BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471574
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14150.1 | Symbols: PQL1, PQL2 | PsbQ-like 2 | chr1:4839853-... 941 0.0
> AT1G14150.1 | Symbols: PQL1, PQL2 | PsbQ-like 2 | chr1:4839853-4840751
FORWARD LENGTH=724
Length=724
Score = 941 bits (509), Expect = 0.0
Identities = 635/693 (92%), Gaps = 19/693 (3%)
Strand=Plus/Plus
Query 1 ATGAGCTCCTTCA--A-CACCAACACTCCACCACCGTATCTCCTCCGCCCAAA-TTACCA 56
||||||||||||| | |||||||||||| ||||||||||||||||| ||| ||| ||
Sbjct 33 ATGAGCTCCTTCACCACCACCAACACTCCGCCACCGTATCTCCTCCG-GAAAATTTATCA 91
Query 57 CCGCCGTGTAAACTC-ACCTTTCTCCGTCGTATGCTGCACCGGAGAATCCCAACAAGACA 115
|||||||||||| | ||| |||||||||||||| |||||||||||| ||||||||||||
Sbjct 92 TCGCCGTGTAAAC-CAACCGTTCTCCGTCGTATGTTGCACCGGAGAACCCCAACAAGACA 150
Query 116 TCTTCACTCGCAGGAGAACCCTGACCTCACTTATAACA-TCGACGGTCATCGGCGGTGCC 174
||||||| ||| |||||||| |||| ||||| |||||| || |||||||||||||||||
Sbjct 151 TCTTCACCCGCCGGAGAACCTTGACTTCACTAATAACATTC-ACGGTCATCGGCGGTGCT 209
Query 175 ACGTCATCAGCATTAGCTCAGGAGAAATGGGGGACAAGGTCATTCATAAAGGAGAAATAT 234
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 ACGTCATCAGCATTAGCACAGGAGAAATGGGGGACAAGGTCATTCATAAAGGAGAAATAT 269
Query 235 TTTATGCCGGGGCTATCGCCGGAGGATGCGGCGGCGCGTATAAAACAGACGGCAGAAGGA 294
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 270 TTTATGCCGGGACTATCACCTGAGGATGCGGCGGCGCGTATAAAACAGACGGCTGAAGGA 329
Query 295 TTAAGAGACATGAGGGAGATGTTGGAGCACATGTCGTGGAGGTACGTTATATTCTACATA 354
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 330 TTAAGAGACATGAGGGAGATGTTGGACCACATGTCGTGGAGGTACGTTATATTCTACATA 389
Query 355 AGATTGAAACAGGCTTATCTGTCTCAGGATCTCACCAACGCCATGAACATCTTGCCGGAG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 AGATTGAAACAGGCTTATCTGTCTCAGGATCTCACCAACGCCATGAACATCTTGCCGGAG 449
Query 415 AATCGCCGGAATGATTACGTTCAGGCGGCAAACGAGCTAGTCGAAAACATGAGTGAGTTG 474
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 450 AGTCGCCGGAATGATTACGTTCAGGCGGCAAACGAGCTTGTCGAAAACATGAGTGAGTTG 509
Query 475 GATTACTACGTACGGACGCCAAAGGTGTACGAGTCCTATCTCTACTACGAGAAGACATTG 534
|||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 510 GATTTCTATGTACGGACGCCAAAGGTGTACGAGTCCTATCTTTACTACGAGAAGACATTG 569
Query 535 AAATCGATAGACAATGTGGTGGAGCTTCTTGCTTAATTCAAATGTATTAATGTATATATC 594
||||||||||||||||| |||||| ||||||||||||||| |||||| | ||||| ||
Sbjct 570 AAATCGATAGACAATGTTGTGGAGTTTCTTGCTTAATTCAGTTGTATTG-TATATATGTC 628
Query 595 TTTCTTCATTCTTCACATGAAATTTCTGGACTCATTACATTACACTAGATA-T-AAAA-- 650
||||||||||||||||||||||| ||||||||| |||||||| | || | | | ||||
Sbjct 629 TTTCTTCATTCTTCACATGAAATCTCTGGACTCGTTACATTAGA-TATAAAATTAAAAGA 687
Query 651 -TTAAAAAAG-ACTTATTCAAGAAACATTTCGT 681
|||| || | | | ||||||||||||||||||
Sbjct 688 CTTAATAATGTA-T-ATTCAAGAAACATTTCGT 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5