAAAAAATTATATTCAAGA-GAAA-AAGGA-AAAAATGAATTTCATCTCCG 65
Query 60 ATCAGGTAAAGAACCTCTCGAGCTCGAA-ACCAGAGGAGCCGGACCAGAACATGCCAGTC 118
||||||||||||| ||||| ||||| || |||||||||||| ||||| |||| |||||||
Sbjct 66 ATCAGGTAAAGAAACTCTCAAGCTC-AACACCAGAGGAGCCAGACCACAACAAGCCAGTC 124
Query 119 GATGGAACCGAAACAGCCACAAGACCAGCTACCAACGCCGAGCTCATGGCAAGTGCCAAG 178
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 GAAGGAACCGAAACAGCTACAAGACCAGCTACCAACGCCGAGCTCATGGCAAGTGCCAAG 184
Query 179 GTTGTAGCTGAAGCTGCTCAAGCCGCAGCTAGTAACGAATCAGGCAAACTTGACAAGGGC 238
|||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 185 GTTGTAGCTGAAGCTGCTCAAGCCGCAGCTCGTAACGAATCAGACAAACTCGACAAGGGT 244
Query 239 AAAGTCGCCGGAGCCTCTGCTGATATCTTAGACGCCGCCGAGAAATACGGTAAGTTCGAT 298
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 245 AAAGTCGCCGGAGCCTCTGCTGATATCTTAGACGCTGCCGAGAAATACGGTAAGTTCGAT 304
Query 299 GAAAAGAGTAGCACTGGTCAGTACCTCGACAAGGCCGAGAAGTATCTCAACGACTACGAG 358
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 305 GAAAAGAGTAGCACTGGTCAGTACCTCGACAAGGCTGAGAAGTATCTCAACGACTACGAG 364
Query 359 TCGTCACAATCCACCGGCGCCGGTAGTGGTCCTCCTCCTCCGGCGAGTCAGGATGAGCCA 418
|||||||| |||||||| || ||| | | ||||||||||||| ||||||||| |||||||
Sbjct 365 TCGTCACACTCCACCGGTGCTGGT-G-G-TCCTCCTCCTCCGACGAGTCAGGCTGAGCCA 421
Query 419 GCAAGTCAGCCTGAGCCGGCGGCTAAGAAAGACGATGAAGAGTCTGGCGGTGGGCTTGGA 478
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 422 GCAAGTCAGCCTGAGCCGGCGGCTAAGAAAGACGATGAAGAGTCTGGTGGTGGGCTTGGA 481
Query 479 GGTTATGCCAAGATGGCTCAAGGTTTCTTGAAGTGATTTGATCTTTAATTGTTGTT--TC 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 482 GGTTATGCCAAGATGGCTCAAGGTTTCTTGAAGTGATTTGATCTTTAATTGTTGTTCATC 541
Query 537 ATTTTCGTAAT--TAAAT-AACTAA---GTATCGTTTGTGGACTAGTTTATGTTG-T--G 587
||||||||||| ||||| || ||| |||||||||||| |||||||||||||| | |
Sbjct 542 ATTTTCGTAATAATAAATTAAATAACTAGTATCGTTTGTG-ACTAGTTTATGTTGCTTCG 600
Query 588 -----G-----GG--AGTTACGAGTGAGTGTAATAACTTCTGGTGATCATGAATCTAATC 635
| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTATGTTTATGGGGAGTGACGAGTGAGTGTAATAACTTCTGGTGATCATGAATCTAATC 660
Query 636 CATCTTTGTTGT 647
||||||||||||
Sbjct 661 CATCTTTGTTGT 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31245639434
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5