BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471583
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14210.1 | Symbols: | Ribonuclease T2 family protein | chr1... 1295 0.0
> AT1G14210.1 | Symbols: | Ribonuclease T2 family protein | chr1:4856778-4857964
REVERSE LENGTH=891
Length=891
Score = 1295 bits (701), Expect = 0.0
Identities = 817/872 (94%), Gaps = 11/872 (1%)
Strand=Plus/Plus
Query 1 AAAACACATGAGAGGAATCGTCATCGTAAACTTACTAATTTTACAGAGTCTTGTCGTGTC 60
||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||||
Sbjct 17 AAAACACATGAGAGGAATCATCATCGTAAGCTTGTTAATTTTACAGAGCCTTGTCGTGTC 76
Query 61 TTCGTCTCCAACAGCACCAGACTTCAATTTCTTCTACTGGGTCAACTACTGGCCAGGAGC 120
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TTCGTCTCAAACAGAACCAGACTTCAATTTCTTCTACTGGGTCAACTACTGGCCAGGAGC 136
Query 121 AATATGCGATAGCCAAAAAGGATGCTGTCCTCCAACGAAAGGCAACACGGCGCCCGATTT 180
|||||||||||||||||||||||| || |||||||||||||||||||| ||| | |||||
Sbjct 137 AATATGCGATAGCCAAAAAGGATGTTGCCCTCCAACGAAAGGCAACACAGCGTCGGATTT 196
Query 181 TATCATCCATGGACTCTGGCCTCAATTCAACAATGGAACTTGGCCTGCGTTTTGCGACCA 240
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 197 TATCATCCATGGACTCTGGCCTCAGTTCAACAATGGCACTTGGCCTGCGTTTTGCGACCA 256
Query 241 AACCAATCTCTTCGATATCTCCAAGATATCAGATCTAGTATGCCAAATGGAAAAGAAATG 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 257 AACCAATCTCTTCGATATCTCCAAGATATCAGATCTAGTCTGCCAAATGGAAAAGAAATG 316
Query 301 GACAGAGTGGGGAGTGTGGGCATGTCCAAGTAACGAGACAAATCTATGGGAGCACGAGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 317 GACAGAGTGGGGAGTGTGGGCATGTCCAAGTAACGAGACAAATCTATGGGAACACGAGTG 376
Query 361 GAACAAGCATGGCACATGTGTCCAATCTATCTTCGATCAACACTCTTACTTCCTTACCAA 420
||| ||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 377 GAATAAGCATGGCACCTGTGTCCAATCTATCTTCGACCAACACTCTTACTTCCGTACCAA 436
Query 421 TCTCAAATTCAAATACAAAGTCAATCTCCTCAACATCCTTAAACAAAAAGGAATCAAACC 480
||||||||||||| |||||||| |||||||||||||||||| ||||||||| || |||||
Sbjct 437 TCTCAAATTCAAACACAAAGTCCATCTCCTCAACATCCTTATACAAAAAGGTATTAAACC 496
Query 481 AAATGATGGATTTTACGGTTTGGATGAGATCAAGAATGCGATCAAATGCGTGATCGGATT 540
||||||||| |||||| ||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 497 AAATGATGGGTTTTACAGTTTGGACGAGATCAAAAATGCGATCAAATGCGCGATCGGATT 556
Query 541 TGCACCGGGTATCGAATGCAATGAAGATGTAAAGGGGAATAAGCAGCTTTTCCAGATCTA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 TGCACCGGGTATCGAATGCAATGAAGATGTAAAGGGGAATAAGCAGCTTTTCCAGATCTA 616
Query 601 TATATGTCTTGATAATTACGCAAAAGAGTTTGTGGAGTGCCCGTATGTTCCGGATAAATC 660
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 617 TATATGTCTTGATAATTACGCAAAAGAGTTTGTGGAATGCCCGTATGTTCCGGATAAATC 676
Query 661 ATGTGCTTCCAAGATCAAGTTTCCAAAGT-TTCCGGAGAGAGATTCTCTTAGTGAGTCCC 719
|||||||||||||||||||||||||| || |||| |||||||||||||||| |||||| |
Sbjct 677 ATGTGCTTCCAAGATCAAGTTTCCAA-GTCTTCCTGAGAGAGATTCTCTTAATGAGTCTC 735
Query 720 TAAGTGTGATAG-CCTCTGTTTCAACGACCTAGAAAACAAGAGTGTTT--GTGTTTCAAT 776
|||||||||| | ||||||||||||| ||||| |||| |||||| ||| ||||||||||
Sbjct 736 TAAGTGTGAT-GTCCTCTGTTTCAACTACCTAAAAAA-AAGAGTTTTTTTGTGTTTCAAT 793
Query 777 AAGAGAGTGCAGGTGAGAAGCTGCTATAAGTATGACGAAGGTGATGAGTCTTTGAGTTCT 836
|||||| ||||||||| | ||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 794 AAGAGAATGCAGGTGA-A-GCTTCTATAAGTTTGACGAATGTGATGAGTCTTTGAGTTCT 851
Query 837 ATATA-TATGATGAATGTAATGAGTCTTTGAG 867
||| | || |||||||| |||||||||||||
Sbjct 852 ATA-ACTAAAATGAATGTGATGAGTCTTTGAG 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5