BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471564
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14030.1 | Symbols: | Rubisco methyltransferase family prot... 2712 0.0
AT1G14020.1 | Symbols: | O-fucosyltransferase family protein |... 84.2 4e-15
> AT1G14030.1 | Symbols: | Rubisco methyltransferase family protein
| chr1:4805306-4807517 REVERSE LENGTH=1713
Length=1713
Score = 2712 bits (1468), Expect = 0.0
Identities = 1601/1665 (96%), Gaps = 9/1665 (1%)
Strand=Plus/Plus
Query 1 ACACACTCTGTTTCACCGATACTACCCGCCAACGGAAAACCACCATGACAGCCTCCGTCG 60
|||| ||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 34 ACACTCTCTGTTTCACTGATACTACCCGCCATCGGAAAACCACCATGTCAGCCTCCGTCG 93
Query 61 CCGTCGTGTCGGGTTTTCTCCGTGTTCCGTCAATTCAAAAGTCACGAAACTCTTCCATTC 120
||||||||||||||||||||||| | ||||||||||||||||| | |||| ||||| |||
Sbjct 94 CCGTCGTGTCGGGTTTTCTCCGTATCCCGTCAATTCAAAAGTCTCAAAACCCTTCCTTTC 153
Query 121 TCTTTTCTCGACCCAAGAAATCTTTGGTGAGACCTATTTCAGCTTTAAGCTCAGAACTGC 180
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||
Sbjct 154 TCTTTTCTCGACCCAAGAAATCTTTGGTGAGACCCATTTCAGCTTCAAGCTCAGAGTTGC 213
Query 181 CGGAAAATGTTCGGAATTTCTGGAAATGGCTCGGAGACCAAGGAGTCGTCTCCGGGAAGT 240
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 214 CGGAAAATGTTCGGAATTTCTGGAAATGGCTCAGAGACCAAGGAGTCGTATCCGGGAAGT 273
Query 241 CTCCGGCAGAACCTGCCGTGGTACCGGAAGGTTTGGGACTTGTAGCCAGGCGTGATATTG 300
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 CTGTGGCAGAACCTGCGGTGGTACCGGAAGGTTTGGGACTTGTAGCCAGGCGTGATATTG 333
Query 301 GAAGAAACGAGGTCGTATTGGAGATTCCTAAGCGATTGTGGATAAACCCAGAGACAGTGA 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 334 GAAGAAACGAGGTCGTATTGGAGATTCCCAAGCGATTGTGGATAAACCCAGAGACAGTGA 393
Query 361 CTGCTTCCAAGATCGGACCTTTATGCGGCGGATTAAAGCCGTGGGTTTCAGTAGCTCTGT 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CTGCTTCCAAGATTGGACCTTTATGCGGCGGATTAAAGCCGTGGGTTTCAGTAGCTCTGT 453
Query 421 TTTTGATCAGAGAGAAGTATGAAGAAGAGTCTTCATGGAGAGTTTATCTTGATATGCTTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TTTTGATCAGAGAGAAGTATGAAGAAGAGTCTTCATGGAGAGTTTATCTTGATATGCTTC 513
Query 481 CTCAATCTACTGATTCTACTGTCTTCTGGTCAGAAGAGGAGCTTGCTGAGCTTAAAGGGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 CTCAATCTACTGATTCTACTGTCTTCTGGTCAGAAGAGGAGCTTGCTGAGCTTAAAGGGA 573
Query 541 CTCAACTGTTGAGCACCACATTGGGTGTGAAAGAGTATGTGGAGAATGAATTCTTGAAAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 CTCAACTGTTGAGCACCACATTGGGTGTGAAAGAGTATGTGGAGAATGAATTCTTGAAAC 633
Query 601 TGGAACAAGAGATATTACTGCCCAACAAAGATCTCTTCTCATCCCGCATAACACTCGATG 660
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 634 TGGAACAAGAGATATTACTGCCTAACAAAGATCTCTTCTCATCCCGCATAACACTTGATG 693
Query 661 ACTTCATCTGGGCGTTTGGGATTCTCAAGTCGAGGGCTTTTTCTCGTCTCCGTGGCCAAA 720
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 694 ACTTCATATGGGCGTTTGGGATCCTCAAGTCGAGGGCTTTTTCTCGTCTCCGTGGCCAAA 753
Query 721 ACCTTGTCTTGATCCCTCTTGCAGACTTGATAAACCATAACCCCGCAATAACGACAGAAG 780
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 754 ACCTTGTCTTGATCCCTCTTGCAGACTTGATAAACCATAACCCCGCGATAAAGACAGAAG 813
Query 781 ATTACGCATACGAGATTAAAGGAGCCGGCCTTTTCTCTAGAGATCTCTTATTTTCCTTGA 840
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 ATTATGCATACGAGATCAAAGGAGCCGGCCTTTTCTCTAGAGATCTCTTATTTTCCTTGA 873
Query 841 AGTCACCTGTTTATGTTAAAGCAGGTGAGCAGGTATACATTCAGTACGATCTGAACAAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 AGTCACCTGTTTATGTTAAAGCAGGTGAGCAGGTATACATTCAGTACGATCTGAACAAAA 933
Query 901 GCAATGCAGAACTTGCTCTCGACTATGGTTTTGTGGAATCAAACCCTAACCGGAACTCAT 960
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 934 GCAATGCAGAACTTGCTCTCGACTATGGTTTTGTGGAATCAAACCCTAAACGGAACTCAT 993
Query 961 ATACTTTAACAATAGAGATACCAGAATCAGACCCATTCTTTGGGGATAAGTTGGATATTG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 ATACTTTAACAATAGAGATACCAGAATCAGACCCATTCTTTGGGGATAAGTTGGATATTG 1053
Query 1021 CTGAGACTAACAAGATGGGTGAGACCGGATACTTTGACATAGTAGACGGCCAGACTCTTC 1080
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 CTGAGAGTAACAAGATGGGTGAGACCGGATACTTTGACATAGTAGACGGCCAGACTCTTC 1113
Query 1081 CTGCTGGCATGCTTCAGTATCTTCGGCTTGTGGCTCTTGGCGGTTCAGATGCTTTCTTAT 1140
| ||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1114 CCGCTGGTATGCTTCAGTACCTTCGGCTTGTGGCTCTTGGCGGTCCAGATGCTTTCTTAT 1173
Query 1141 TAGAGTCTATCTTCAATAACACCATATGGGGCCATCTTGAATTGCCTGTAAGTCGTTCAA 1200
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1174 TAGAATCTATCTTCAATAACACCATATGGGGTCATCTTGAATTGCCTGTAAGTCGTACAA 1233
Query 1201 ACGAGGAACTTATATGCCGTGTTGTCAGAGATGCCTGCAAATCTGCTCTGTCTGGTTTT- 1259
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 ACGAGGAACTCATATGCCGTGTTGTCAGAGATGCCTGCAAATCTGCTCTGTCTGGTTTTG 1293
Query 1260 AGTACCACCATTGAAGAGGATGAGAAGCTTCTGGA-AGAAGGGAAGCTTGATCCTAGGTT 1318
| ||| ||||||||||||||||||||||||||||| | |||| |||||||| ||||||||
Sbjct 1294 A-TACGACCATTGAAGAGGATGAGAAGCTTCTGGACA-AAGGAAAGCTTGAGCCTAGGTT 1351
Query 1319 GGAAATGGCTCTCAAAATAAGGATTGGTGAGAAGAGAGTACTTCAGCAAATCGACCAAAT 1378
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1352 GGAAATGGCTCTCAAGATAAGGATTGGTGAGAAGAGAGTGCTTCAGCAAATCGACCAAAT 1411
Query 1379 CTTCAAGGATAGAGAGCTTGAGCTTGACGTTTTAGAGTATTACCAAGAGAGAAGGCTCAA 1438
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1412 CTTCAAGGATAGAGAGCTTGAACTTGACATTTTAGAGTATTACCAAGAGAGAAGGCTCAA 1471
Query 1439 AGATCTTGGTTTGGTTGGCGAACAAGGGGATATCATCTTCTGGGAAACCAAGTGAGAATT 1498
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1472 AGATCTTGGGTTGGTTGGCGAACAAGGGGATATTATCTTCTGGGAAACCAAGTGAGAATT 1531
Query 1499 AGCTTAGCTCAGCTCGTATAGCTTATCCTGCAGAACAAAATCAGGGCTTGAAAGAAAATC 1558
||||||||| | |||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 1532 AGCTTAGCT----T-GTATAGCTTATCCTGCAGAACAAACTCAAGGCTAGAAAGAAAATC 1586
Query 1559 TTTACTGGTTTGGTCTCAGACCACATAGAGTTGAATCAACCTCGAGACATAAGAGTTGAG 1618
||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 1587 TTTACTGGTTTGGTCTCAGACCACATAGACTTGAATCAACCTCAAGACATCAGAGTTGAG 1646
Query 1619 AGACCACAATTTGTATGTTAGGCTATTGCCAAAAGCTGGCTTTTT 1663
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1647 AGACCACAATTTGTATGTTAGGCTATTGCCAAAAGCAGGCTTTTT 1691
> AT1G14020.1 | Symbols: | O-fucosyltransferase family protein
| chr1:4802720-4805375 FORWARD LENGTH=1974
Length=1974
Score = 84.2 bits (45), Expect = 4e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 1616 GAGAGACCACAATTTGTATGTTAGGCTATTGCCAAAAGCTGGCTTTTT 1663
||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1974 GAGAGACCACAATTTGTATGTTAGGCTATTGCCAAAAGCAGGCTTTTT 1927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82178292165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5