BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471592
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14260.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1332 0.0
> AT1G14260.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:4872856-4874907 FORWARD LENGTH=1378
Length=1378
Score = 1332 bits (721), Expect = 0.0
Identities = 904/987 (92%), Gaps = 33/987 (3%)
Strand=Plus/Plus
Query 299 GAGTGTCGTATTTGTCAAGAGGAATGTGATATTAAGAATCTTGAGAGTCCATGTTCTTGC 358
|||||||| |||||||| || ||||||||||||||||||||||||||||| ||| |||||
Sbjct 373 GAGTGTCGGATTTGTCAGGATGAATGTGATATTAAGAATCTTGAGAGTCCTTGTGCTTGC 432
Query 359 AATGGCAGCTTAAAGTATGCTCACAGAAAATGTGTTCAACGTTGGTGCAATGAAAAGGGA 418
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 433 AATGGCAGCTTAAAGTATGCTCACAGAAAATGTGTTCAACGTTGGTGTAATGAAAAGGGA 492
Query 419 AACACTACATGCGAAATCTGTCATCAGCCATACCAAGCTGGATATACCTCACCACCACCT 478
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 493 AACACTATATGCGAAATCTGTCATCAGCCATACCAAGCTGGATATACCTCTCCACCACCA 552
Query 479 CCACCCCAATCAGAAGAAACTACTATTGACATTGGTGGAGGATGGAGAATCTCAGGTTTG 538
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 553 CCACCACAATCTGAAGAAACTACTATTGACATTGGTGGAGGATGGAGAATCTCGGGTTTG 612
Query 539 GATTTAGATGATCCACGTCTCTTGGCAATAGCAGAAGCCGAACGTCAGATTTTAGAATCG 598
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 613 GATTTAGATGATCCACGTCTCTTGGCAATAGCAGAAGCTGAACGTCAGATTTTAGAATCA 672
Query 599 GAGTATGATGATTATACAGCTTCAGATACCAATGGAGCTGCATTTTTCCGCTCAGCTGCT 658
|| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 673 GAATATGATGATTATACAGCTTCAGATACCAGTGGAGCTGCATTTTTCCGCTCTGCTGCT 732
Query 659 CTAATATTGATGACTCTTCTTCTATTGCGACATGCACTGACTATACCAGATTATGCAGAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 733 TTAATATTGATGACTCTTCTTCTATTGCGACATGCACTGACTATACCAGATTATTCAGAT 792
Query 719 GGTG-A-A-GATGACCCTTCTTCAATACTTTCTCTTTTCTTACTCCGAGCTGCCAGTTTT 775
||| | | ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AGTGAAGATGATGATCCTTCTTCAATACTTTCTCTTTTCTTACTCCGAGCTGCCAGTTTT 852
Query 776 CTTCTTCCTTGCTACATCATGGCATCAGCCATCAGTATCCTGCATCGCCGTAGACAAAGA 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 853 CTTCTTCCTTGCTACATCATGGCATCAGCCATCAGTATCCTGCATCGCCGTAGACAGAGA 912
Query 836 CAGGAAGCAGCGGCCTTAGCCACTCGGTTTGCGTTGGTGCTCAGCTCGCGGCAACCCAGA 895
||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 913 CAGGAAGCAGCGGACTTGGCCACTCGGTTTGCGTTGGTGCTCAGCTCGCGCCAACCTAGA 972
Query 896 GCCGTGATTAATTATTTGTCAATGGAGCCGTGATTT-A-A-T---A------G--T---A 938
|||||||||||||||||||||||||||| |||||| | | | | | | |
Sbjct 973 CCCGTGATTAATTATTTGTCAATGGAGCCATGATTTTATAGTTCCACTCTAAGAGTTTCA 1032
Query 939 --T--AT--GCTTTTCAA-TGATTTCATCAGCAAAT-GATTCATGAACTGCTGTTATAAG 990
| || ||||||||| | |||||||||| ||| ||||||||||||||||||| |||
Sbjct 1033 GGTGTATATGCTTTTCAAAT-ATTTCATCAGAAAAAAGATTCATGAACTGCTGTTAAAAG 1091
Query 991 AGTGGTTTGCAATTTGATATCAACAAGGACCATCAAAAGATCTACATGATGGTCCTTCTG 1050
|||||||| ||||||| || ||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1092 AGTGGTTTACAATTTGGTAGCAACAAGAACCATCACAAGATCTACATGATGGTCCTTCTG 1151
Query 1051 AATCGGCTTTCTTACAAACAAGGAATGTCCTAACTTAGTGCAGAGTTTTTTCTTATA-A- 1108
|||| ||||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct 1152 AATCAGCTTTCTTACAAACAAGGAGTGTCCTAACTTAGTGCAGAGTTTTTTTTTTTACAA 1211
Query 1109 GTATTCGATTCTAAGAAAGTTTGTGTATGTAGATTAAA-AGTTTCTGATTCTGTGGCATT 1167
||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||
Sbjct 1212 GTATTCGATTCTAAGAAAGATTGTGTATGTAGATTAAAGAGTTTCTGATTCTGTAGCATT 1271
Query 1168 AAGTTTTTCAATAACACTCGTTTGGGAGATGAGCATTTCACTTTTTTAAGaaaaaaaaaa 1227
||| |||||||||||||| | ||| ||||||||||||||||||||| | | ||| |||||
Sbjct 1272 AAGATTTTCAATAACACTTGATTGAGAGATGAGCATTTCACTTTTT-AGGTAAAGAAAAA 1330
Query 1228 CGAGACACATAATTTGTAACCTGTGTA 1254
||||||||||||||||||| |||||||
Sbjct 1331 CGAGACACATAATTTGTAATCTGTGTA 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61646269260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5