BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471557
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13960.1 | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr... 2964 0.0
AT4G12020.2 | Symbols: WRKY19, ATWRKY19, MAPKKK11, MEKK4 | prot... 771 0.0
> AT1G13960.1 | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr1:4776605-4779400
FORWARD LENGTH=1919
Length=1919
Score = 2964 bits (1605), Expect = 0.0
Identities = 1812/1908 (95%), Gaps = 30/1908 (2%)
Strand=Plus/Plus
Query 1 TTAATTTTGGGGATCGATGTCGGAAAAGGAAGAAGCTCCGTCGACATCGAAGTCTGCCGG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2 TTAATTTTGGGGATCGATGTCGGAAAAGGAAGAAGCTCCGTCGACATCGAAGTCCACCGG 61
Query 61 AGCTCCGTCGCGTCCGACTTTATCTCTTCCTCCACGGCCGTTTAGTGAGATGTTCTTTAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 AGCTCCGTCGCGTCCGACTTTATCTCTTCCTCCACGGCCGTTTAGTGAGATGTTCTTTAA 121
Query 121 CGGTGGCGTTGGATTTAGTCCTGGTCCGATGACTTTGGTCTCTAATATGTTCCCTGATTC 180
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 122 CGGTGGCGTTGGATTCAGTCCTGGTCCGATGACTCTGGTCTCTAATATGTTCCCTGATTC 181
Query 181 CGATGAGTTTAGGTCTTTCTCTCAGCTCCTTGCTGGAGCCATGACTTCTCC-G-G-C-G- 235
||||||||||||||||||||||||||| || |||||||||||| ||||||| | | | |
Sbjct 182 CGATGAGTTTAGGTCTTTCTCTCAGCTTCTCGCTGGAGCCATGTCTTCTCCAGCGACTGC 241
Query 236 A-------CTGCAACTGCTGCGACGGCTAGTGATTACCAGAGAATTAGTGAAGGGACTAA 288
| |||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 242 AGCTGCTGCTGCTGCTGCTGCGACGGCTAGTGATTACCAGAGACTTGGTGAAGGGACTAA 301
Query 289 TAGCTCGAGTGGTGATGTTGACCCGAGATTCAAGCAGAACAGACCAACCGGTTTGATGAT 348
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 302 TAGCTCTAGTGGTGATGTTGACCCGAGATTCAAGCAAAACAGACCAACCGGTTTGATGAT 361
Query 349 TTCTCAATCTCAATCGCCGTCGATGTTCACCGTACCGCCTGGTTTAAGCCCGGCCATGTT 408
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 362 TTCTCAATCTCAATCGCCGTCGATGTTCACCGTACCGCCTGGTTTAAGTCCAGCTATGTT 421
Query 409 GATGGATTCACCAAGCTTTTTGGGTCTTTTCTCTCCCGTTCAGGGAGCATATGGAATGAC 468
| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 422 GCTCGATTCACCAAGCTTTTTGGGTCTTTTCTCTCCCGTTCAGGGATCATATGGAATGAC 481
Query 469 TCATCAGCAAGCTCTAGCTCAAGTCACTGCTCAAGCAGTTCAAGCCAATGCCAATATGCA 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 ACATCAGCAAGCTCTAGCTCAAGTCACTGCTCAAGCAGTTCAAGCCAATGCCAATATGCA 541
Query 529 ACCACAAACCGAGTACCCTCCTTCCTCTCAAGTTCAATCATTTTCATCGGGTCAAGCTCA 588
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 542 ACCACAAACAGAGTACCCTCCTCCCTCTCAAGTTCAATCATTTTCATCGGGTCAAGCGCA 601
Query 589 GATCCCGACCTCGGCTCCACTACCAGCTCAAAGAGAAACCTCAGATGTAACCATCATCGA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 602 GATCCCGACCTCGGCTCCACTACCAGCTCAAAGAGAAACCTCAGATGTAACCATCATAGA 661
Query 649 GCACAGGTCACAACAGCCTCTAAATGTTGACAAACCAGCTGATGATGGCTATAACTGGCG 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GCACAGGTCACAACAGCCTCTAAATGTTGACAAACCAGCTGATGATGGCTATAACTGGCG 721
Query 709 AAAATACGGGCAAAAGCAAGTTAAAGGCAGCGAGTTTCCTCGAAGCTATTACAAGTGTAC 768
|||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 722 AAAATATGGGCAAAAGCAAGTTAAAGGTAGCGAGTTTCCACGAAGCTATTACAAGTGTAC 781
Query 769 TAATCCAGGATGTCCTGTCAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGA 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TAATCCAGGATGTCCTGTCAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGA 841
Query 829 AATCGTCTACAAAGGTCAGCACAATCATGAACCTCCTCAAAACACTAAGCGAGGAAACAA 888
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 842 GATTATCTACAAAGGTCAGCACAATCATGAACCTCCTCAAAACACTAAGCGAGGTAACAA 901
Query 889 AGATAGCACCGCAAATATAAATGGGAGTTCGGTACATAACAATCGCGGGAGTTCTGAATT 948
||||| |||||| |||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 902 AGATAACACCGCGAATATAAATGGGAGTTCGATAAATAACAATCGCGGGAGTTCTGAATT 961
Query 949 GGGGGCATCACAGTTTCAAACTAATAACTCCAACAAGACTAAGAGAGAGCAACATGAAGC 1008
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 962 GGGGGCATCACAGTTTCAAACTAATAGCTCCAACAAGACTAAGAGAGAGCAACATGAAGC 1021
Query 1009 AGCAAGTCAAGCTACGACAACAGAGCACTTGTCTGAGGCAAGTGACAGTGAAGAAGTTGG 1068
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1022 AGTAAGTCAAGCTACGACAACAGAGCACTTGTCTGAGGCAAGTGACGGTGAAGAAGTTGG 1081
Query 1069 TAATGGAGAAACTGATGTGAGAGAGAAAGATGAGAATGAGCCTGATCCCAAGAGAAGAAT 1128
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 TAATGGAGAAACTGATGTGAGAGAGAAAGATGAGAATGAGCCTGATCCCAAGAGAAGAAG 1141
Query 1129 TACAGAAGTTCGGGTTTCAGAACCAGCTGCTACTGCTTCACATAGAACCGTGACAGAGCC 1188
||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||
Sbjct 1142 TACAGAAGTTCGGATTTCAGAACCAGCTCCTGCTGCTTCACATAGAACTGTGACAGAGCC 1201
Query 1189 TCGAATTATTGTCCAAACAACTAGTGAAGTTGATCTTCTAGATGATGGATATAGGTGGCG 1248
| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TAGAATTATTGTCCAAACGACGAGTGAAGTTGATCTTCTAGATGATGGATATAGGTGGCG 1261
Query 1249 CAAATATGGACAGAAAGTTGTCAAAGGGAATCCTTATCCGAGGAGCTACTACAAGTGCAC 1308
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TAAATATGGACAGAAAGTTGTCAAAGGGAATCCTTATCCGAGGAGCTACTACAAGTGCAC 1321
Query 1309 AACACCAGGATGTGGTGTGAGGAAACATGTAGAGAGAGCAGCAACAGATCCAAAAGCTGT 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 AACACCAGGATGTGGTGTGAGGAAACATGTAGAGAGAGCAGCAACAGATCCAAAAGCTGT 1381
Query 1369 AGTAACAACATATGAAGGAAAACATAACCATGACCTTCCAGCAGCTAAATCAAGCAGCCA 1428
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1382 AGTAACAACATATGAAGGAAAACATAACCATGACCTTCCCGCTGCTAAATCAAGCAGCCA 1441
Query 1429 TGCCGCTGCAGCGGCACAGTTAAGGCCAGATAATCGACCTGGCGGTTTGGCTAACTTAAA 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 TGCCGCTGCAGCGGCACAGTTAAGGCCAGATAATCGACCTGGCGGTTTGGCTAACTTAAA 1501
Query 1489 TCAACAGCAGCAGCAGCAGCCCGTTGCGCGTCTAAGGCTGAAAGAAGAGCAAACAACTTG 1548
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1502 TCAACAGCAGCAGCAACAGCCCGTTGCGCGGCTAAGGCTTAAAGAAGAGCAAACAACTTG 1561
Query 1549 AGAGAAGAGAACTCT-GACCTTTGTTTTTTCATTATAAAGG-TCTCAAATTCCACTCATA 1606
|||||||| |||||| |||| |||||| ||||| ||| | | |||||||||||||| |
Sbjct 1562 AGAGAAGAAAACTCTTGACC---GTTTTT-CATTACAAAAGCTTTCAAATTCCACTCACA 1617
Query 1607 CACTTGTCTGAGAAATCTAGCAGTTTGCAGGAAAGTAAGAGCTTCA-GAAGGAGTTGTTG 1665
||||||||||| ||||||||||||||||||||||| || ||||||| || || |||| |
Sbjct 1618 CACTTGTCTGAAAAATCTAGCAGTTTGCAGGAAAGAAACAGCTTCAAGA-GG--TTGTAG 1674
Query 1666 TTCTTCTATGT-CTTGTGTAAAACTTAAAAAGCTTTTTAGG-TTTACAGATTTCTGTTTA 1723
||||||||||| || ||||||||||||||| |||||||||| ||| ||||||||||||||
Sbjct 1675 TTCTTCTATGTTCTGGTGTAAAACTTAAAA-GCTTTTTAGGGTTTTCAGATTTCTGTTTA 1733
Query 1724 CTAA-A----ATGTGAATTCTTTTGTACATGAGGAAGAAAATTACAGGGGGATATTTTGT 1778
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 CTAATACTGTATGTGAATTCTTTTGTACATGAGGAAGAAAATTACAGGGGGATATTTTGT 1793
Query 1779 GTTGTATCTTTTGTGTTATTGTTTCAGAAAAAGATAGGTTTTACATTTTGTGTATGAAAA 1838
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1794 GTTGTATCTTTTGTGTTATTGTTTCAGTAAAAGATAGGTCTTACATTTTGTGTATGAAAA 1853
Query 1839 TGAAAGTATTTGTTGTAATATCAAACTGTTTTCTTTTGTTTATTATTA 1886
||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1854 TGAAAGTATTTGTTGTAATATCAAACTTTTTTCTTTTGTTTATTATTA 1901
> AT4G12020.2 | Symbols: WRKY19, ATWRKY19, MAPKKK11, MEKK4 | protein
kinase family protein | chr4:7201656-7209648 FORWARD LENGTH=5867
Length=5867
Score = 771 bits (417), Expect = 0.0
Identities = 691/815 (85%), Gaps = 52/815 (6%)
Strand=Plus/Plus
Query 497 GCTCAAGCAGTTCAAGCCAATGCCAATATGCAACCACAAACCGAGTACCCTCCTTCCTCT 556
|||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 1201 GCTCAAACAGTTCAAGCCAATGCCAATATGCAACCTCAAACTGAGTACCCTTCTTCCTCT 1260
Query 557 -CAAGTTCAATCATTTTCATCGGGTCAAGCTCAGATCCCGACCTCGGCTCC--A--C-T- 609
| |||||||||||||||||||||||| |||||||||| ||||| ||||| | | |
Sbjct 1261 GC-GGTTCAATCATTTTCATCGGGTCAACCTCAGATCCCCACCTCAGCTCCGGATTCTTC 1319
Query 610 AC--C-AGCTCAAAGAG-AA-ACCTCAGATGTAACCATCATCGAGCACAGGTCACAACAG 664
|| | |||| ||| || || ||||||| | |||| ||||||||||||| ||||||||||
Sbjct 1320 ACTACTAGCT-AAA-AGTAATACCTCAGGTATAACTATCATCGAGCACATGTCACAACAG 1377
Query 665 CCTCTAAATGTTGACAAACCAGCTGATGATGGCTATAACTGGCGAAAA-TACGGGCAAAA 723
||||||||||||||||||| || | |||||||||||||||||| |||| || ||||||||
Sbjct 1378 CCTCTAAATGTTGACAAACAAGTTAATGATGGCTATAACTGGC-AAAAGTATGGGCAAAA 1436
Query 724 GCAAGTTAAAGGCAGCGAGTTTCCTCGAAGCTATTACAAGTGTACTA-ATCCAGGATGTC 782
| |||||||||||||| ||||||||| ||||||||||||||| || | ||| ||||||||
Sbjct 1437 GAAAGTTAAAGGCAGCAAGTTTCCTCTAAGCTATTACAAGTGCAC-ATATCTAGGATGTC 1495
Query 783 CTGT-CAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGAAATCGTCTACAAA 841
|| | ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1496 CT-TCCAAGAGGAAGGTTGAGAGATCTCTTGATGGACAAGTAGCAGAAATCGTCTACAAA 1554
Query 842 GGTC-AGCACAATCATGAACCTCCTCAAAACACTAAGCGAGGAAACAAAGATAGCACCGC 900
| || | |||||||| ||||||||| || | | ||| || ||| | | ||||||| |
Sbjct 1555 GATCGA-CACAATCACGAACCTCCT-AA--C-C-AAG-GA--AAAGATGG-TAGCACCAC 1604
Query 901 AAATATAAATGGGAGTTCGGTACATAACAATCGCGGGAGTTCTGAATTGGGGGCATCACA 960
| || ||| |||||||||| ||| | |||| || ||| ||||||||| ||||||||
Sbjct 1605 ATATCTAAGTGGGAGTTCGACACACATCAATTGCATGAGCTCTGAATTGACAGCATCACA 1664
Query 961 GTTTCAAACTAATAACTCCAACAAGACTAAGAGAGAGCAACATGAAGCAGCAAGTCAAGC 1020
|||| | || | | ||||||||||||| ||||||||| ||||||||||||| |||
Sbjct 1665 GTTT-AG-CT-----C-C-AACAAGACTAAGATAGAGCAACAGGAAGCAGCAAGTCTAGC 1715
Query 1021 TACGACAACAGAGCACTTGTCTGAGGCAAGTGACAGTGAAGAAGTTGGTAATGGAGAAAC 1080
|||||||| |||| || |||||||||||||||||| |||||||| |||||||||||||
Sbjct 1716 TACGACAATAGAGTACATGTCTGAGGCAAGTGACAATGAAGAAGACAGTAATGGAGAAAC 1775
Query 1081 TGATGTGAG--AGAGAAAGATGA-GAATGAGCCTGATCCCAAGAGAAGAATTACAGAAGT 1137
| | ||||| |||||||||||| || |||||||| || ||||||||||||||||||||
Sbjct 1776 T-A-GTGAGGGAGAGAAAGATGAAGAC-GAGCCTGAACCAAAGAGAAGAATTACAGAAGT 1832
Query 1138 TCGGGTTTCAGAACCAGCTGCTACTGCTTCACATAGAACCGTGACAGAGCCTCGAATTAT 1197
|| |||||| |||| ||||| | ||||||| |||||||||||| ||||||| | ||||
Sbjct 1833 TCAGGTTTCGGAACTAGCTG--A-TGCTTCAGATAGAACCGTGAGAGAGCCTAGGGTTAT 1889
Query 1198 TGTCCAAACAACTAGTGAAGTTGATC-TTCTAGATGATGGATATAGGTGGCGCAAATATG 1256
| |||||||||| |||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 1890 TTTCCAAACAACGAGTGAAGTTGATAATT-TAGATGATGGATATAGGTGGCGGAAATATG 1948
Query 1257 GACAGAAAGTTGTCAAAGGGAATCCTTATCCGAGG 1291
||||||||||||| ||||||||||||||||| |||
Sbjct 1949 GACAGAAAGTTGTTAAAGGGAATCCTTATCCAAGG 1983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93373013700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5