BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471582

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14205.1 | Symbols:  | Ribosomal L18p/L5e family protein | c...   529    2e-149


> AT1G14205.1 | Symbols:  | Ribosomal L18p/L5e family protein | 
chr1:4855533-4856930 FORWARD LENGTH=575
Length=575

 Score =  529 bits (286),  Expect = 2e-149
 Identities = 326/345 (94%), Gaps = 3/345 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTGCTTTGAGTTCTCTCTCTTTTGTTCAGTTTAGAGTCTCTGACATTCTCGGAACT  60
            ||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||||||
Sbjct  50   ATGGCTGCTTTGACTTCTCTTTCTACTGTTCAGTTTAGAGTCTCTGACATTCTCGGAACT  109

Query  61   CGTCTGAAACCTTATCCCCAATTTCCAATTCGAATAACAAATATGTCTGT-G--AAGCCG  117
            ||| |||||||||||||||| ||||||||||||||||||| ||||||||| |  ||||||
Sbjct  110  CGTTTGAAACCTTATCCCCAGTTTCCAATTCGAATAACAACTATGTCTGTAGTAAAGCCG  169

Query  118  TTTGTGATTGAAGCAAGAGGGAATTCTCGAGTCGAGAGTCCGAAAACCAGGAACAGGAGG  177
            |||||||||||||| ||||||||  ||||||| |||||||||||||| ||||||||||||
Sbjct  170  TTTGTGATTGAAGCGAGAGGGAACACTCGAGTGGAGAGTCCGAAAACTAGGAACAGGAGG  229

Query  178  AGCAGGAAGAAGTTTAATGGAACACAAACAAAACCAAGACTTTCAGTGTTCTGTTCAGAT  237
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  230  AGCAGGAAGAAGTTTACTGGAACACAAACAAAACCAAGACTTTCAGTGTTCTGTTCAGAT  289

Query  238  AAACAACTCTATGCTATGTTGGTGGATGACTTCAACAAAAAGTGTTTGTTCTACGCTAGT  297
            ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  290  AAACAACTCTATGCTATGTTGGTTGATGACTTTAACAAAAAGTGTTTGTTCTACGCTAGT  349

Query  298  ACATTGCAGAAGTCCATTCGTGGAGATCCTCCATGTACTGTCATT  342
            |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  350  ACATTGCAGAAGTCCATTCGCGGAGATCCTCCATGTACTGTCATT  394


 Score =  255 bits (138),  Expect = 3e-67
 Identities = 149/154 (97%), Gaps = 2/154 (1%)
 Strand=Plus/Plus

Query  514  GAAGCAGCAAAACGGGTTGGAGAAGAGCTCATTAAGGCTTCTGTTGACCTCAAGATTAAC  573
            |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  395  GAAGCAGCTAAACGGGTTGGAGAAGAGCTCATTAAGGCTTCTATTGACCTCAAGATTAAC  454

Query  574  GAGATATCAG-CTTATGATCGAAATGGAAATAAACAAGGCGAAAGAATGCAAGCCTTTGA  632
            |||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  455  GAGATATC-GTCTTATGATCGAAATGGAAATAAACGAGGCGAAAGAATGCAAGCCTTTGA  513

Query  633  AATTGCAATTGCGCAACACGGGTTCTTACCGTAG  666
            ||||||||||||||||||||||||||||||||||
Sbjct  514  AATTGCAATTGCGCAACACGGGTTCTTACCGTAG  547



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32200088227


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5