BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471563
Length=1898
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14020.1 | Symbols: | O-fucosyltransferase family protein |... 3000 0.0
AT2G03280.2 | Symbols: | O-fucosyltransferase family protein |... 950 0.0
> AT1G14020.1 | Symbols: | O-fucosyltransferase family protein
| chr1:4802720-4805375 FORWARD LENGTH=1974
Length=1974
Score = 3000 bits (1624), Expect = 0.0
Identities = 1814/1905 (95%), Gaps = 15/1905 (1%)
Strand=Plus/Plus
Query 1 AAGGAGAGAAGAAGCATTCCATTTCGCGTTTGTCATCTAATTTCAATTTCTGACATCTCA 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 78 AAGGAGAGAAGAAGCATTTCATTTCGCGTTTGTCATCTAATTTCAATTTCTGACATCTCA 137
Query 61 CAAGATCGGAGAAATTTAGGTTTTAGTAAATTTTTTAATCTCATGAAGCGGCGACGACGA 120
|||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||
Sbjct 138 CAAGATCGGAGAAATTTAGGTTATAGT-AA--TTTTATTCTCATGAAGCGGCGACGACGA 194
Query 121 TCGTCGGAGGAGGGAGATGGAAGTTAAATCGGAGAGTGATAATACTCAGGCGCGAAGCGA 180
|||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct 195 TCGTCGGAGGAGGGAGATGGAAGTTAGATCGGAGAGTAATATTACTCAGGCGCGAAGCG- 253
Query 181 TAATAAGCTTCCGCCTCCGTCGGCTGTTCTGAAGCCTCGTGTTCAAGTATGGTTCGTTAG 240
|||||||||||| |||| |||| |||| |||||||||||| |||||||||||||||||
Sbjct 254 --ATAAGCTTCCGCTTCCGCCGGCAGTTCCGAAGCCTCGTGTACAAGTATGGTTCGTTAG 311
Query 241 AGTTTGCTCCAGCATTTTGGTTTGGACGTGTTTGGTTCAGCTTTTCGCCGCCGGTGAGCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AGTTTGCTCCAGCATTTTGGTTTGGACGTGTTTGGTTCAGCTTTTCGCCGCCGGTGAGCT 371
Query 301 TTGGCGTTCCCGGATCTTCACTGGTTTTACCAATCAGATTTCCAGATTCTCTGCCCCTGT 360
||||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 372 TTGGCATTCCCGGATCTTCACTGGTTTAACCAATCAGATTTCTAGATTCTCAGCCCCTGT 431
Query 361 CGAGCCAGTTCCTTTGCCGCCTCATCTACCTCCTCCGAGAAATTATACAAGCAATGGTAT 420
||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||
Sbjct 432 TGAGCCAGTTCCATTGCCACCTCCTCTACCTCCTCCGAGGAATTATACAAGCAATGGTAT 491
Query 421 TCTACTTGTATCCTGTAATGGTGGATTGAATCAAATGCGATCCGCGATATGTGATATGGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TCTACTTGTATCCTGTAATGGTGGATTGAATCAAATGCGATCCGCGATATGTGATATGGT 551
Query 481 GACTATTGCTCGGTTACTAAATCTCACTCTCGTTGTTCCAGAGCTTGACAAAACATCATT 540
|||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 552 GACTGTTGCTCGGTTATTGAATCTCACTCTCGTTGTTCCAGAGCTTGACAAAACATCTTT 611
Query 541 CTGGGCTGATCCTAGTGGTTTTGAGGATATTTTTGATGTGACACATTTCATTGATTCATT 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 612 CTGGGCTGATCCTAGTGGTTTTGAGGATATTTTTGATGTGAGACATTTCATTGATTCATT 671
Query 601 GAGAGATGAAGTTCGGATTTTAAGGAAACTTCCAAAACGGTTTACAAGGAAGTATGGATA 660
||||||||||||||||| ||||||| ||||| |||||||||| || |||||||||||
Sbjct 672 AAGAGATGAAGTTCGGATCTTAAGGAGGCTTCCTAAACGGTTTAGTAGAAAGTATGGATA 731
Query 661 TCAAATGTTCGAAATGCCTCCTGTGAGCTGGTCTGATGAAAAATATTACTTGAAGCAGAT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 732 TCAAATGTTCGAAATGCCTCCTGTGAGCTGGTCTGATGAAAAATATTACTTGAAGCAGGT 791
Query 721 ATTGCCTCTTTTCAGCAAACATAAAGTTATACACTTCAATAGGACTGATACCCGCCTGGC 780
||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 792 ATTGCCTCTCTTCAGCAAGCATAAAGTTGTACACTTCAATAGGACTGATACCCGCCTGGC 851
Query 781 AAACAATGGTCTTCCGCTCGCACTCCAGTGGCTCAGGTGCCGGGTGAACTTTCAGGGACT 840
||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 852 AAACAATGGTCTTCCGCTCTCTCTCCAGTGGCTCAGGTGCCGGGTGAATTTTCAGGGACT 911
Query 841 AAAGTTCACTCCACAGCTTGAGGCTTTGGGAGCTAAGTTAGTTCGGATTCTACAACAAAG 900
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 912 AAAGTTCACTCCACAGCTTGAGGCTTTGGGATCTAAGTTAGTTCGGATTCTACAACAAAG 971
Query 901 AGGGCCATTTGTGGTTTTGCATCTGAGATATGAGATGGACATGTTAGCTTTCTCTGGCTG 960
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 AGGGCCATTTGTGGCTTTGCATCTGAGATATGAGATGGACATGTTAGCTTTCTCTGGCTG 1031
Query 961 CACTCATGGTTGCACTGAGGAAGAAGCTGAAGAGCTAAAAAAGATGAGGTACACATATCC 1020
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1032 CACTCATGGTTGCACTGAGGAAGAAGCGGAAGAGCTAAAAAAGATGAGGTACACATATCC 1091
Query 1021 CTGGTGGAGAGAGAAGGAGATAGTCTCAGAGGAGAGGAGAGCGCAAGGGCTGTGTCCTTT 1080
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1092 CTGGTGGAGAGAGAAGGAGATAGTCTCAGAGGAGAGGAGGGCGCAAGGGCTGTGTCCTTT 1151
Query 1081 GACGCCAGAGGAGGTGGCCTTGGTTTTAAAAGCATTGGGATTCGAGAAAAATACACAGAT 1140
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1152 GACGCCAGAGGAGGTGGCCTTGGTATTAAAAGCGTTGGGATTTGAGAAAAATACACAGAT 1211
Query 1141 ATACATTGCAGCTGGTGAGATTTATGGGGGCGAGCATAGACTATCAGTTTTAAGGAAAGC 1200
|||||||||||||||||||||||||||| |||||||||||||||| || |||||| ||||
Sbjct 1212 ATACATTGCAGCTGGTGAGATTTATGGGAGCGAGCATAGACTATCCGTGTTAAGGGAAGC 1271
Query 1201 ATTCCCGAGAATTGTAAAGAAGGAAATGCTATTGGAGTCAACGGAGCTACAACAGTTTCA 1260
|||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 1272 ATTCCCGAGAATTGTAAAGAAGGAAATGCTATTGGAGTCAGCAGAGCTGCAACAGTTTCA 1331
Query 1261 GAACCATTCGTCTCAAATGGCTGCTCTAGATTTCATGGTATCTGTGGCCAGCAACACATT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1332 GAACCATTCGTCTCAAATGGCTGCTCTAGATTTCATGGTATCTGTGGCCAGCAACACTTT 1391
Query 1321 TATTCCTACGTATGATGGAAACATGGCAAAAGTCGTGGAAGGTCATCGGAGATACCTTGG 1380
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1392 TATTCCTACGTATGATGGAAACATGGCAAAAGTCGTGGAAGGTCATCGTAGATACCTTGG 1451
Query 1381 GTATAAGAAGACAATCCTGCTTGACCGTAAGAGACTCGTGGAGCTACTAGACTTACATCA 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 ATATAAGAAGACAATCCTGCTTGACCGTAAGAGACTCGTGGAGCTACTAGACTTACATCA 1511
Query 1441 CAACAAGACCCTCACGTGGGATCAGTTTGCAGTAGCCGTCAAGGAAGCCCATGAGAGACG 1500
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1512 CAACAAGACCCTCACGTGGGATCAGTTTGCAGTAGCAGTCAAGGAAGCCCATGAGAGACG 1571
Query 1501 AGCAGGAGCACCTACACATCGAAGAGTAATCTCTGACAAACCTAAGGAGGAAGATTACTT 1560
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 AGCAGGAGCACCTACTCATCGAAGAGTAATCTCTGACAAACCTAAGGAGGAAGATTACTT 1631
Query 1561 CTACGCAAACCCTCAAGAATGTCTTTGTGAAGGTACAAATTGCCACGACCTATTTGGC-A 1619
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1632 CTACGCAAATCCTCAAGAATGTCTTTGTGAAGGTACAAATTGCCACGACCTGTTTGGCCA 1691
Query 1620 TAGAAATTTAACACATTGAAGTCATGTTTT-AGCATATTAT--CTCATTGCTTCTGCAAG 1676
|||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct 1692 TAGAAATTTAACACATTGAAGTCATGTTTTTAGCATATTATATCTCATTGCTTCCGCAAG 1751
Query 1677 GGGACGGCATGCCAAACACTTAAACGGGAGCTGCATAGTTCCTTCCTTGAGtttttacat 1736
|||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| |||
Sbjct 1752 AGGACGGCATGTCAAACACTTGAACGGGAGCTGCATAGTTCCTTCCCTGAGTTTTTCCAT 1811
Query 1737 ttttgtttgtaatttttt-caattttCCTGCATAGTTGCTGATCTTGATTTATTTAATTT 1795
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1812 TTTTGTTTGTAATTTTTTTCAATTTTCCTGCATAGTTGCTGATCTTGATTTATTTAGTTT 1871
Query 1796 TATGTAAGTTAAGATGTAACTAAAT-GAAGATTATGTCTCAAT-TTATACAATTTCAAAA 1853
|| |||| |||||||||||||||| ||||||||||||||| | ||||| ||||||||||
Sbjct 1872 TACGTAAATTAAGATGTAACTAAAAAGAAGATTATGTCTCA-TCTTATAGAATTTCAAAA 1930
Query 1854 AAGCAAGCTTTTGGCAAGAGCCCAACATACAAATTGTGGTCTCTC 1898
| || ||||||||||| |||| ||||||||||||||||||||||
Sbjct 1931 A-GCCTGCTTTTGGCAATAGCCTAACATACAAATTGTGGTCTCTC 1974
> AT2G03280.2 | Symbols: | O-fucosyltransferase family protein
| chr2:996088-998295 REVERSE LENGTH=1744
Length=1744
Score = 950 bits (514), Expect = 0.0
Identities = 875/1045 (84%), Gaps = 41/1045 (4%)
Strand=Plus/Plus
Query 560 TTTGAGGATATTTTTGATGTGACA-CATTTCATTGATTCATTGAGAGATGAAGTTCGGAT 618
|||||||| ||||||||| | | | |||||||||||||| || |||||||||||| ||||
Sbjct 549 TTTGAGGACATTTTTGATAT-AAAGCATTTCATTGATTCGTTAAGAGATGAAGTTAGGAT 607
Query 619 TTTAAGGAAACTTCCAAAACGGTTTA-CAAGGAAGTATGGATATCAAA-TGTTCGAAATG 676
|||||| |||||| ||||||| || || ||||||||||| ||||| |||||||||||
Sbjct 608 CATAAGGAGACTTCCTAAACGGTATAGTAA-GAAGTATGGAT-TCAAATTGTTCGAAATG 665
Query 677 CCTCCTGTGAGCTGGTCTGATGAAAAATATTACTTG-AAGCAGATATTGCCTC-TTTTCA 734
|| |||||||||||||| | || |||||||||||| || ||| ||||||| | ||| |
Sbjct 666 CCGCCTGTGAGCTGGTCCAACGACAAATATTACTTGCAA-CAGGTATTGCCGCGGTTT-A 723
Query 735 GCAAACATAAAGTTATACACTTCAATAGGACTGATACCCGCCTGGCAAACAATGGTCTTC 794
| |||| |||||||||||| ||| | ||| |||||| || |||| ||||||||||||
Sbjct 724 GTAAACGTAAAGTTATACATTTCGTTCGGAGTGATACGCGATTGGCGAACAATGGTCTTT 783
Query 795 CGCTCGCA-CTCCAGTGGCTCAGGTGCCGGGTGAACTTT-CAGGGACTAAAG-TTCACTC 851
| || | | || || |||| || ||||| ||||| ||| || ||||| || |||||||
Sbjct 784 CTCTTG-ACCTTCAAAGGCTGAGATGCCGAGTGAA-TTTCCAAGGACT-GAGATTCACTC 840
Query 852 CACAGCTTGAGGCTTTGGGAGCTAAGTTAGTTCGGATTCTACAACAAAGAGGGCCATTTG 911
||| | |||||||||||||| | ||||||||||||||||| |||||||||||| | ||||
Sbjct 841 CACGGATTGAGGCTTTGGGATCAAAGTTAGTTCGGATTCTTCAACAAAGAGGGTCTTTTG 900
Query 912 TGGTTTTGCATCTGAGATATGAGATGGACATGTTAGCTTTCTCTGGCTGCACTCATGGTT 971
||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 901 TGGCTTTGCATTTGAGATATGAGATGGACATGTTGGCTTTCTCTGGTTGCACTCATGGTT 960
Query 972 GCACTGAGGAAGAAGCTGAAGAGCTAAAAAAGATGAGGTACACATATCCCTGGTGGAGAG 1031
| || || |||||||||||||| || |||||||||||||| ||||||| ||||||||||
Sbjct 961 GTACCGATGAAGAAGCTGAAGAACTCAAAAAGATGAGGTATGCATATCCATGGTGGAGAG 1020
Query 1032 AGAAGGAGATAGTCTCAGAGGAGAGGAGAGCGCAAGGGCTGTGTCCTTTGACGCCAGAGG 1091
|||| |||||||| ||||| || ||||||| |||||| |||||||||||||| || ||||
Sbjct 1021 AGAAAGAGATAGTTTCAGAAGAAAGGAGAGTGCAAGGACTGTGTCCTTTGACACCGGAGG 1080
Query 1092 AGGTGGCCTTGGTT-TTAAAAGCATT-GGGATTCGAGAAA-AATACACAGATATACATTG 1148
||| || |||||| || |||||||| ||| ||| | ||| ||||||||||||||||||
Sbjct 1081 AGGCGGTTTTGGTTCTT-AAAGCATTGGGGTTTC-A-AAAGGATACACAGATATACATTG 1137
Query 1149 CAGCTGGTGAGATTTATGG-GG-GCGAGCATAGACTATCAGTTTTAA-GGAAAGCATTCC 1205
||||||||||||||| ||| || || | | ||| || | || ||| |||| |||| |
Sbjct 1138 CAGCTGGTGAGATTTTTGGTGGTGCAA--AGAGATTAGCCCTTCTAAAGGAAT-CATTTC 1194
Query 1206 CGA-GAATTGT-AAAGAAGGAAATGCTATTGGAGTC-AACGGAGCTACAACAGTTTCAGA 1262
| | ||||||| ||| |||||||||||||| || || ||| || | |||||||||||||
Sbjct 1195 C-ACGAATTGTGAAA-AAGGAAATGCTATTAGA-TCCAACAGAATTGCAACAGTTTCAGA 1251
Query 1263 ACCATTCGTCTCAAATGGCTGCTCTAGATTTCATGGTATCTGTGGCCAGCAACACATTTA 1322
||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||
Sbjct 1252 ACCATTCATCTCAAATGGCAGCTCTAGATTTCATAGTATCTGTAGCCAGCAACACTTTTA 1311
Query 1323 TTCCTACGTATGATGGAAACATGGCAAAAGTCGTGGAAGGTCATCGGAGATACCTTGGGT 1382
||||||| ||| ||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1312 TTCCTACCTATTATGGAAACATGGCAAAAGTTGTCGAAGGTCATCGGAGGTACCTTGGGT 1371
Query 1383 ATAAGAAGACAATCCTGCTTGACCGTAAGAGACTCGTGGAGCTACTAGACTTACATCACA 1442
|||||| |||||| |||| ||||| |||||||| |||||||| ||||||| ||| |||
Sbjct 1372 TTAAGAAAACAATCTTGCTAGACCGGAAGAGACTTGTGGAGCTTTTAGACTTGCATAACA 1431
Query 1443 ACAAGACCCTCACGTGGGATCAGTTTGCAGTAGCCGTCAAGGAAGCCCATGAGAG-ACGA 1501
|||| || ||| | |||||||||||||||||||| |||||||| |||||| | || ||||
Sbjct 1432 ACAAAACGCTCTCTTGGGATCAGTTTGCAGTAGCTGTCAAGGATGCCCATCA-AGGACGA 1490
Query 1502 -GCA-GG-AGCACCTACACATCG-AAGAGTAATCTCTGACAAACCTAAGGAGGAAGATTA 1557
| | || || ||| |||||||| || ||| ||||| | | ||| ||||| ||||||||
Sbjct 1491 CGAATGGGAGAACCAACACATCGGAA-AGTTATCTCCGTTAGACCGAAGGAAGAAGATTA 1549
Query 1558 CTTCTACGCAAACCCTCAAGAATGT 1582
|||||| || || ||||||||||||
Sbjct 1550 CTTCTATGCCAATCCTCAAGAATGT 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93975420240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5