BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471555
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13950.1 | Symbols: EIF-5A, ELF5A-1, ATELF5A-1, EIF5A | euka... 913 0.0
AT1G69410.1 | Symbols: ATELF5A-3, ELF5A-3 | eukaryotic elongati... 377 6e-104
> AT1G13950.1 | Symbols: EIF-5A, ELF5A-1, ATELF5A-1, EIF5A | eukaryotic
elongation factor 5A-1 | chr1:4773576-4774867 FORWARD
LENGTH=731
Length=731
Score = 913 bits (494), Expect = 0.0
Identities = 590/635 (93%), Gaps = 12/635 (2%)
Strand=Plus/Plus
Query 1 ATCCTCGTCGAAGCTCTCTGCTGAAACCATGTCCGACGAGGAGCATCATTTTGAGTCCAG 60
|||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct 28 ATCCTCGTCGAAGCTCGCTGCTGCAACCATGTCCGACGAGGAGCATCACTTTGAGTCCAG 87
Query 61 TGACGCCGGAGCTTCCAAAACTTACCCACAACAAGCTGGAACCATCCGTAAGAATGGTTT 120
|||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 88 TGACGCCGGAGCGTCCAAAACCTACCCTCAACAAGCTGGAACCATCCGTAAGAATGGTTA 147
Query 121 CATCGTCATCAAAGGTCGTCCCTGCAAGGTTGTTGAGGTTTCAACGTCAAAGACTGGCAA 180
||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 148 CATCGTCATCAAAAATCGTCCCTGCAAGGTTGTTGAGGTTTCAACCTCGAAGACTGGCAA 207
Query 181 GCATGGTCATGCTAAATGTCATTTTGTAGCTATAGATATCTTCACCAGCAAGAAACTTGA 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 208 GCATGGTCATGCTAAATGTCATTTTGTAGCTATTGATATCTTCACCAGCAAGAAACTCGA 267
Query 241 AGACATTGTTCCTTCTTCCCACAATTGTGATGTTCCTCATGTCAACCGTACTGATTATCA 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 AGATATTGTTCCTTCTTCCCACAATTGTGATGTTCCTCATGTCAACCGTACTGATTATCA 327
Query 301 ACTGATTGACATTTCTGAAGATGGATATGTCAGTTTGTTGACTGACAATGGTAGCACCAA 360
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 328 GCTGATTGACATTTCTGAAGATGGATATGTCAGTTTGTTGACTGATAACGGTAGTACCAA 387
Query 361 GGATGACCTCAAGCTCCCTACTGATGACACTCTGCTCCAACAGATCAAGAGTGGGTTTGA 420
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 388 GGATGACCTTAAGCTCCCTAATGATGACACTCTGCTCCAACAGATCAAGAGTGGGTTTGA 447
Query 421 TGATGGAAAAGATCTAGTGGTGAGTGTGATGTCAGCTATGGGAGAGGAACAGATAAATGC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 448 TGATGGAAAAGATCTAGTGGTGAGTGTGATGTCAGCTATGGGAGAGGAACAGATCAATGC 507
Query 481 TCTCAAGGACATTGGTCCCAAGTGAGACTAACAAAGCCGCCCCTTTGTTATAACTTATGA 540
||| |||||||| ||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 508 TCTTAAGGACATCGGTCCCAAGTGAGACTAACAAAGCCTCCCCTTTGTTATGA-----GA 562
Query 541 GcttcttcttcttctctttcttTAGGCTTCCGTTACTTATTGGAGATTATCTTGTGTTTG 600
||||||||||||| | || ||||||||| ||||| || |||||||||||||| ||||
Sbjct 563 --TTCTTCTTCTTCT-T--CTGTAGGCTTCCATTACTCATCGGAGATTATCTTGTTTTTG 617
Query 601 GGTTACTCTTTGTTTTGGATATT-AAACTTTTGTT 634
||| |||| | ||||||||||| |||||||||||
Sbjct 618 GGTGACTCCTA-TTTTGGATATTTAAACTTTTGTT 651
> AT1G69410.1 | Symbols: ATELF5A-3, ELF5A-3 | eukaryotic elongation
factor 5A-3 | chr1:26089202-26090386 FORWARD LENGTH=768
Length=768
Score = 377 bits (204), Expect = 6e-104
Identities = 398/491 (81%), Gaps = 15/491 (3%)
Strand=Plus/Plus
Query 20 GCTGAAACCATGTCCGACGAGGAGCATCATTTTGAGTCCAGTGACGCCGGAGCTTCCAAA 79
|||| || |||||| ||||| |||||||| || || ||||| |||||||||||||| ||
Sbjct 92 GCTG-AATCATGTCAGACGACGAGCATCACTTCGAATCCAGCGACGCCGGAGCTTCTAAG 150
Query 80 ACTTACCCACAACAAGCTGG-AACCATCCGT-AAGAATGGTTTCATCGTCATCAAAGGTC 137
||||| || |||||||| || || ||| ||| ||| |||| |||||||||||| || |
Sbjct 151 ACTTATCCTCAACAAGCCGGTAA-CATTCGTAAAG-GTGGTCACATCGTCATCAAGGGAC 208
Query 138 GTCCCTGCAAGGTTGTTGAGGTTTCAACGTCAAAGACTGGCAAGCATGGTCATGCTAAAT 197
||||||||||||| |||||||| || || || |||||||| ||||||||||| || || |
Sbjct 209 GTCCCTGCAAGGTGGTTGAGGTATCGACTTCGAAGACTGGGAAGCATGGTCACGCCAAGT 268
Query 198 GTCATTTTGTAGCTATAGATATCTTCACCAGC-AAGAAACTTGAAGACATTGTTCCTTCT 256
|||| ||||| || || |||||||| | | | ||||| |||||||| || |||||||||
Sbjct 269 GTCACTTTGTTGCCATTGATATCTTTA-CTTCTAAGAAGCTTGAAGATATCGTTCCTTCT 327
Query 257 TCCCACAATTGTGATGTTCCTCATGTCAACCGTACTGATTATCAACTGATTGACATTTCT 316
|||||||||||||||||||| ||||| || ||| ||||||||| ||||||| || |||
Sbjct 328 TCCCACAATTGTGATGTTCCACATGTGAATCGTGTTGATTATCAGTTGATTGATATCTCT 387
Query 317 GAAGATGGATATGTCAGT-TTGTTGACTGACAATGGTAGCACCAAGGATGACCTCAAGCT 375
|||||||| | ||| ||| || || ||||| ||||||||||| |||||||| || |||||
Sbjct 388 GAAGATGGCTTTGTTAGTCTTCTT-ACTGATAATGGTAGCACTAAGGATGATCTGAAGCT 446
Query 376 CCCTACTGATGACA-CTCTGCTC-CAACAGATCAAGAGTGGGTTTGATGATGGAAAAGAT 433
|| || ||||| | || | ||| || ||| |||||| ||| ||||| || || || |||
Sbjct 447 GCCAACAGATGA-AGCTTTACTCACA-CAGCTCAAGAATGGATTTGAGGAGGGTAAGGAT 504
Query 434 CTAGTGGTGAGTGTGATGTCAGCTATGGGAGAGGAACAGATAAATGCTCTCAAGGACA-T 492
| || ||| ||| ||||| || ||||||||||| ||||| |||||||||||| | |
Sbjct 505 ATTGTTGTGTCTGTCATGTCTGCAATGGGAGAGGAGCAGATGTGTGCTCTCAAGGA-AGT 563
Query 493 TGGTCCCAAGT 503
|||||||||||
Sbjct 564 TGGTCCCAAGT 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5