BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471615 Length=1062 Score E Sequences producing significant alignments: (Bits) Value AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding tran... 1568 0.0 AT2G02740.1 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding tra... 660 0.0 > AT1G14410.1 | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding transcriptional regulator | chr1:4929123-4930904 REVERSE LENGTH=1115 Length=1115 Score = 1568 bits (849), Expect = 0.0 Identities = 989/1052 (94%), Gaps = 27/1052 (3%) Strand=Plus/Plus Query 27 GAGAGGGAACAAACACAAAAGCAATGTCGCAACTCTTATCTTCTCCTCCAATGGCGGTCA 86 |||||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||| Sbjct 73 GAGAGGGAACAAACAC-AAAGCGATGTCGCAACTCTTATCGACTCCTCTAATGGCGGTCA 131 Query 87 ACTCCAATCCTCGCTTTCTCTCTTCGTCTTCAGCACTCGTCGCCGGCGGTTTTGCAGTGA 146 ||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| Sbjct 132 ACTCCAATCCTCGCTTTCTCTCTTCGTCTTCAGTACTCGTCACCGGAGGTTTTGCAGTGA 191 Query 147 AACGCCATGGATTCGCCTTGAAACCGACGACGAAGACGGTGAAGCTCTTATCGGTTAAGT 206 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 192 AACGGCATGGATTCGCCTTGAAACCGACGACGAAGACGGTGAAGCTCTTCTCGGTTAAGT 251 Query 207 CCCGCCAGACGGATTACTTCGAGAAGCAGAGATTCGGTGACtcttcttcttcttcttctC 266 | ||||||||||||||||||||||||||||| |||||||||||||||||||| || | || Sbjct 252 CTCGCCAGACGGATTACTTCGAGAAGCAGAGGTTCGGTGACTCTTCTTCTTC-TCCT-TC 309 Query 267 AAAATGCTGAAGGATTGCCTGCTAGATTTTACGTGGGTCATTCGATATACAAAGGGAAAG 326 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 -ACCTGCTGAAGGATTGCCTGCTAGATTTTACGTGGGTCATTCGATATACAAAGGGAAAG 368 Query 327 CTGCGCTAACAGTGGAGCCAAGAGCACCAGAGTTCGTGGCTTTAGACTCTGGAGCTTTCA 386 ||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 369 CTGCGTTAACAGTGGACCCAAGAGCACCAGAGTTTGTGGCTTTAGACTCTGGAGCTTTCA 428 Query 387 AGTTGTCGAAAGATGGTTTCGTATTGCTCCAGTTTGCTCCTTCTGCTGGTGTACGACAAT 446 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 429 AGTTGTCAAAAGATGGTTTCTTATTGCTCCAGTTTGCTCCTTCTGCTGGTGTACGACAAT 488 Query 447 ATGATTGGAGCAAGAAACAGGTGTTCTCATTGTCTGTTACAGAAATCGGAACTCTAGTTA 506 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 489 ATGATTGGAGCAAGAAACAGGTGTTCTCATTGTCTGTTACAGAAATTGGAACTCTAGTTA 548 Query 507 GCCTAGGCCCGAGGGAATCTTGTGAATTCTTCCATGATCCATTCAAGGGGAAAAGTGATG 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 549 GCCTAGGCCCGAGGGAATCTTGTGAATTCTTCCATGATCCATTCAAGGGGAAAAGTGATG 608 Query 567 AGGGAAAAGTGAGGAAAGTGTTGAAAGTTGAGCCTCTCCCAGATGGTTCTGGTCACTTCT 626 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 609 AGGGAAAAGTAAGGAAAGTGTTGAAAGTTGAGCCTCTCCCAGATGGTTCTGGTCATTTCT 668 Query 627 TCAACCTAAGTGTTCAAAACAAGCTTGTGAATGTGGATGAGAGCATTTACATACCAATTA 686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 TCAACCTAAGTGTTCAAAACAAGCTTGTGAATGTGGATGAGAGCATTTACATACCAATTA 728 Query 687 CTCGAGCAGAGTTTGCTGTTCTTATCTCTGCCTTCAATTTTGTCTTGCCTTACCTTATAG 746 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 729 CTCGAGCAGAGTTTGCTGTTCTTATCTCTGCATTCAATTTTGTCTTGCCTTACCTTATAG 788 Query 747 GCTGGAATGCATTTGCAAACTCCATCAAACCAGAAGACACAAACCGTGTGAACAACGCTT 806 ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 789 GCTGGCATGCATTTGCAAACTCCATCAAACCAGAAGAGACAAGCCGTGTGAACAACGCTT 848 Query 807 CGCCTAACTATGGAGGAGACTATGAATGGAATAGATGATGAATCTTAGGGCCATAATAGG 866 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 849 CGCCTAACTATGGAGGAGACTATGAATGGAATAGATGATGAATCTTAGGGCCATAACAGG 908 Query 867 AACATATATCAGAGATCATCCTAGTCCTACCCTTTTTGTTTTGCTGATAGGTTTCTTGAA 926 ||||||||||||||||||||||| || | ||||||||||||||||||||||| | | Sbjct 909 AACATATATCAGAGATCATCCTA--CC--C--TTTTTGTTTTGCTGATAGGTTTCGTCAG 962 Query 927 GATTGATATACGTTCGTAGGTAGCAGAAGAGACTAAAAGTAGTGTTACTTTTTCTTCCTT 986 |||||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||||| Sbjct 963 GATTGATATATGTTCGTAGGTAGCAGAAGAGACTAAAAGTAGT-TTATTTTTTCGTCCTT 1021 Query 987 TTGACCAAATGT--A---------T-T--TT--GTGTTAAGCGGTTGTATCTCAAAACAT 1030 |||||||||||| | | | || ||| ||||||||||||||||||||||| Sbjct 1022 TTGACCAAATGTTCAAAAGCCACATATCATTTCGTGGTAAGCGGTTGTATCTCAAAACAT 1081 Query 1031 CAGTCTGATCTTATTTGTTTTTGATTGAAGAG 1062 ||||||||||||| |||||||||||| ||||| Sbjct 1082 CAGTCTGATCTTAGTTGTTTTTGATTTAAGAG 1113 > AT2G02740.1 | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding transcriptional regulator | chr2:769344-771235 FORWARD LENGTH=1094 Length=1094 Score = 660 bits (357), Expect = 0.0 Identities = 564/662 (85%), Gaps = 21/662 (3%) Strand=Plus/Plus Query 194 TTATCGGTTAAGTCCCGCCAGACG-GATTACTTCGAGAAGCAGAGATTCGGTGACtcttc 252 ||| |||| ||||| || || | | |||||||| ||||| ||||| || ||||| | Sbjct 205 TTAACGGTGAAGTCTCGACA-AAGTGATTACTTTGAGAAACAGAGGTTTGGTGA-----C 258 Query 253 ttcttcttcttctCAAAATGCTGAAGGAT-TGCCTGCTAGATTTTACGTGGGTCATTCGA 311 || |||||||| ||||| ||||||| || | || |||||||||||||||||||||||| Sbjct 259 -TCGTCTTCTTCGCAAAACGCTGAAGTATCT-TCTCCTAGATTTTACGTGGGTCATTCGA 316 Query 312 TATACAAAGGGAAAGCTGCGCTAACAG-TGGAGCCAAGAGCACCAGAGTTCGTGGCTTTA 370 | ||||||||||||||||| || || | | || ||| ||||||||||||| |||||||| Sbjct 317 TTTACAAAGGGAAAGCTGCTCTTAC-GATAGAACCACGAGCACCAGAGTTTGTGGCTTTG 375 Query 371 GACTCTGGAGCTTTCAAGTTGTCGAAA-GATGGTTTCGTATTGCTCCAGTTTGCTCCTTC 429 || ||||| || |||||| || | ||| || ||||| | |||||||| ||||||||| | Sbjct 376 GAATCTGGTGCGTTCAAGCTGAC-AAAGGAAGGTTTTTTGTTGCTCCAATTTGCTCCTGC 434 Query 430 TGCTGGTGTACGACAATATGATTGGAGCAAGAAACAGGTGTTCTCATTGTCTGTTACAGA 489 |||||||| || |||||||||||||| | ||| ||||| ||||| ||||| |||||||| Sbjct 435 AGCTGGTGTTCGTCAATATGATTGGAGTAGGAAGCAGGTCTTCTCGTTGTCGGTTACAGA 494 Query 490 AATCGG-AACTCTAGTTAGCCTAGGCCCGAGGGAATCTTGTGAATTCTTCCATGATCCAT 548 |||||| || |||||||||||| || ||||||||||| |||||||||||||||||||||| Sbjct 495 AATCGGTAA-TCTAGTTAGCCTTGGGCCGAGGGAATCATGTGAATTCTTCCATGATCCAT 553 Query 549 TCAAGGGGAAA---AGTGATGAGGGAAAAGTGAGGAAAGTGTTGAAAGTTGAGCCTCTCC 605 ||||||| ||| |||||||| || ||||||||||||||||||||||||||||| |||| Sbjct 554 TCAAGGGAAAAGGTAGTGATGAAGGTAAAGTGAGGAAAGTGTTGAAAGTTGAGCCGCTCC 613 Query 606 CAGATGGTTCTGGTCACTTCTTCAACCTAAGTGTTCAAAACAAGCT-TGTGAATGTGGAT 664 ||||||||||||| | |||||| ||||| ||||||||||||||||| | ||||||| ||| Sbjct 614 CAGATGGTTCTGGCCGCTTCTTTAACCTGAGTGTTCAAAACAAGCTCT-TGAATGTAGAT 672 Query 665 GAGAGCATTTACATACCAATTACTCGAGCAGAGTTTGCTGTTCTTATCTCTGCCTTCAAT 724 ||||| | ||||||||||| ||| ||||||||||||||||||||||||||| ||||| Sbjct 673 GAGAGTGTATACATACCAATCACTAAAGCAGAGTTTGCTGTTCTTATCTCTGCTTTCAAC 732 Query 725 TTTGTCTTGCCTTACCTTATAGGCTGGAATGCATTTGCAAACTCCATCAAACCAGAAGAC 784 || |||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 733 TTCGTCTTGCCGCACCTTATAGGCTGGAGTGCATTTGCTAACTCCATCAAACCAGAAGAC 792 Query 785 ACAAACCGTGTGAACAACGCTTCGCCTAACTATGGAGGAGACTATGAATGGAATAGATGA 844 | ||||| | ||||| ||||||||||| |||||||||||||| ||||||| ||||||| Sbjct 793 TCTAACCGCCTTAACAATGCTTCGCCTAAGTATGGAGGAGACTACGAATGGAGTAGATGA 852 Query 845 TG 846 || Sbjct 853 TG 854 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52007764620 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5