BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471608
Length=1747
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14370.1 | Symbols: APK2A, PBL2 | protein kinase 2A | chr1:4... 2627 0.0
AT2G02800.1 | Symbols: APK2B | protein kinase 2B | chr2:796680-... 989 0.0
AT1G14380.1 | Symbols: IQD28 | IQ-domain 28 | chr1:4918010-4921... 154 3e-36
> AT1G14370.1 | Symbols: APK2A, PBL2 | protein kinase 2A | chr1:4915576-4918138
FORWARD LENGTH=1743
Length=1743
Score = 2627 bits (1422), Expect = 0.0
Identities = 1652/1759 (94%), Gaps = 32/1759 (2%)
Strand=Plus/Plus
Query 1 TTTGCTTCAAATCCTCTGTCCTTCACCTTCCTTGTCCCTTCTTCTCTCCTCCTAtttttt 60
||||||||||||||||||| ||||||||||||||| |||||||||||||| || |||||
Sbjct 1 TTTGCTTCAAATCCTCTGTTCTTCACCTTCCTTGTTCCTTCTTCTCTCCTTCT-TTTTTA 59
Query 61 tCATAGATTTTCCTTTCATGTTGGAATACTTTTATTCTATTAGCGTTCATATTCAGCTAA 120
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 60 T-ATAGATTTTCCTTTCATGTTGTAATACTTTTATTCTATTAGCGTTCATATTCAGCTAA 118
Query 121 GCAGACATTGCGCCGCCGTTAAGTCTAAAGGATAG-AAG--A-GAAAG-AAGAAGAAACT 175
|||||||||||||||||||||||| ||||||||| ||| | |||| |||||||| ||
Sbjct 119 ACAGACATTGCGCCGCCGTTAAGTCGAAAGGATAGAAAGAAATTAAAGAAAGAAGAAGCT 178
Query 176 TGTTGTGTTGGCTTCTTCGAGGCT-TGTTCTTGTCTTGATCATCTGTTTCGTTGTTCCAC 234
|||||| || ||||||| |||||| | ||||||||||||||||||||| |||||||||||
Sbjct 179 TGTTGTCTTTGCTTCTT-GAGGCTCTCTTCTTGTCTTGATCATCTGTTACGTTGTTCCAC 237
Query 235 G---AGAACGA-TAGCTTTGTCTTTCGTTGTTCATTTATTATTTGAAATGGGTAATTGTT 290
| ||||| | ||||||||||| || | | ||||||| |||||||||||||||||
Sbjct 238 GAAAAGAAC-AGTAGCTTTGTCTCTCCATATAGGGTTATTATCTGAAATGGGTAATTGTT 296
Query 291 TAGATTCATCAGCTAAAGTGGATAATAGCAACCATAGCCCACATGCTAATTCTGCTTCTT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TAGATTCATCAGCTAAAGTGGATAATAGCAACCATAGCCCACATGCTAATTCTGCTTCTT 356
Query 351 CGGCCTCGAAAGTTTCGAGCAAGACAAGCCGTTCAACGGTTCCTTCAGGATTAAGCACAA 410
||| ||| |||||||| |||||||||||||||||||||| |||||||||| |||||||||
Sbjct 357 CGGGCTCTAAAGTTTCAAGCAAGACAAGCCGTTCAACGGGTCCTTCAGGACTAAGCACAA 416
Query 411 CTTCTTACAGCACAGATAGTAGTTTAGGACCATTACCAACGCTTAGGACAGAAGGAGAGA 470
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 417 CTTCTTACAGCACAGATAGTAGTTTTGGGCCATTACCAACACTTAGGACAGAAGGAGAGA 476
Query 471 TACTTTCATCGCCAAACTTAAAAGCTTTCACTTTCAACGAACTCAAGAACGCAACTAAGA 530
||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 477 TACTTTCATCGCCTAACCTAAAAGCTTTCACTTTCAACGAACTCAAGAACGCGACTAAGA 536
Query 531 ACTTTCGTCAAGATAATCTTCTAGGCGAAGGAGGTTTCGGTTGTGTATTCAAAGGATGGA 590
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 537 ACTTTCGTCAAGATAATCTACTAGGGGAAGGAGGTTTCGGTTGTGTATTCAAAGGATGGA 596
Query 591 TTGATCAAACATCTCTCACTGCTTCACG-CCCTGGTTCTGGAATCGTTGTTGCTGTTAAG 649
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 597 TTGATCAAACATCTCTCACTGCTTCACGTCCC-GGTTCTGGAATCGTTGTTGCTGTTAAG 655
Query 650 CTGCTTAAGCCTGAAGGTTTTCAAGGTCATAAAGAGTGGTTGACTGAAGTAAACTATCTT 709
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CAGCTTAAGCCTGAAGGTTTTCAAGGTCATAAAGAGTGGTTGACTGAAGTAAACTATCTT 715
Query 710 GGTCAACTTAGTCACCCAAATCTTGTATTACTCGTTGGATACTGCGCGGAAGGCGAAAAC 769
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 716 GGTCAACTTAGTCACCCAAATCTTGTATTACTAGTTGGGTATTGCGCGGAAGGCGAAAAC 775
Query 770 CGGCTTCTTGTATATGAATTCATGCCAAAAGGAAGCTTGGAGAATCATCTTTTTAGACGT 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CGGCTTCTTGTATATGAATTCATGCCAAAAGGAAGCTTGGAGAATCATCTTTTTAGACGT 835
Query 830 GGTGCGCAACCACTTACATGGGCGATAAGGATGAAAGTGGCAGTAGGTGCAGCTAAAGGG 889
|| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 836 GGGGCGCAGCCACTTACATGGGCAATAAGGATGAAAGTGGCGGTAGGTGCAGCTAAAGGG 895
Query 890 CTAACTTTTCTTCATGAAGCAAAGGCACAAGTGATATACAGAGACTTTAAAGCTGCTAAC 949
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 896 CTAACTTTTCTTCATGAAGCAAAGTCACAAGTGATATACAGAGACTTTAAAGCTGCTAAC 955
Query 950 ATTCTACTCGACGCTGAGTTCAATGCTAAGCTTTCGGATTTCGGATTGGCAAAAGCAGGG 1009
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 956 ATTCTACTCGACGCTGACTTCAATGCTAAGCTTTCAGATTTCGGATTGGCAAAAGCAGGT 1015
Query 1010 CCTACTGGTGATAATACACATGTGTCAACAAAGGTCATTGGTACTCATGGATATGCAGCA 1069
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CCTACTGGTGATAATACACATGTGTCAACAAAGGTCATTGGTACTCATGGATATGCAGCT 1075
Query 1070 CCTGAATATGTTGCCACAGGTAGATTAACCGCAAAGAGTGATGTGTACAGCTTCGGGGTC 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CCTGAATATGTTGCCACAGGTAGATTAACCGCAAAGAGTGATGTGTACAGCTTCGGGGTC 1135
Query 1130 GTACTACTAGAACTAATATCAGGACGGCGTGCCATGGACAAGTCAAATGGGGGAAACGAA 1189
|| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1136 GTGCTACTAGAACTAATATCAGGACGGCGTGCCATGGACAATTCGAATGGAGGAAACGAG 1195
Query 1190 TATAGTCTTGTGGACTGGGCAACACCGTACCTTGGCGATAAGCGAAAGCTTTTTCGCATA 1249
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TATAGTCTTGTAGATTGGGCAACACCGTACCTTGGCGATAAGCGAAAGCTTTTTCGCATA 1255
Query 1250 ATGGACACGAAACTAGGGGGTCAATATCCACAAAAGGGAGCTTTCACAGCTGCTAATCTT 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ATGGACACGAAACTAGGGGGTCAATATCCACAAAAGGGAGCTTTCACAGCTGCTAATCTT 1315
Query 1310 GCATTGCAATGCTTAAATCCTGATGCAAAACTCAGGCCGAAAATGTCAGAGGTTTTAGTC 1369
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 1316 GCATTGCAATGCTTAAATCCCGATGCAAAACTCCGGCCAAAAATGTCAGAGGTTTTAGTC 1375
Query 1370 ACATTAGAACAGCTAGAATCCGTTGCTAAACCTGGAACCAAACACACCCAAATGGAATCT 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 ACATTAGAACAGCTAGAATCCGTTGCTAAACCTGGAACCAAACACACCCAAATGGAATCT 1435
Query 1430 CCAAGATTTCATCATTCCTCTGTTATGCAGAAATCTCCGGTAAGATATAGTCATGATCGG 1489
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CCAAGATTTCATCATTCTTCTGTTATGCAGAAATCTCCGGTAAGATATAGTCATGATCGG 1495
Query 1490 CCTCTGCTGCACATTACTCCTGGTGCATCGCCTTTACCATCTTACAGTCAATCTCCTCGT 1549
|||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1496 CCTCTGCTGCACATGACTCCTGGTGCATCGCCTTTACCTTCTTACACTCAATCTCCTCGT 1555
Query 1550 GTAAGATGAAGCACATTTTAAGAAAATAGATCTTGCTTTATGCTTGTATATGTACTATAT 1609
|||||||||| ||||||| ||||||| ||||| |||||||||||||||| ||||||||||
Sbjct 1556 GTAAGATGAAACACATTT-AAGAAAACAGATCGTGCTTTATGCTTGTATGTGTACTATAT 1614
Query 1610 GTAAAATGCAGGATTTGAGATTCAGGTTTGTCTGTGTAATCGGAGAGGAGTGAATGCAAA 1669
|||||| | | | |||| ||||||||||||| ||||||||||| ||||||
Sbjct 1615 GTAAAA---A---T--G-----CAGGCTTGTCTGTGTAATTAGAGAGGAGTGATTGCAAA 1661
Query 1670 GGTTTGTACAGAGATGAACTATTTACTTAAACCT-TTTTGAGTCTTCAAACATATCAGAG 1728
||||| ||||||||| |||||||||||| ||| | ||||| |||||||||||||||||||
Sbjct 1662 GGTTTATACAGAGATTAACTATTTACTTCAAC-TATTTTGTGTCTTCAAACATATCAGAG 1720
Query 1729 TAAATTGAAGCAACATATG 1747
||||||||||||| |||||
Sbjct 1721 TAAATTGAAGCAAGATATG 1739
> AT2G02800.1 | Symbols: APK2B | protein kinase 2B | chr2:796680-799443
REVERSE LENGTH=1683
Length=1683
Score = 989 bits (535), Expect = 0.0
Identities = 1063/1312 (81%), Gaps = 60/1312 (5%)
Strand=Plus/Plus
Query 275 GAAATGGGTAATTGTTTAGATTCATCAGCTAAAGTGGATAATAGCAACCATAGCCCACAT 334
|||||||||||||| ||||||||||||||||||||||||| ||||| ||| || || |||
Sbjct 191 GAAATGGGTAATTGCTTAGATTCATCAGCTAAAGTGGATAGTAGCAGCCACAGTCCTCAT 250
Query 335 GCTAATTCTGCTTC-TTCG-GCCTCGAA-AGTTTCGAGCAAGACAAGCCGTTCAACGGTT 391
|||||||||||||| || | | ||| || |||||| ||||||||||| ||||| || |||
Sbjct 251 GCTAATTCTGCTTCATT-GAG-CTC-AAGAGTTTCTAGCAAGACAAGTCGTTCCACAGTT 307
Query 392 CCTTCAGGATTAAGCACAACTTCTTACAGCACAGATAGTAGTTTAGGACCATTACCAACG 451
|||||| | ||||||| || ||||||||| | ||| ||| | | | ||||| ||
Sbjct 308 CCTTCAAGCTTAAGCATAAATTCTTACAG--C----AGT-GTTGA-G-TCTTTACCTACA 358
Query 452 CTTAGGACAGAAGGAGAGATACTT-TCATCGCCAAA-CTTAAAAGCTTTCA-CTTTCAAC 508
| || |||||||||||||| || ||||| ||||| ||| |||||||||| |||| |||
Sbjct 359 CCAAGAACAGAAGGAGAGAT-TTTGTCATCACCAAATCTT-AAAGCTTTCACCTTT-AAC 415
Query 509 GAACTCAAGAACGCAACTAAGAACTTTCGTCAAGATAATCTTCTAGGCGAAGGAGGTTTC 568
|| ||||||||||| || | ||||||||| | |||| |||| |||| |||||||||||
Sbjct 416 GAGCTCAAGAACGCTACGAGGAACTTTCGACCCGATAGTCTTTTAGGTGAAGGAGGTTTT 475
Query 569 GG-T-TGTGTATTCAAAGGATGGATTGATCAAACAT-CTCTCACTGCTTCACGCCCTGGT 625
|| | ||||| || ||||| ||||||||| ||| | || | ||||||||| || |||
Sbjct 476 GGCTATGTGT-TT-AAAGGGTGGATTGATGGAAC-TACTTTAACTGCTTCAAAACCGGGT 532
Query 626 TCTGGAATCGTTGTTGCTGTTAAGCTGCTTAAGCCTGAAGGTTTTCAAGGTCATAAAGAG 685
|||||||| |||||||| |||||| |||||| ||||||||| ||||||||||||||||
Sbjct 533 TCTGGAATTGTTGTTGCGGTTAAGAAGCTTAAAACTGAAGGTTATCAAGGTCATAAAGAG 592
Query 686 TGGTTGACTGAAGTAAACTATCTTGGTCAACTTAGTCACCCAAATCTTGT-ATTACTCGT 744
|||||||||||||| |||||||||||||| ||||||||||||||||| || | ||| ||
Sbjct 593 TGGTTGACTGAAGTGAACTATCTTGGTCAGCTTAGTCACCCAAATCTCGTCA-AACTTGT 651
Query 745 TGGATACTGCGCGGAAGGCGAAAACCGGCTT-CTTGTATATGAATTCATGCCAAAAGGAA 803
||| || || | || || ||||||||| || || ||||| || ||||||||||||||||
Sbjct 652 TGGGTATTGTGTAGAGGGAGAAAACCGG-TTACTGGTATACGAGTTCATGCCAAAAGGAA 710
Query 804 GCTTGGAGAATCATCTTTTTAGACGTGGTGCGCAACCACTTACATGGGCGATAAGGATGA 863
|||||||||||||||||||||||||||| || || |||||||| ||||| ||||||||||
Sbjct 711 GCTTGGAGAATCATCTTTTTAGACGTGGCGCTCAGCCACTTACGTGGGCTATAAGGATGA 770
Query 864 AAGTGGCAGTAGGTGCAGCTAAAGGGCTAACTTTTCTTCATGAAGC-AAAGGCACAAGTG 922
|||| ||| |||| || || ||||| || |||||||| ||||| || ||| | ||||||
Sbjct 771 AAGTTGCAATAGGGGCTGCCAAAGGACTTACTTTTCTCCATGATGCGAAAT-CGCAAGTG 829
Query 923 ATATACAGAGACTTTAAAGCTGCTAACATTCTACTCGACGCTGAGTTCAAT-GCTAAGCT 981
||||||||||||||||||||||||||||||||||| || || || ||||| | ||| ||
Sbjct 830 ATATACAGAGACTTTAAAGCTGCTAACATTCTACTTGATGCGGAATTCAACAG-TAAACT 888
Query 982 TTCGGATTTCGGAT-TGGCAAAAGCAGGGCCTACTGGTGATAATACACATGTGTCAACA- 1039
||| || ||||| | | || |||||||| ||||| ||||| || || |||||||| |||
Sbjct 889 TTCAGACTTCGG-TCTAGCTAAAGCAGGTCCTACCGGTGACAAGACTCATGTGTCCACAC 947
Query 1040 AAGGTCATTGGTACTCATGGATATGCAGCACCTGAATATGTTGCCACAGGTAGATTAACC 1099
||| |||| |||||||| |||||||| || || |||||||| || |||||| |||||||
Sbjct 948 AAG-TCATGGGTACTCACGGATATGCTGCCCCGGAATATGTAGCAACAGGTCGATTAACT 1006
Query 1100 GCAAAGAGTGATGTGTACAGCTTCGGGGTCGTACTACTAGAACTAATATCAGGACGGCGT 1159
|| ||||| ||||| ||||| ||||| || |||||||| ||| || | |||||||| |
Sbjct 1007 GCTAAGAGCGATGTATACAGTTTCGGTGTGGTACTACTGGAATTACTCTCAGGACGAAGA 1066
Query 1160 GCCATGGACAAGTCAAATGGGGGAAACGAATATAGTCTTGTGGACTGGGCAACACCGTAC 1219
|| ||||||| ||||| | ||||| ||| | ||||| ||||||||||||||||||||
Sbjct 1067 GCGGTGGACAAATCAAAAGTGGGAATGGAACAGAGTCTAGTGGACTGGGCAACACCGTAT 1126
Query 1220 CTTGGCGATAAGCGAAAGCTTTTTCGCATAATGGACACGAAACTAGGGGGTCAATATCCA 1279
|| ||||| ||||| ||||| ||| | ||||||||||||| | |||| ||||| |||||
Sbjct 1127 CTCGGCGACAAGCGGAAGCTCTTTAGAATAATGGACACGAGATTAGGCGGTCAGTATCCT 1186
Query 1280 CAAAAGGGAGCTTTCACAGCTGCTAATCTTGCATTGCAATGCTTAAATCCTGATGCAAAA 1339
||||| ||||| | |||||| |||| ||||||||||||||||||||| ||||| ||||||
Sbjct 1187 CAAAAAGGAGCATACACAGCAGCTAGTCTTGCATTGCAATGCTTAAACCCTGACGCAAAA 1246
Query 1340 CTCAGGCCGAAAATGTCAGAGGTTTTAGTCACATTAGAACAGCTAGAATC--CGTTGC-T 1396
|| || ||||||||||| || ||||| | || |||||| ||||| ||||| || | |
Sbjct 1247 CTGAGACCGAAAATGTCGGAAGTTTTGGCCAAATTAGATCAGCTTGAATCAACGAAACCT 1306
Query 1397 A-AACCTGGAACC--AAACACACC--CA-A-ATGGAATCTCCAAGATTTCA-TCATTCCT 1448
||| |||| ||||| || || | || || || |||||| | | | || |
Sbjct 1307 GGAAC-TGGAGTTGGAAACAGACAAGCACAGATTGATTCCCCAAGAGGT-AGTAATGGAT 1364
Query 1449 CTGTTATGCAGAAATCTCC--GGTAAGATATAGTCATGATCGGCCTCTGCTG-CACATTA 1505
|| || | ||||||||||| || | | |||||| ||||||||||||| || ||||| |
Sbjct 1365 CTATTGTACAGAAATCTCCAAGG-AGG-TATAGTTATGATCGGCCTCT-CTTACACATAA 1421
Query 1506 CTCCTGGTGCATCGCCTTTACC-ATCTTACAGTCAATCTCCTCGTGTAAGAT 1556
|||||||||| || ||||| || | || ||| ||| ||||||||||||||||
Sbjct 1422 CTCCTGGTGCTTCTCCTTTGCCTA-CTCACAATCACTCTCCTCGTGTAAGAT 1472
> AT1G14380.1 | Symbols: IQD28 | IQ-domain 28 | chr1:4918010-4921596
REVERSE LENGTH=2436
Length=2436
Score = 154 bits (83), Expect = 3e-36
Identities = 106/117 (91%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 1632 CAGGTTTGTCTGTGTAATCGGAGAGGAGTGAATGCAAAGGTTTGTACAGAGATGAACTAT 1691
|||| ||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 2427 CAGGCTTGTCTGTGTAATTAGAGAGGAGTGATTGCAAAGGTTTATACAGAGATTAACTAT 2368
Query 1692 TTACTTAAACCT-TTTTGAGTCTTCAAACATATCAGAGTAAATTGAAGCAACATATG 1747
|||||| || || ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2367 TTACTTCAA-CTATTTTGTGTCTTCAAACATATCAGAGTAAATTGAAGCAAGATATG 2312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86395137945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5