BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471615
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding tran... 1568 0.0
AT2G02740.1 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding tra... 660 0.0
> AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding transcriptional
regulator | chr1:4929123-4930904 REVERSE LENGTH=1115
Length=1115
Score = 1568 bits (849), Expect = 0.0
Identities = 989/1052 (94%), Gaps = 27/1052 (3%)
Strand=Plus/Plus
Query 27 GAGAGGGAACAAACACAAAAGCAATGTCGCAACTCTTATCTTCTCCTCCAATGGCGGTCA 86
|||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 73 GAGAGGGAACAAACAC-AAAGCGATGTCGCAACTCTTATCGACTCCTCTAATGGCGGTCA 131
Query 87 ACTCCAATCCTCGCTTTCTCTCTTCGTCTTCAGCACTCGTCGCCGGCGGTTTTGCAGTGA 146
||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||
Sbjct 132 ACTCCAATCCTCGCTTTCTCTCTTCGTCTTCAGTACTCGTCACCGGAGGTTTTGCAGTGA 191
Query 147 AACGCCATGGATTCGCCTTGAAACCGACGACGAAGACGGTGAAGCTCTTATCGGTTAAGT 206
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 192 AACGGCATGGATTCGCCTTGAAACCGACGACGAAGACGGTGAAGCTCTTCTCGGTTAAGT 251
Query 207 CCCGCCAGACGGATTACTTCGAGAAGCAGAGATTCGGTGACtcttcttcttcttcttctC 266
| ||||||||||||||||||||||||||||| |||||||||||||||||||| || | ||
Sbjct 252 CTCGCCAGACGGATTACTTCGAGAAGCAGAGGTTCGGTGACTCTTCTTCTTC-TCCT-TC 309
Query 267 AAAATGCTGAAGGATTGCCTGCTAGATTTTACGTGGGTCATTCGATATACAAAGGGAAAG 326
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 -ACCTGCTGAAGGATTGCCTGCTAGATTTTACGTGGGTCATTCGATATACAAAGGGAAAG 368
Query 327 CTGCGCTAACAGTGGAGCCAAGAGCACCAGAGTTCGTGGCTTTAGACTCTGGAGCTTTCA 386
||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 369 CTGCGTTAACAGTGGACCCAAGAGCACCAGAGTTTGTGGCTTTAGACTCTGGAGCTTTCA 428
Query 387 AGTTGTCGAAAGATGGTTTCGTATTGCTCCAGTTTGCTCCTTCTGCTGGTGTACGACAAT 446
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 429 AGTTGTCAAAAGATGGTTTCTTATTGCTCCAGTTTGCTCCTTCTGCTGGTGTACGACAAT 488
Query 447 ATGATTGGAGCAAGAAACAGGTGTTCTCATTGTCTGTTACAGAAATCGGAACTCTAGTTA 506
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 489 ATGATTGGAGCAAGAAACAGGTGTTCTCATTGTCTGTTACAGAAATTGGAACTCTAGTTA 548
Query 507 GCCTAGGCCCGAGGGAATCTTGTGAATTCTTCCATGATCCATTCAAGGGGAAAAGTGATG 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GCCTAGGCCCGAGGGAATCTTGTGAATTCTTCCATGATCCATTCAAGGGGAAAAGTGATG 608
Query 567 AGGGAAAAGTGAGGAAAGTGTTGAAAGTTGAGCCTCTCCCAGATGGTTCTGGTCACTTCT 626
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 609 AGGGAAAAGTAAGGAAAGTGTTGAAAGTTGAGCCTCTCCCAGATGGTTCTGGTCATTTCT 668
Query 627 TCAACCTAAGTGTTCAAAACAAGCTTGTGAATGTGGATGAGAGCATTTACATACCAATTA 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TCAACCTAAGTGTTCAAAACAAGCTTGTGAATGTGGATGAGAGCATTTACATACCAATTA 728
Query 687 CTCGAGCAGAGTTTGCTGTTCTTATCTCTGCCTTCAATTTTGTCTTGCCTTACCTTATAG 746
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 729 CTCGAGCAGAGTTTGCTGTTCTTATCTCTGCATTCAATTTTGTCTTGCCTTACCTTATAG 788
Query 747 GCTGGAATGCATTTGCAAACTCCATCAAACCAGAAGACACAAACCGTGTGAACAACGCTT 806
||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 789 GCTGGCATGCATTTGCAAACTCCATCAAACCAGAAGAGACAAGCCGTGTGAACAACGCTT 848
Query 807 CGCCTAACTATGGAGGAGACTATGAATGGAATAGATGATGAATCTTAGGGCCATAATAGG 866
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 849 CGCCTAACTATGGAGGAGACTATGAATGGAATAGATGATGAATCTTAGGGCCATAACAGG 908
Query 867 AACATATATCAGAGATCATCCTAGTCCTACCCTTTTTGTTTTGCTGATAGGTTTCTTGAA 926
||||||||||||||||||||||| || | ||||||||||||||||||||||| | |
Sbjct 909 AACATATATCAGAGATCATCCTA--CC--C--TTTTTGTTTTGCTGATAGGTTTCGTCAG 962
Query 927 GATTGATATACGTTCGTAGGTAGCAGAAGAGACTAAAAGTAGTGTTACTTTTTCTTCCTT 986
|||||||||| |||||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 963 GATTGATATATGTTCGTAGGTAGCAGAAGAGACTAAAAGTAGT-TTATTTTTTCGTCCTT 1021
Query 987 TTGACCAAATGT--A---------T-T--TT--GTGTTAAGCGGTTGTATCTCAAAACAT 1030
|||||||||||| | | | || ||| |||||||||||||||||||||||
Sbjct 1022 TTGACCAAATGTTCAAAAGCCACATATCATTTCGTGGTAAGCGGTTGTATCTCAAAACAT 1081
Query 1031 CAGTCTGATCTTATTTGTTTTTGATTGAAGAG 1062
||||||||||||| |||||||||||| |||||
Sbjct 1082 CAGTCTGATCTTAGTTGTTTTTGATTTAAGAG 1113
> AT2G02740.1 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding transcriptional
regulator | chr2:769344-771235 FORWARD LENGTH=1094
Length=1094
Score = 660 bits (357), Expect = 0.0
Identities = 564/662 (85%), Gaps = 21/662 (3%)
Strand=Plus/Plus
Query 194 TTATCGGTTAAGTCCCGCCAGACG-GATTACTTCGAGAAGCAGAGATTCGGTGACtcttc 252
||| |||| ||||| || || | | |||||||| ||||| ||||| || ||||| |
Sbjct 205 TTAACGGTGAAGTCTCGACA-AAGTGATTACTTTGAGAAACAGAGGTTTGGTGA-----C 258
Query 253 ttcttcttcttctCAAAATGCTGAAGGAT-TGCCTGCTAGATTTTACGTGGGTCATTCGA 311
|| |||||||| ||||| ||||||| || | || ||||||||||||||||||||||||
Sbjct 259 -TCGTCTTCTTCGCAAAACGCTGAAGTATCT-TCTCCTAGATTTTACGTGGGTCATTCGA 316
Query 312 TATACAAAGGGAAAGCTGCGCTAACAG-TGGAGCCAAGAGCACCAGAGTTCGTGGCTTTA 370
| ||||||||||||||||| || || | | || ||| ||||||||||||| ||||||||
Sbjct 317 TTTACAAAGGGAAAGCTGCTCTTAC-GATAGAACCACGAGCACCAGAGTTTGTGGCTTTG 375
Query 371 GACTCTGGAGCTTTCAAGTTGTCGAAA-GATGGTTTCGTATTGCTCCAGTTTGCTCCTTC 429
|| ||||| || |||||| || | ||| || ||||| | |||||||| ||||||||| |
Sbjct 376 GAATCTGGTGCGTTCAAGCTGAC-AAAGGAAGGTTTTTTGTTGCTCCAATTTGCTCCTGC 434
Query 430 TGCTGGTGTACGACAATATGATTGGAGCAAGAAACAGGTGTTCTCATTGTCTGTTACAGA 489
|||||||| || |||||||||||||| | ||| ||||| ||||| ||||| ||||||||
Sbjct 435 AGCTGGTGTTCGTCAATATGATTGGAGTAGGAAGCAGGTCTTCTCGTTGTCGGTTACAGA 494
Query 490 AATCGG-AACTCTAGTTAGCCTAGGCCCGAGGGAATCTTGTGAATTCTTCCATGATCCAT 548
|||||| || |||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 495 AATCGGTAA-TCTAGTTAGCCTTGGGCCGAGGGAATCATGTGAATTCTTCCATGATCCAT 553
Query 549 TCAAGGGGAAA---AGTGATGAGGGAAAAGTGAGGAAAGTGTTGAAAGTTGAGCCTCTCC 605
||||||| ||| |||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 554 TCAAGGGAAAAGGTAGTGATGAAGGTAAAGTGAGGAAAGTGTTGAAAGTTGAGCCGCTCC 613
Query 606 CAGATGGTTCTGGTCACTTCTTCAACCTAAGTGTTCAAAACAAGCT-TGTGAATGTGGAT 664
||||||||||||| | |||||| ||||| ||||||||||||||||| | ||||||| |||
Sbjct 614 CAGATGGTTCTGGCCGCTTCTTTAACCTGAGTGTTCAAAACAAGCTCT-TGAATGTAGAT 672
Query 665 GAGAGCATTTACATACCAATTACTCGAGCAGAGTTTGCTGTTCTTATCTCTGCCTTCAAT 724
||||| | ||||||||||| ||| ||||||||||||||||||||||||||| |||||
Sbjct 673 GAGAGTGTATACATACCAATCACTAAAGCAGAGTTTGCTGTTCTTATCTCTGCTTTCAAC 732
Query 725 TTTGTCTTGCCTTACCTTATAGGCTGGAATGCATTTGCAAACTCCATCAAACCAGAAGAC 784
|| |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 733 TTCGTCTTGCCGCACCTTATAGGCTGGAGTGCATTTGCTAACTCCATCAAACCAGAAGAC 792
Query 785 ACAAACCGTGTGAACAACGCTTCGCCTAACTATGGAGGAGACTATGAATGGAATAGATGA 844
| ||||| | ||||| ||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 793 TCTAACCGCCTTAACAATGCTTCGCCTAAGTATGGAGGAGACTACGAATGGAGTAGATGA 852
Query 845 TG 846
||
Sbjct 853 TG 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5