BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471561
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14000.1 | Symbols: VIK | VH1-interacting kinase | chr1:4797... 2490 0.0
AT1G14010.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 111 2e-23
> AT1G14000.1 | Symbols: VIK | VH1-interacting kinase | chr1:4797358-4800283
FORWARD LENGTH=1805
Length=1805
Score = 2490 bits (1348), Expect = 0.0
Identities = 1508/1581 (95%), Gaps = 27/1581 (2%)
Strand=Plus/Plus
Query 199 TCATCTGAATCGG-TTTGAGATGAGCTCCGATTCACCGGCGTCTGGAGACGGTGGCGAAC 257
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 229 TCATCTGAATCGGTTTTGAGATGAGCTCCGATTCACCGGCGGCTGGAGACGGTGGCGAAC 288
Query 258 AAGCCGCTGCAGGAACAAGCGTGCCTTCACCGTCTTACGACAAACAAAAGGAGAAGGCAC 317
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 289 AAGCCGCTGCGGGAACAAGCGTGCCTTCACCTTCATACGACAAACAAAAGGAGAAGGCAC 348
Query 318 GTGTGAGTAGAACATCTCTGATTCTATGGCACGCGCACCAAAACGACGCAGCTGCAGTTC 377
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 349 GTGTGAGTAGAACATCTCTGATACTATGGCACGCGCACCAAAACGACGCAGCTGCAGTTC 408
Query 378 GGAAACTCTTGGAGGAAGATCCGACTTTGGTTCACGCTAGAGACTATGACAAACGAACGC 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GGAAACTCTTGGAGGAAGATCCGACTTTGGTTCACGCTAGAGACTATGACAAACGAACGC 468
Query 438 CTCTTCACGTTGCGTCGCTTCATGGATGGATCGATGTTGTTAAATGTCTGCTTGAGTTTG 497
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 CTCTCCACGTGGCGTCGCTTCATGGATGGATCGATGTTGTTAAATGTCTGCTTGAGTTTG 528
Query 498 GTGCTGATGTCAACGCTCAGGATAGGTGGAAGAACACGCCTCTGGCTGATGCAGAAGGAG 557
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 529 GTGCTGATGTCAATGCTCAGGATAGGTGGAAGAACACGCCACTGGCTGATGCAGAAGGAG 588
Query 558 CTAGGAAGCAGAAAATGATTGAATTGCTGAAATCTCATGGTGGTTTATCTTATGGTCAAA 617
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 589 CTAGGAAGCAGAAAATGATTGAACTGCTGAAATCTCATGGTGGTTTGTCTTATGGTCAAA 648
Query 618 ACGGAAGTCACTTTGAACCAAAGCCTGTGCCACCACCAATTCCAAAGAAATGTGACTGGG 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 ACGGAAGTCACTTTGAACCAAAGCCTGTGCCACCACCAATTCCAAAGAAATGTGACTGGG 708
Query 678 AAATTGAACCTGCTGAGCTGGATTTTTCAAATGCCGCTATGATTGGAAAGGGTTCATTTG 737
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 709 AAATTGAACCTGCTGAGCTGGATTTTTCAAATGCTGCAATGATTGGAAAGGGTTCATTTG 768
Query 738 GTGAGATTGTGAAAGCCTATTGGAGAGGAACACCGGTAGCTGTGAAACGTATTCTTCCTT 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GTGAGATTGTGAAAGCCTATTGGAGAGGAACACCGGTAGCTGTGAAACGTATTCTTCCTT 828
Query 798 CTCTTTCAGATGATAGACTGGTTATTCAGGACTTCAGGCACGAGGTTGATTTGTTAGTTA 857
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 829 CTCTTTCAGATGATAGACTGGTTATTCAGGACTTCAGGCATGAGGTTGATTTGCTAGTTA 888
Query 858 AGCTTCGCCATCCGAATATAGTGCAATTCTTAGGAGCGGTAACCGAAAGAAAGCCCCTTA 917
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 889 AGCTTCGCCATCCAAATATAGTCCAATTCTTAGGAGCGGTAACCGAAAGAAAGCCCCTTA 948
Query 918 TGTTAATCACAGAATACTTGCGCGGGGGAGATCTTCATCAATACCTCAAGGAGAAGGGCG 977
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TGTTAATCACTGAGTACTTACGCGGGGGAGATCTTCATCAATACCTCAAGGAGAAGGGCG 1008
Query 978 GTCTTACTCCAGCAACTGCTGTCAACTTTGCGTTGGATATCGCGAGAGGAATGACATATC 1037
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1009 GTCTTACTCCAACAACTGCTGTCAACTTTGCTTTGGATATCGCGAGAGGAATGACATATC 1068
Query 1038 TTCACAATGAACCTAATGTTATCATTCACCGAGATCTTAAACCAAGGAACGTTCTTCTGG 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TTCACAATGAACCTAATGTTATCATTCACCGAGATCTTAAACCAAGGAACGTTCTTCTGG 1128
Query 1098 TTAATTCCAGTGCAGACCACTTAAAAGTTGGTGACTTTGGACTTAGTAAGCTCATAAAGG 1157
||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 1129 TTAATTCTAGTGCAGACCACTTGAAAGTTGGAGACTTTGGACTTAGTAAGCTCATAAAAG 1188
Query 1158 TTCAAAACTCTCATGATGTCTACAAAATGACTGGAGAAACCGGAAGCTATCGTTACATGG 1217
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1189 TTCAAAACTCTCATGATGTCTACAAAATGACTGGAGAAACAGGAAGCTATCGTTATATGG 1248
Query 1218 CTCCTGAAGTATTCAGGCATAGAAGATACGATAAGAAAGTCGATGTCTTCTCCTTTGCAA 1277
||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1249 CTCCTGAAGTATTCAAGCATAGAAGATATGACAAGAAAGTCGATGTCTTCTCCTTTGCAA 1308
Query 1278 TGATACTTTACGAGATGCTTGAAGGAGAGCCACCGTTTGCGAACCATGAGCCGTATGAAG 1337
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1309 TGATACTTTACGAGATGCTTGAAGGAGAGCCACCATTTGCGAACCATGAGCCATATGAAG 1368
Query 1338 CAGCCAAACATGTATCTGATGGACACAGACCTACATTCCGTTCCAAAGGATGCACACCAG 1397
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1369 CAGCCAAACATGTATCTGATGGACATAGACCTACATTCCGTTCCAAAGGATGCACACCAG 1428
Query 1398 ATCTAAGAGAGTTAATTGTGAAATGCTGGGACGCAGACATGAACCAGAGACCGTCGTTTC 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 ATCTAAGAGAGTTAATTGTGAAATGCTGGGACGCAGACATGAACCAGAGACCGTCGTTTC 1488
Query 1458 TGGACATCCTCAAGAGACTTGAAAAGATCAAGGAAACTCTACCATCAGATCACCATTGGG 1517
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 TGGACATTCTCAAGAGACTTGAAAAGATCAAGGAAACTCTACCATCAGATCACCATTGGG 1548
Query 1518 GCTTATTCACTTCATAATACACCAAATC-ATTATTTAAGAACAAAAACAACCAGACACAC 1576
|||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||
Sbjct 1549 GCTTATTCACTTCATAATACACAAAATCCATTATTTAAGCACAAAAACAACCAGAAACAA 1608
Query 1577 GAAAGCAACAAT-TCTGTTTGCCTTATTATTATTCTCTGTTTC-TTGTCTTTTGTAAAGA 1634
||||| | || | |||||||||||||||| || ||||||||| || |||||||||||||
Sbjct 1609 GAAAGTATCATTCTCTGTTTGCCTTATTA--AT-CTCTGTTTCATT-TCTTTTGTAAAGA 1664
Query 1635 TTGTTTCtttttttCATCTTTTCATTTGCTTTAAAAGAGTGTGAGATA-AAA------A- 1686
|||||||||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 1665 TTGTTTCTTTTT--CATCTTTTCATTTGCTTTAAAAGAGTGTGAGATAGAAAGCTTTTAT 1722
Query 1687 -------A--TGGATTGGATTGAGTTTGCAGGTTAATGAGATGTTAAGATCATATCAGAC 1737
| ||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 1723 TGTTGTTACATGGATTGGATTGAGTTTGCAGGTTAATGAGAAGTTCATATCATATCAGAC 1782
Query 1738 AGGATAAAGTGTCTGTTTCCG 1758
|||||||| ||||||||||||
Sbjct 1783 AGGATAAAATGTCTGTTTCCG 1803
> AT1G14010.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr1:4800169-4801850 REVERSE LENGTH=915
Length=915
Score = 111 bits (60), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 1687 ATGGATTGGATTGAGTTTGCAGGTTAATGAGATGTTAAGATCATATCAGACAGGATAAAG 1746
|||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 874 ATGGATTGGATTGAGTTTGCAGGTTAATGAGAAGTTCATATCATATCAGACAGGATAAAA 815
Query 1747 TGTCTGTTTCCG 1758
||||||||||||
Sbjct 814 TGTCTGTTTCCG 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86947343940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5