BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471558
Length=2059
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13970.1 | Symbols: | Protein of unknown function (DUF1336)... 2998 0.0
> AT1G13970.1 | Symbols: | Protein of unknown function (DUF1336)
| chr1:4779523-4782542 REVERSE LENGTH=2050
Length=2050
Score = 2998 bits (1623), Expect = 0.0
Identities = 1914/2047 (94%), Gaps = 50/2047 (2%)
Strand=Plus/Plus
Query 30 aca-agaaacaaatagaggcagagagaagaagaaagacgaaacagagGAttttttttttC 88
||| |||||||||||||||||||||| |||||||||||||||||||||| |||| |
Sbjct 37 ACAGAGAAACAAATAGAGGCAGAGAGCAGAAGAAAGACGAAACAGAGGA---TTTTCAT- 92
Query 89 AAAGAAtcctctttcttcctcctttcttcgccttcctctcttcttctcctggttagtttt 148
| |||||||||||||||||||||||||||||||| || || | |||| | | | ||
Sbjct 93 AGAGAATCCTCTTTCTTCCTCCTTTCTTCGCCTT-CT-TC-TGTTCT--T--CT--TCTT 143
Query 149 cttctgggtcttGAAGATACATGAATA-AACATCTCATTGTTATGAATGTTGTTGATGCA 207
|| |||||||||||||||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 144 CTCCTGGGTCTTGAAGATACATGAA-ACAACATCTCATTGTTATGAA---TGTTGATGCA 199
Query 208 TTCTTTTATGTAAACTTAACTTCTTACAGGTGACCTCTCTGAAAGATTATAAGG-T-AAA 265
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 200 TTCTTTTATGTAAACTTAACTTTTTACAGGTGACCTCTCTGAAAGATTGTAAGGTTCCTT 259
Query 266 AGATTCAATCtttttttCTATTT--TCAGA-CAAGATCA-TTAGAAATTCT-CAAAA-AA 319
| | ||| || |||| ||| | | | || || | ||||||||||| ||||| ||
Sbjct 260 ACA-AAAAT-TTGATTTC-GTTTGGTGA-ATGAA-AT-AGTTAGAAATTCTCCAAAACAA 313
Query 320 GAAAATGGGTGGCTGCGTTTCTTCCCAGAGAAAACTGAGCAACAAGCTTCAACAGAAGAA 379
|| ||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 314 -AATATGGGTGGCTGTGTTTCTTCTCAGAGAAAACTCAGTAACAAGCTTCAACAGAAGAA 372
Query 380 GCAGAAACGCGGCAGATCTGGCAAATGCCGGTCCAAAATCTCGGCTTCTATGCCCGATGT 439
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 373 GCAGAAACGCGGCAGATCTGGCAAATGTCGGTCCAAAATATCGGCTTCTATGCCCGATGT 432
Query 440 TCCTATGAAACGCATGAGTAACGCGAGTGTCAGGGATTTTGCGGTGAGCGAATATGTTCA 499
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 433 TCCTATGAAACGCATGAGTAATGCGAGTGTTAGGGATTTTGCGGTGAGCGAATATGTTCA 492
Query 500 TCTTGATTTCGACAATTGCGCAGCCAAGATGATGTGTAAGAGAGCTGCAGAGATGTCTAA 559
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 493 TCTTGATTTCGACAATTGTGCAGCCAAGATGATGTGTAAGAGAGCT---GAGATGTCTAA 549
Query 560 TGCTAACTTCCATTTAACTCAGCTTCAATGGAACTGCAGCCAAATCGATGGAAACCGAAT 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TGCTAACTTCCATTTAACTCAGCTTCAATGGAACTGCAGCCAAATCGATGGAAACCGAAT 609
Query 620 TTCACATGAGGAGGCTTGGTATGATTCTTTTAGCTACATCGATTCTGATTCTGATGATGG 679
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 610 TTCACATGAGGAGGCTTGGTATGATTCCTTTAGCTACATCGATTCTGATTCTGATGATGG 669
Query 680 TTCAAATAGTAGTGTCTTTGAAGATGCAAATGCTTCTGCAATGGGACAAGTGATTCAGTA 739
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TTCAAATAGTAGTGTCTTCGAAGATGCAAATGCTTCTGCAATGGGACAAGTGATTCAGTA 729
Query 740 TGAAGAATTCTACGAAAGTTACCTGAAAATAGATGGAAACAAAGGTGAGACATACTCAAG 799
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 730 TGAAGAATTCTACGAAAGTTACCTGAAAATAGATGGAAACAAAGGTGAGACTTACTCGAG 789
Query 800 CAAGAATGAAGTTAGCATAAAGAGAAACCAAGTGGCTGATGAATCTCATCATGAAACCTT 859
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 790 CAAGAATGAGGTTAGTATAAAGAGAAACCAAGTGGCTGATGAATCTCACCATGAAACCTT 849
Query 860 CAAGACTACTACTTGTGAAGATCATCAAGATCACAGGAAGAAATCATCAAAAGTTGTTAT 919
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 850 CAAGACTACTACTTGTGAAGATCATCAAGATCACAGAAAGAAATCATCAAAAGTTGTTAT 909
Query 920 GGTTTCTGTGCGAAGAACATCTATTGATAGCAAATCAACAGCATCTGAATTCTCTTCAGC 979
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 910 GGTTTCTGTGAGAAGAACATCTATTGATAGCAAATCAACACCATCTGAATTCTCTTCAGC 969
Query 980 TGAGAAGCTCTTGTATCGTCCAAAAGCCGGTTCTGTGATTCAACGTTCTTTGGGAGAGAA 1039
||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 970 TGAGAAGCTCTTGTACCGTCCAAAAGCCGGTTCTATGATTCAACGTTCTTTAGGAGAGAA 1029
Query 1040 GCTGACCAGTCAAGGAAGCTGGTCAGAAGTTTCTCCGTCGAGTTTCAAGCTCCGTGGACT 1099
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1030 GATGACCAGTCAAGGAAGTTGGTCAGAAGTTTCTCCGTCGAGTTTCAAGCTCCGTGGATT 1089
Query 1100 GAATTTCTTCAGAGACAAGCAAAAGTGTCCTGCACCAAATTGTAGTCCTTACATACCAAT 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 GAATTTCTTCAGAGACAAGCAAAAGTGTCCTGCACCAAATTGTAGTCCTTACATACCAAT 1149
Query 1160 TGGAGTCGATCTTTTCGCATGTCCTAAAAAGATCAACCACATTGCTCAACACATTGAGCT 1219
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TGGAGTCGACCTTTTTGCATGTCCTAAAAAGATCAACCACATTGCTCAACACATTGAGCT 1209
Query 1220 TCCTAATCCGAAACCGGCGTCATCACAAGTCTGCGACATCCCCAATCTCTTGATTGTGAA 1279
||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1210 TCCTAATTTGAAACCGGCATCATCACAAGTCTGCGATATCCCCAATCTTTTGATAGTGAA 1269
Query 1280 CATCCAGCTTCCAATGTATCCAACCTCTATGTTTGGTGACTATGATGGTGAAGGACATAG 1339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1270 CATCCAGCTTCCAATGTATCCAACCTCTATGTTTGGTGACTATGATGGTGAAGGACTTAG 1329
Query 1340 CTTAGTCTTGTACTTCAAACGCAATGAGAATTATCACAAAGAAATCTCATCTCACTTTAA 1399
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1330 CTTAGTATTGTACTTCAAACGCAATGAGAACTATCACAAAGAAATCTCATCTCACTTTAA 1389
Query 1400 AGAAACCATCAAGAGATTTATGGATGATGAAATGGAGAAAGTCAAAGGATTCACAAGAGA 1459
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1390 AGAAACCATCAAGAGATTCATGGAAGATGAAATGGAGAAAGTAAAAGGATTCACAAGAGA 1449
Query 1460 ATCAACAGTTCCATTCAGAGAGAGGTTAAAGATCATGGCAGGTTTGGTCAATCCTGAGGA 1519
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1450 ATCAACAGTTCCATTCAGAGAGAGGTTAAAGATCATGGCAGGTTTGGTAAATCCTGAGGA 1509
Query 1520 TCTTC-AGCTAAGTTCTACTGAGAGAAAACTCATCACAGCTTACAATGATAGACCGGTTC 1578
| ||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1510 T-TTCCAGCTAAGTTCTACTGAGAGAAAACTTATCACAGCTTACAACGATAGACCGGTTC 1568
Query 1579 TTTCTCGTCCGCAACACGATTTCTTTCAGGGACCAAACTACTTTGAGATCGATTTGGATA 1638
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1569 TTTCTCGTCCGCAACACGATTTCTTTCAGGGACCAAACTACTTTGAGATAGATTTGGATA 1628
Query 1639 TACACAGATTCAGTTACATATCGAGGAAAGGACTCGAATCTTTCAGGGATCGTATCAAGA 1698
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TACACAGATTCAGTTACATTTCGAGGAAAGGACTCGAATCTTTCAGGGATCGTATCAAGA 1688
Query 1699 ATGGGATTCTTGATCTGGGTTTAACTATTCAGGCTCAATCACCAGAGGAACTGCCAGAGC 1758
| |||||||||||| |||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 1689 ACGGGATTCTTGATTTGGGATTAACAATTCAGGCTCAATCACCAGAGGAACTTCCAGAGC 1748
Query 1759 AAGTACTGTGTTGTGTCAGGCTGAACAAGATTGATTTCGTGAATCACGGACAGATTCCAA 1818
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1749 AAGTACTGTGTTGTGTCAGGCTGAACAAGATTGATTTCGTGAATCACGGACAAATTCCAA 1808
Query 1819 CGCTTTTAACTAACAAACAATGATGAGATTTCGGTACAAAATAACACAGAGAGAGA--CA 1876
||||||||||||||||||||||| | ||| | |||| ||||||||||||||||| ||
Sbjct 1809 CGCTTTTAACTAACAAACAATGAAGTGATCAC--TACATAATAACACAGAGAGAGAGACA 1866
Query 1877 AAGATCAATCAATCAATCAATGAGGAGAGCaaaaaaaaagataaaaagcaaaaaCAGAGA 1936
|||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1867 AAGATCAATCAATCAATCAATGGGGAGAGCAAAAAAA--GACAAAAAGCAAAAACAGAGA 1924
Query 1937 ACGTTTTCACATATTTTGTATTGC--AGAGACAAAAGAAGAAGATAAAAT-CAAT-GTCT 1992
|||||||||||||||| |||||| |||||||||||||||||||||||| |||| ||||
Sbjct 1925 ACGTTTTCACATATTT-GTATTGTTGAGAGACAAAAGAAGAAGATAAAATTCAATTGTCT 1983
Query 1993 TATTTGGAAACATGATTTGCTCCGGAATTTATTAATCTCATGAAAAAGATTCATTTGTAC 2052
| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1984 TTTTTGGAAACAAGATTTGCTCGGGAATTTATTAATCTCATGAAAAAGATTCATTTGTAC 2043
Query 2053 AAATGTC 2059
|||||||
Sbjct 2044 AAATGTC 2050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102057707985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5