BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471595
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14270.1 | Symbols: | CAAX amino terminal protease family p... 1914 0.0
> AT1G14270.1 | Symbols: | CAAX amino terminal protease family
protein | chr1:4874875-4877248 REVERSE LENGTH=1339
Length=1339
Score = 1914 bits (1036), Expect = 0.0
Identities = 1195/1270 (94%), Gaps = 18/1270 (1%)
Strand=Plus/Plus
Query 30 TGTGTGGAAGTTCTCTAAGAAGAACAGAAAAATTCAAAATGGTTTCGCAGATAATTTCGT 89
||||||||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||
Sbjct 55 TGTGTGGAAGTTCTCTAAGAACAACAGAAAATTTCAAAATGGTTTCTCAGATAATCTCGT 114
Query 90 GTTTATCACAATCTCCGTCTCGTT-TATGTTTCTCCG-----A-GAGGCTAATT-TTGCC 141
||||||| |||||| |||||| || ||||||| |||| | |||| ||||| || ||
Sbjct 115 GTTTATCTCAATCTTCGTCTC-TTCTATGTTTATCCGATTCAAGGAGGTTAATTCTT-CC 172
Query 142 GAATACTTATAAC-CGCAGCGGTTTAAGCCGGTTTTCTCCGGGATTTGGTAACCGCCGGT 200
||| |||| | || | ||||||| |||||||||||||| ||||||| || ||||||||
Sbjct 173 GAAGACTTGT-ACTTACGGCGGTTTGAGCCGGTTTTCTCCAGGATTTGCTAGCCGCCGGT 231
Query 201 TATTTACGGTTAACCGGAAGAAATGGAGATCGGCGTGCATTTTCAACTCTGGGAAGGAAC 260
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 232 TATTTACGGTTAATCGGAAGAAATGGAGATCGGCCTGCATTTTCAACTCTGGAAAGGAAC 291
Query 261 CTGGAGGAGAGGGAAAGTTACAAGGAAGTAGCTCAGAGTGGCCGATACTTCAGAGATGGG 320
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 292 CTGGAGGAGAGGGAAAGTTACAAGGAGGTAGCTCAGAGTGGCCGATACTTCAGAGATGGG 351
Query 321 AAGTTCCATGGGGATGGCAGACAGTTTCGTTAACTTCGTTTGCTTGTGCATTAAGTTTTG 380
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 352 AAGTTCCATGGGGATGGCAGACAGTTTCGTTAACTTCGTTTGCTTGTGCACTAAGTTTTG 411
Query 381 TTTTGACAGGATTAACCGAGATGGCGGTCATACCGTTTTTAGGAATTGACGTTGAGAAAC 440
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 412 TTTTGACAGGATTAACCGAGATGGCAGTCATACCGTTTTTAGGAATCGACGTTGAGAAAC 471
Query 441 TGAGCTTGGACGATAAGGCAGAAATTTTGTTCCTGGATCAAGGCCTAACAACTGCGGTGG 500
||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct 472 TGACCTTGGACGATAAGGCGGAGATTTTGTTCCTGGATCAAGGCCTAACAACCGCGGTGG 531
Query 501 TACTTGCTGTCATATTCACTGTTGCCAAAACCTTCGACCCTCTTCCTGAAGATATTCTTC 560
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 532 TACTTGCTGTCATATTCACTGTTGCCAAAACCTTCGACCCACTTCCTGAAGATATTCTTC 591
Query 561 GCTATGATTTGAGACAACCCTTCAACCTGCAAAAAGGATGGCTCGTGTGGGGTGGAATCG 620
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 592 GCTATGATTTGAGACAACCCGTCAACCTGCAAAAAGGATGGCTTGTGTGGGGTGGAATCG 651
Query 621 GTCTGGTTGGTGCTGTTGGTGCTATTGCATTAACAGGTGTTGTTTTATCCGTGTTCAGGA 680
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 652 GTCTGGTTGGTGCTGTTGGTGCTATTGCGTTAACAGGTGTTGTTTTATCCGTGTTCAGGA 711
Query 681 CAGAGGCACCCGAAAGGGAGGTAGACTCTTTGATGAAGCTTCTCCCATTAATTGGATCCT 740
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 712 CAGAAGCACCTGAAAGGGAGGTAGACTCTTTGATGAAGCTTCTTCCATTAATTGGATCCT 771
Query 741 CAAACATAAGCACCTTAAGCTTAGTGGGCATAACTGGAATCCTTGCTCCACTTCTGGAGG 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CAAACATAAGCACCTTAAGCTTAGTGGGCATAACTGGAATCCTTGCTCCACTTCTGGAGG 831
Query 801 AGACCGTGTTTCGCGGATTCTTCATGGTCTCTCTTACCAAATGGGTCCCGACCCCAATAG 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AGACCGTGTTTCGCGGATTCTTCATGGTCTCTCTTACCAAATGGGTCCCGACCCCAATAG 891
Query 861 CGATCATCATCAGCTCAGCTGCCTTTGCCCTTGCCCATCTCACGCCGGGTGAATTCCCGC 920
|||||||||||||||||||||| ||||||||||||||| |||| || |||||||||||||
Sbjct 892 CGATCATCATCAGCTCAGCTGCGTTTGCCCTTGCCCATTTCACACCTGGTGAATTCCCGC 951
Query 921 AGCTGTTTATTCTAGGAAGTGTTTTGGGATTATCGTATGCACAAACCCGCAATCTCATTA 980
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 952 AGCTGTTTATTCTAGGAAGTGTTTTGGGATTATCATATGCACAAACCCGCAATCTCATTA 1011
Query 981 CCCCGATGGTCATACATGGTTTTTGGAACTCAGGAGTTATTTTGCTACTCACTTTTCTTC 1040
|||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1012 CCCCAATGGTCATACACGGTTTCTGGAACTCGGGAGTTATTTTGCTACTCACTTTTCTTC 1071
Query 1041 AGATCCAAGGGTATGACATTAAGGAACTATTGCAGGCAAACTAGCTCTGAGCTTTTCTCT 1100
||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 1072 AGATCCAAGGGTATGACATTAAGGAGCTATTGCAGGCAAACTAGCTCTGAGCCATGCTCT 1131
Query 1101 TTGTGCTGTCCGCATTTAACATCAAAAAGCTTCATTATGTGCTCGAT-TATGGTAAGATA 1159
||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 1132 TTGTGCTGTCCGCATTTAACATCAAAAAGCTTCATTATGTGCTCGATGT-TAGTAAGATA 1190
Query 1160 TTTTGTATTCGAGAAAATAATTCATACTTAATGCAATTTGGGTTTTGGTCGATTTATCTT 1219
||||||||||||||| | | ||||||||||||||||||||||||||||| || |||||||
Sbjct 1191 TTTTGTATTCGAGAACAGATTTCATACTTAATGCAATTTGGGTTTTGGTAGAGTTATCTT 1250
Query 1220 TATGTGATACAACATCGTGACAGTAATGTATGTACTAAAATGGTAGAGATGAATCTTTTT 1279
||| | | ||||||| ||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1251 TAT-T-A--CAACATCATGACAGTAATGTATGAACTAATATGGTAGAGATGAATCTTTTT 1306
Query 1280 GGAACAAAAA 1289
||||||||||
Sbjct 1307 GGAACAAAAA 1316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63403288335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5