BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471607
Length=1941
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14350.1 | Symbols: FLP, AtMYB124, MYB124 | Duplicated homeo... 2964 0.0
AT2G02820.2 | Symbols: MYB88 | myb domain protein 88 | chr2:804... 758 0.0
> AT1G14350.1 | Symbols: FLP, AtMYB124, MYB124 | Duplicated homeodomain-like
superfamily protein | chr1:4908255-4911168 FORWARD
LENGTH=2004
Length=2004
Score = 2964 bits (1605), Expect = 0.0
Identities = 1852/1966 (94%), Gaps = 38/1966 (2%)
Strand=Plus/Plus
Query 1 AAAAAGTTGAAGAAGTCATTGTGTGTGATAGGAGGACTTGG-GTTTTAAAAAAGGTAACG 59
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 7 AAAAAGTTGAAGAAGTCATTGTGTGTGATAGGAGGAGTTGGATTTTTAAAAAAGGTAACG 66
Query 60 GAGCGTCGAag-aaaataaatagataataaacagagac----aga-g--------ag--a 103
||||||||||| |||||||||||| ||||||||||||| ||| | || |
Sbjct 67 GAGCGTCGAAGAAAAATAAATAGAAAATAAACAGAGACAGAAAGAGGACATATACAGTAA 126
Query 104 g-aaacataaagagagaga-agtaaaaaag-aagaagaagaagaaaaatggaagatacga 160
| ||| ||||||||||||| ||| | ||| |||||||||||||||||||||||||||||
Sbjct 127 GAAAATATAAAGAGAGAGACAGT-AGTAAGAAAGAAGAAGAAGAAAAATGGAAGATACGA 185
Query 161 agaagaaaaagaagaagaaTATTAACAACAACCACGATTCCAAGAAAAAAGAGCGTCATA 220
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 186 AGAAGAAAAAGAAGAAGAATATTAACAACAACCAAGATTCCAAGAAAAAAGAGCGTCATA 245
Query 221 TTGTTACTTGGTCACAAGAGGAAGATGTTATACTAAGAGAACAAATTACTAAACATGGAA 280
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 246 TTGTTACTTGGTCACAAGAGGAAGATGTTATACTAAGAGAACAAATAACTCTACATGGAA 305
Query 281 CTGAAAATTGGGCGATCATTGCATCAAAGTTCAAAGATAAAAGCACAAGACAATGCAGAA 340
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 306 CTGAAAATTGGGCGATCATTGCATCAAAGTTCAAAGACAAAAGCACAAGACAATGCAGAA 365
Query 341 GAAGATGGTATACATACTTAAACTCTGATTTCAAAAGAGGAGGTTGGTCCCCTGAAGAAG 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GAAGATGGTATACATACTTAAACTCTGATTTCAAAAGAGGAGGTTGGTCCCCTGAAGAAG 425
Query 401 ATATGCTTTTGTGTGAGGCACAAAGAGTTTTTGGGAATAGATGGACTGAGATAGCAAAGG 460
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 426 ATATGCTTTTGTGTGAGGCACAAAGAGTATTTGGTAATAGATGGACTGAGATAGCAAAGG 485
Query 461 TGGTTTCAGGCAGAACTGATAATGCTGTGAAGAACAGGTTTACAACACTTTGTAAGAAGA 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TGGTTTCAGGCAGAACTGATAATGCTGTGAAGAACAGGTTTACAACACTTTGTAAGAAGA 545
Query 521 GAGCCAAGCATGAAGCTATGATGACTAAAGAGAACAACTCAAACAACAAAAGAATGTTGT 580
||||||||||||||||||||| ||||||| | ||||||||||| ||||||||||||||
Sbjct 546 GAGCCAAGCATGAAGCTATGA---CTAAAGACAGCAACTCAAACACCAAAAGAATGTTGT 602
Query 581 TCTTAGACGGTATCAGTACACCGCGAAAATCCGAGAATGAAGCTCCTATTGCTAAGAAAT 640
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 603 TCTTAGACGGTATCAGTACACCGCGAAAATCCGAGAATGAAACTCCTATTGCTAAGAAAT 662
Query 641 TGAAGAGAAGTCAGATTCTAGATCTCACAGAAATCAGTAACTATGGAAAGGCTGAGTCTT 700
||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||| | |
Sbjct 663 TGAAGAGAAGTCACATTCTAGATCTCACAGAGATCAGTAACTATGGAAGGGCCGAGGCAT 722
Query 701 GTGTCAATCAGCAGATAAGATCTCCATTTTCGGTATTAGCGCGAAATGCCACGGGTATTG 760
|||| |||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||
Sbjct 723 GTGTGAATCAGCAGATAAGGTCTCCATTTTCGGTTTTAGCTCGAAATGCCACTGGTATTG 782
Query 761 ATAGCTTGGATGATCAGAATCAAACAAGCAAGGTGAATGAGAGTGATGGTGAAGGGATGT 820
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 783 ATAGCTTGGAAGAACAGAATCAAACAAGCAATGTGAATGAGAGTGATGGTGAAGGGATGT 842
Query 821 TTCTTAAGAAGGATGATCCAAAAGTGACAGCTTTGATGCAGCAAGCTGAACTTTTAAGCT 880
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 843 TTCTTAAGAAGGATGATCCAAAAGTGACAGCTTTGATGCAACAAGCTGAACTTTTAAGCT 902
Query 881 CCTTGGCGCAGAAAGTTAATGCAGACAACACAGAACAAAGCATGGAGAATGCTTGGAAGG 940
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 903 CCTTGGCGCAGAAAGTTAATGCAGACAACACAGAACAGAGTATGGAGAATGCTTGGAAGG 962
Query 941 TTCTTCAGGATTTCTTGAATAAAGGCAAGGAGAATGATTTATTCAGATATGGATTACCTG 1000
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 963 TTCTTCAGGACTTCTTGAATAAAGGCAAGGAGAATGATTTATTCAGATATGGAATACCTG 1022
Query 1001 ATATCGATTTTAAAATCGAGGAATTTAAAGACCTTATTGAGGATTTGAGGAGTGGTTATG 1060
|||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1023 ATATAGATTTTAAGATCGAGGAATTTAAGGACCTTATAGAGGATTTGAGGAGTGGTTATG 1082
Query 1061 AAGACAATCAGCCATCTTGGAGGCAACCTGATCTCCATGACTCACCAGCTAGCTCTGAGT 1120
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1083 AAGACAATCAATTATCTTGGAGGCAACCTGATCTTCATGACTCACCAGCTAGCTCTGAGT 1142
Query 1121 ATAGTTCAGGATCAACCATCATGGTGGATCAGTCTAGTGATAGAACACAACCCTTCTCAG 1180
||||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct 1143 ATAGTTCCGGATCAACCATCATGGTGGATCAGTCTGGTGATAAAACACAACCATTCTCAG 1202
Query 1181 CTGATGATACTCAGACAGAACATAAGCAAGTTGGAGAGGAGTTGCTCGTCCCGAAAAATC 1240
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 C--A-GATACTCAGACAGAACATAAGCAAGTTGGAGAGGAGTTGCTCGTCCCGAAAAATC 1259
Query 1241 CTGATGAAAATATGCCTATCTCGGGCGAAGAAAAGTTCAGCTCGCCTATTCAAGTCACGC 1300
||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1260 CTGATGAGAATATGCCCATCTCAGGCGAAGAAAAGTTCAGCTCGCCTATTCAGGTCACGC 1319
Query 1301 CATTGTTCAGATCTTTGGCAGACGGTATCCCAAGTCCACAGTTCTCTGAAAGTGAGAGGA 1360
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1320 CATTGTTCAGATCTTTGGCAGACGGTATACCAAGTCCACAGTTCTCCGAAAGTGAGAGGA 1379
Query 1361 GCTTCCTGCTGAAAACTCTCGGGATTGAGTCCTCATCTCCATGTCCAAGTGCTAATCCTT 1420
|||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1380 GCTTCCTGCTAAAAACACTAGGGATCGAGTCCTCATCTCCATGTCCAAGTGCTAATCCTT 1439
Query 1421 CAAAACCACCCCCTTGCAAAAGAGTCCTTCTCCATAGCTTGTAAACCAACCAACCAACCA 1480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1440 CAAAACCACCCCCTTGCAAAAGAGTCCTTCTCCATAGCTTGTAAACCAACCAACCATC-- 1497
Query 1481 TCTCTCTT-CC-TAAACCGCGGTTTTGTCTCCCTGGAGACGTAATTTTTTCCCACTTTTG 1538
|||||| | || ||||||||||||| |||||| ||||||||||||||||||| |||||||
Sbjct 1498 TCTCTCATACCCTAAACCGCGGTTTAGTCTCCATGGAGACGTAATTTTTTCC-ACTTTTG 1556
Query 1539 CTTAGATTTCA-ATTTAGGTTCTGCAGCCATATCGGCCTGGAAGTTTTTGTGTAGCGGGC 1597
||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1557 CTTAGATTTCATATT-AGGTTTTGCAGCCATATCGGCCTGGAAGTTTTTGTGAAGCGGGC 1615
Query 1598 ATGCCATGATCTGCATTCCTCCCTCAAGGTTTTTTAAGTTTCTTTCTTGGTCCTAGAATG 1657
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1616 ATGCCATGATCTGCATTCCTCCCTCAAGGTTTTT-AAGTTTCTTTCCTGGTCCTAGAATG 1674
Query 1658 TTAACGGTAACATTT-CTAGCCCTGTCAAAGAAAGCTCTCAAGAATCTGCCATATACTCA 1716
||||||||||||||| ||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 1675 TTAACGGTAACATTTTCTAGCCCCATCAAAGAATGTTCTCAAGAATCTGCCATATACTCA 1734
Query 1717 GATTCAGATTTCTCGTTCTTTTCTTACTTAACATAAGGAAGCCATCTACAAAAGAAGGCA 1776
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 GATTCAGATTTCTCTTTCTTTTCTTACTTAACATAAGGAAGCCATCTACAAAAGAAGGCA 1794
Query 1777 GCAGTCTGTCTT-AAGaaaaaaaTTCTTTGGTTTGTCTCTAAGGGCATTACTCAGATACA 1835
|||| |||||| ||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1795 CCAGTGTGTCTTTAAGAAAAAA-TTCTTTGGTTTGTCTCTAAGGGCTTTACTCAGATACA 1853
Query 1836 TCATCTGAGCATTTTCCCCTGATTTCTTGATTTGTTTTCATCATCTCTGTACAGAATCTT 1895
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1854 TCATCTGAGCATTTTCCCCAGATTTCTTGATTTGTTTTCATCATCTCTGTACAGAATCTC 1913
Query 1896 TATCACATATATATAAAGAAGTTTTTCAGAGTGTAACTTTAGGAAA 1941
||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1914 TATCACATATATATAAAGAAGTTTTCCAGAGTGTAACTTTAGGAAA 1959
> AT2G02820.2 | Symbols: MYB88 | myb domain protein 88 | chr2:804174-807208
REVERSE LENGTH=2066
Length=2066
Score = 758 bits (410), Expect = 0.0
Identities = 836/1031 (81%), Gaps = 71/1031 (7%)
Strand=Plus/Plus
Query 162 gaagaaaaagaagaagaaTATTAACAACA-ACC-ACGATTCCAAGAAAAAAGAGCGTCAT 219
|||||| |||||||||| | || | || || | ||||||||||| || |||||||||
Sbjct 99 GAAGAAGAAGAAGAAGATTCTT--CTTCATTCCGATGATTCCAAGAAGAAGGAGCGTCAT 156
Query 220 ATTGTTACTTGGTCACAAGAGGAAGATGTTATACTAAGAGAA-CAAATTACTAAACATGG 278
|||||||||||||| | ||||| |||| ||||||||| ||| ||||| | | ||| ||
Sbjct 157 ATTGTTACTTGGTCTCCTGAGGAGGATGATATACTAAG-GAAGCAAATCAGTTTACAGGG 215
Query 279 AACTGAAAATTGGGCGATCATTGCATCAAAGTTCAAAGATAAAAGCACAAGACAATGCAG 338
||||||||||||||||||||||||||| ||||| || ||||| |||||||| || || ||
Sbjct 216 AACTGAAAATTGGGCGATCATTGCATCCAAGTTTAATGATAAGAGCACAAGGCAGTGTAG 275
Query 339 AAGAAGATGGTATACATACTTAAACTCTGATTTCAAAAGAGGAGGTTGGTCCCCTGAAGA 398
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 276 AAGAAGATGGTATACATACTTGAACTCTGATTTCAAGAGAGGAGGTTGGTCCCCTGAAGA 335
Query 399 AGATATGCTTTTGTGTGAGGCACAAAGAGTT-TTTGGGAATAGATGGACTGAGATAGCAA 457
||||| ||||||||||||||||| ||| || ||||||||||| ||||||||||||||||
Sbjct 336 AGATACACTTTTGTGTGAGGCACAGAGA-TTGTTTGGGAATAGGTGGACTGAGATAGCAA 394
Query 458 AGGTGGTTTCAGGCAGAACTGATAATGCTGTGAAGAACAGGTTTACAACACTTTGTAAGA 517
| ||||| ||||| ||||| |||||||||||||||||||||||||| ||||| || ||||
Sbjct 395 AAGTGGTCTCAGGAAGAACGGATAATGCTGTGAAGAACAGGTTTACTACACTGTGCAAGA 454
Query 518 AGAGAGCCAAGCATGAAGCTATGATGACTAAAGAGAACA--ACT-CA---------AAC- 564
|||| || ||||||||||||||| | | |||||||||| | | | |||
Sbjct 455 AGAGGGCTAAGCATGAAGCTATG--G-CGAAAGAGAACAGGATTGCTTGTTGTGTTAACT 511
Query 565 -A-ACAA-AAGA-A-TGTTGTTCTTAGACGGTATCAGTACACCGCGAAAATCCGAGAA-T 618
| |||| |||| | |||||||| ||| ||||| |||||||||| |||| |||| || |
Sbjct 512 CAGACAACAAGAGACTGTTGTTCCCAGATGGTATTAGTACACCGCTAAAAGCCGA-AAGT 570
Query 619 GAAGCTCCTATTGCTAAGAAATTGAAGAGAAGTCAGATTCTAGATCTCACAGAAAT---- 674
||| ||||| || |||||||| ||| ||||||||| |||| | |||| ||||| ||
Sbjct 571 GAATCTCCTCTTACTAAGAAAATGAGGAGAAGTCATATTCCAAATCTTACAGAGATTAAG 630
Query 675 --C-A-G----TA-A-CT-ATGGAAAGGCTGAGTCTTGTGTCAATCAGCAGATAAGATC- 722
| | | || | | || ||||| ||| || | | ||||| |||| |||| |
Sbjct 631 AGCTATGGGGATAGATCACATATAAAGGTTGAATCGACTATGAATCAACAGAGAAGA-CA 689
Query 723 TCCATTTTCGGTATTAGCGCGA-AATGCCACGGGTATTGATAGCTTG-GATGATCAGAAT 780
||||||||| ||| |||| | | |||||||| ||| |||| | | || || |||||
Sbjct 690 TCCATTTTCTGTAGTAGCCC-ACAATGCCACAAGTAGTGATGG-TACAGAGGAGCAGAAA 747
Query 781 CAAACAAGCAAGGTGAATGAGAGTGA---TG-G--T----G-AA----G-GGATGTTTCT 824
|||| | |||| ||||| |||||||| || | | | || | || |||||||
Sbjct 748 CAAATAGGCAATGTGAAAGAGAGTGACGGTGAGGATAAAAGTAACCAAGAGG-TGTTTCT 806
Query 825 TAAGAAGGATGATCCAAAAGTGACAGCTTTGATGCAGCAAGCTGAACTTTTAAGCTCCTT 884
||||||||||||| |||| ||||||||||||||||| |||||||||||| | || || ||
Sbjct 807 TAAGAAGGATGATTCAAAGGTGACAGCTTTGATGCAACAAGCTGAACTTCTCAGTTCATT 866
Query 885 GGCGCAGAAAGTTAATGCAGACAACACAGAACAAAGCATGGAGAATGCTTGGAAGGTTCT 944
||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 867 GGCCCAGAAAGTTAATGCAGACAACACAGACCAAAGCATGGAGAATGCCTGGAAGGTTCT 926
Query 945 TCAGGATTTCTTGAATAA-AGGCAAGGAGAATGATTTATTCAGATATGGATTACCTGATA 1003
||||||||||||||||| || ||| || |||||| |||| ||||||||| | || ||||
Sbjct 927 ACAGGATTTCTTGAATAAGAG-CAAAGAAAATGATCTATTTAGATATGGAATCCCAGATA 985
Query 1004 TCGATTTTAAAATCGAGGAATTTAAAGACCTTATTGAGGATTTGAGGAGTGGTTATGAAG 1063
| ||||| || |||| ||||||||||| ||| ||||||| ||||||||| || ||||||
Sbjct 986 TTGATTTCCAACTCGATGAATTTAAAGATCTTGTTGAGGACTTGAGGAGTAGTAATGAAG 1045
Query 1064 ACAATCAGCCATCTTGGAGGCAACCTGATCTCCATGACTCACCAGCTAGCTCTGAGTATA 1123
| | ||| |||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 1046 ATAGTCAATCATCTTGGAGGCAACCTGATCTCCATGATTCACCAGCAAGCTCTGAATATA 1105
Query 1124 GTTCAGGATCA 1134
| |||||||||
Sbjct 1106 GCTCAGGATCA 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96134043675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5