BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471578
Length=1706
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14170.3 | Symbols: | RNA-binding KH domain-containing prot... 2636 0.0
AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding | ch... 357 2e-97
> AT1G14170.3 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843234-4845847 REVERSE LENGTH=1852
Length=1852
Score = 2636 bits (1427), Expect = 0.0
Identities = 1625/1719 (95%), Gaps = 19/1719 (1%)
Strand=Plus/Plus
Query 1 TATTTAATATATAGACGTTAGCCCC-AAAAC-TTGTATTTCTCTGCTTTCAAACCCAAAA 58
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 1 TATTTAATATATAGACGTTAGCCCCAAAAACTTTGTATTTCTCTGCTTTCAAACCCAAGA 60
Query 59 AGCCaaaaaaaaaaaCCATTG-A---AGCAGCAGCCGAAGAAGCGGTCACATTTTCCGGC 114
|||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 61 AGCC--AAAATAAAACCATTGAAGCTAGCAGCAGCCGAAGAAGCGGTCACATTTTCCGGC 118
Query 115 TAAACGGACAGATCGACCAGTGAAAGCTCCCATCACTTCCTGCA-GCATTGTGATTGTTT 173
|||| |||||||||||||||||||||||| ||| ||||||| | ||||||||| | |
Sbjct 119 AAAACAGACAGATCGACCAGTGAAAGCTCCTATCTCTTCCTG-AGGCATTGTGA---TCT 174
Query 174 CTTGTTAAAATGGCTAGTACTCTGAGGAACGTTCATGGTAAGAGATCTAATTTCCAATCT 233
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 175 CTTGTTAAAATGGCTAGTACTCTGAGGAACATTCATGGTAAGAGATCTAATTTGCAATCT 234
Query 234 GAGTTTACTGGAAATGGAGGAAGTAAGAGAAGAAATCTTCATGATGATACAGATCAAAAT 293
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 235 GAGTTTACTGGAAATGGAGGAAGTAAGAGAAGAAATCTTCATGATGAAACAGATCAAAAT 294
Query 294 GTTATTGGGTCAGAAGAAACTGTGTACCGCTACTTGTGCCCCGTGAAAAAGACCGGGAGC 353
||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 295 GTTATTGCTTCAGAAGACACTGTATACCGCTACTTGTGTCCCGTGAAAAAGACCGGGAGC 354
Query 354 ATTATCGGGAAGGGTGGCGAGATCGCTAAGCAGATAAGGTCTGATACAAAATCAAACATG 413
||||||||||| || |||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 355 ATTATCGGGAAAGGCGGCGAGATTGCTAAGCAGATAAGGTCTGAGACTAAATCAAACATG 414
Query 414 AGGATAAACGAGGCTTTACCCGGTTGTGAAGAGCGTGTTGTTACCATATATTCCACTAAT 473
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 415 AGGATAAACGAGGCTTTACCTGGTTGTGAGGAGCGTGTTGTTACCATGTATTCCACTAAT 474
Query 474 GAGGAGTTGAATCATTTTGGAGATGATGGTGAGCTTGTTTGTCCTGCTTTAGATGCTCTT 533
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 475 GAGGAGTTGAATCATTTTGGAGATGATGGTGAGCTTGTTTGTCCTGCTTTGGATGCTCTT 534
Query 534 TTCAAGGTTCATGACATGGTTGTAGCGGACACtgatcatgatgatggta---atgatgat 590
|||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||
Sbjct 535 TTCAAGGTTCATGACATGGTTGTAGCGGACGCTGATCAAGATGATGGTACTGATGATGAT 594
Query 591 gatgatCTTGGTGAAAAACAAACGGTTACTGTTAGGATGCTCGTACCGTCTGACCAAATT 650
|||||||||||||||| |||||||| || || |||||||| ||||||||||||||||||
Sbjct 595 AATGATCTTGGTGAAAAGCAAACGGTAACCGTGAGGATGCTTGTACCGTCTGACCAAATT 654
Query 651 GGTTGCGTTATCGGGAAAGGAGGGCAAGTCATCCAGAATCTGCGTAATGAAACCAATGCT 710
||||||||||| ||||||||||| ||||| ||||||||||| ||||| || |||||||||
Sbjct 655 GGTTGCGTTATTGGGAAAGGAGGTCAAGTAATCCAGAATCTTCGTAACGACACCAATGCT 714
Query 711 CAGATTCGTGTCATCAAAGATCATCTACCTTCTTGTGCTTTGACTTTGAGTCATGATGAG 770
||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 715 CAGATTCGTGTTATCAAAGATCATCTTCCTGCTTGTGCTTTGACTTTGAGTCATGATGAG 774
Query 771 CTTCTTCAGATAATTGGAGAACCTTTGGTTGTTAGAGAAGCTCTTTATCAAGTAGCTTCC 830
||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 775 CTTCTTCTGATAATTGGAGAGCCTTTGGTTGTTAGAGAAGCTCTTTATCAAGTTGCTTCA 834
Query 831 CTGCTTCATGATAATCCGTCACGATTTCAACACTTACTCCTGTCTTCTTCAAGTTC-T-- 887
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 835 CTGCTTCATGATAATCCTTCAAGATTTCAACACTTACTCCTGTCTTCTTCAAGTTCTTCC 894
Query 888 ATGCATCAACCTGGTGCAATGTTAATGTCTGCAGCGCTAACGAGCTCTCACAGAAACTAC 947
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 895 ATGCATCAACCTGGTGCAATGTTAATGTCTGCAGCACTGACGAGCTCTCACAGAAACTAC 954
Query 948 GCTGTGCGTAGAGATATAGCAGATGCAAGGGAGTTTTGTGTTTGCTTCATCTGTCCAGCT 1007
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 955 GCTGTGCGTAGAGATATAGCAGATGCAAGAGAATTTTGTGTTTGCTTCATCTGTCCAGCT 1014
Query 1008 GAAAACGTTGGAGGTGTAATTGGAAAAGGTGGTGGTTTCATTAATCAGATCAGGCAAGAA 1067
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1015 GAAAACGTTGGAGGTGTGATTGGAAAAGGCGGTGGTTTCATTAATCAGATCAGGCAAGAA 1074
Query 1068 ACTGGTGCTACGATTAGAGTCAATACCTCAGAAACTGATGAAGATGATTGCATAATTTTC 1127
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1075 ACTGGTGCTACTATTAGAGTCAATACCTCAGAAACTGATGATGATGATTGCATCATTTTC 1134
Query 1128 ATATCATCAAAAGAGTTCTATGAAGATCAATCTCCAGCGGTGAATGCAGCAATACGCTTA 1187
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ATATCATCAAAAGAGTTCTACGAAGATCAATCTCCAGCGGTGAATGCAGCAATACGCTTA 1194
Query 1188 CAACAGCGATGCAGTGAGAAAGTGGGTAAAGATGCAAATGATTTAGCATTCTCTACGCGT 1247
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1195 CAACAGCGATGCAGTGAGAAAGTTGGTAAAGATGCAAATGATTTAGCAATCTCTACGCGT 1254
Query 1248 TTACTTGTATCGAGTTCCCAAATCGGGTGTCTCATTGGAAAAGGTGGAGCGGTTATATCC 1307
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1255 TTACTTGTATCGAGTTCCCAAATCGGGTGTCTCATTGGAAAAGGTGGAGCAGTTATATCT 1314
Query 1308 GAGATGCGGAGTGTAACAAGAGCAAATATCCGTATTCTTCAAAAAGAAGATGTACCAAAA 1367
|||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1315 GAGATGAGGAGTGTAACAAGAGCTAATATTCGTATTCTTCAAAAAGAAGATGTACCAAAA 1374
Query 1368 ATTGCACGTGAAGATGAAGAGATGGTTCAGATTACAGGAAATCCTGATGCCGCTATGAAA 1427
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1375 ATTGCTCGTGAAGATGAAGAGATGGTTCAGATTACAGGAAGTCCTGATGCCGCTATGAAA 1434
Query 1428 GCTCTTACGCAAGTAATCTTGCGATTAAGAGCTAACTCTTTCGACATGGATCATGGACTT 1487
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GCTCTCACGCAAGTAATCTTGCGATTAAGAGCTAACTCTTTCGACATGGATCATGGACTT 1494
Query 1488 GTCTTGCTACCAACATCTTTTCCATATATCCCTCAACTGACCGAAAGTTCGAGCAAATCC 1547
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1495 GTCTTGCTACCAACATCTTTTCCATATATCCCTCAAGTGACTGAAAGTTCGAGCAAATCC 1554
Query 1548 AAATACGCAAAACGCGATGATCACAGCAAACTGAATTCGAATTCTAAGAGAAGAAACTAT 1607
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||
Sbjct 1555 AAATACGCAAAACGCGATGACCACAGTAAACTGAATTCGAATTCTAAGAGAAGAAACCAT 1614
Query 1608 GTTTCTTAAATCAAGAAAACCAATCTTAGAGAGGAAGATTGAGAGTGTTCAGAACTTCAA 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 GTTTCTTAAATCAAGAAAACCAATCTTAGAGAGGAAGATTGAGAGTGTTCAGAACTTCAA 1674
Query 1668 TGTTGATGCAATTTTTATACAAAATGATGTTACTTATAG 1706
|||||||||||||||||||||| || ||||||||| |||
Sbjct 1675 TGTTGATGCAATTTTTATACAATATTATGTTACTTGTAG 1713
> AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding |
chr2:935336-936639 FORWARD LENGTH=1030
Length=1030
Score = 357 bits (193), Expect = 2e-97
Identities = 471/599 (79%), Gaps = 44/599 (7%)
Strand=Plus/Plus
Query 313 CTGTGTACCGCTACTTGTGCCCCGTGAAAAAGA-CCGGGAGCATTATCGGGAAG-GGTGG 370
||||||| || |||||||| | ||| | |||| | ||||| || | ||| || |||||
Sbjct 1 CTGTGTATCGTTACTTGTGTCTTGTG-AGAAGAGCAGGGAG--TTCTTGGG-AGAGGTGG 56
Query 371 CGAGATCGCTAAGCAGATAAGGTCTGATACAAAATCAAACATGAGGATAAACGAGGCTTT 430
||||| || || |||| |||||||| || ||| ||||||||||| |||||||||| ||
Sbjct 57 TGAGATTGCAAAATAGATTAGGTCTGAGACTAAAGCAAACATGAGGGTAAACGAGGCATT 116
Query 431 ACCCGGTTGTGAAGAGCGTGTTGTTACCATATATTCCACTAATGAGGAGTTG-AATCATT 489
|| |||||||| ||||||||||| || |||||||| | || |||||| | |||| |
Sbjct 117 GCCTGGTTGTGATGAGCGTGTTGTGACTATATATTCTAATAGCGAGGAG-AGAAATCGTA 175
Query 490 TTGGAGATG---ATG-GTGAGCTTGTTTGTCCTGCTTTAGATGCTCTTTTCAAGGTTCAT 545
||| ||||| ||| | || |||| ||||||||||| |||||||||||||||||||||
Sbjct 176 TTGAAGATGACAATGAG-GATTTTGTCTGTCCTGCTTTTGATGCTCTTTTCAAGGTTCAT 234
Query 546 GACATGGTTGTAG-CG--G-A---CACtgatcatgatgatggtaatgatgatgatgatCT 598
|| |||||||| | | | | || ||| |||||||| |||||| ||||||| |
Sbjct 235 GATATGGTTGTTGTTGAAGAATTTGAC-GATGATGATGATTATAATGACAATGATGA-GT 292
Query 599 -TGGTGAAAAACAAAC-G--GTTACTGTTAGGATGCTCGTACCGTCTGACCAAATTGGTT 654
| |||| |||||| | |||||||| |||||||| || || ||||| ||||||||||
Sbjct 293 ATAGTGAGGGACAAACAGTTGTTACTGTGAGGATGCTTGTGCCTTCTGATCAAATTGGTT 352
Query 655 -GCGTTATCGGGAAAGGAGG-GCAAGTCATCCAGAA-TCTGCGTAATGAAACCAATGCTC 711
| |||| || ||||| || ||| | || || || ||||||||||| || |||||||
Sbjct 353 ATC-TTATTGGCAAAGGTGGACCAA-TTATTCA-AACGCTGCGTAATGACACTAATGCTC 409
Query 712 AGATTCGTGTCATCAAA-GATCATCTA-CCTTCTTGTGCTTTGACTTTGAGTCATGATGA 769
|||||||||| | ||| ||| ||||| || | ||||||||| | ||||||||||||||
Sbjct 410 AGATTCGTGTTA-GAAATGATAATCTACCCAT-GTGTGCTTTGGCATTGAGTCATGATGA 467
Query 770 GCTTCTTCAGATAATTGGAGAACCTT-TGGTTGTTAGAGAAGCTCTTTATCAAGTAGC-T 827
||||||||||||||||||||| |||| || | ||||||||||||||||| ||||| || |
Sbjct 468 GCTTCTTCAGATAATTGGAGATCCTTCTGCT-GTTAGAGAAGCTCTTTACCAAGTTGCCT 526
Query 828 TCCCTGCTTCATGATAATCCGTCACGATTTCA-ACACTTACTC-CTGTCTTCTTCAAGT 884
| | ||||| || ||||||||||||||||| | | ||| ||| |||||||| || |||
Sbjct 527 TTC-TGCTTTATAATAATCCGTCACGATTTTAGA-ACT-ACTTTCTGTCTTCCTCTAGT 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84336915600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5