BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471616
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14420.1 | Symbols: AT59 | Pectate lyase family protein | ch... 2748 0.0
AT2G02720.1 | Symbols: | Pectate lyase family protein | chr2:7... 717 0.0
AT4G24780.1 | Symbols: | Pectin lyase-like superfamily protein... 115 1e-24
> AT1G14420.1 | Symbols: AT59 | Pectate lyase family protein |
chr1:4931566-4933515 REVERSE LENGTH=1768
Length=1768
Score = 2748 bits (1488), Expect = 0.0
Identities = 1679/1771 (95%), Gaps = 13/1771 (1%)
Strand=Plus/Plus
Query 1 AATCTTTTAATCCCGGCAGGCCTATCTGAAACCACAACCTCCGCTTGTGGTTTTGCCGGG 60
|||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct 1 AATCTTTTAATCCCGGCAGGCCTATCTGAAACAACAACCTCCGTTTGAGGTTTTGCCGGG 60
Query 61 AAAA-ATAAAGTTCATC-GGCTTT--TCCCCGCATTTGCAAAATAATTGAAATGGCAGCT 116
|||| |||||||||| | |||||| || | |||||||||| ||| || ||||||||||
Sbjct 61 AAAATATAAAGTTCA-CAGGCTTTGGTCTCTGCATTTGCAATATATTTAAAATGGCAGCA 119
Query 117 GTGTTT-TTGAATCTTGGCGGCTACGTTTTTGTTTTCTTCTCGTCGTTCTTAGCTATAGT 175
| ||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 120 G-CTTTCTTGAATCTTGGCGGCTATGTTTTCGTTTTCTTCTCTTCGTTCTTAGCTATAGT 178
Query 176 GGCCCCACAGGTTCGAGCCAATGTTGCTGTCTTTGATAGCTACTGGACGCAGCGTCAAAG 235
||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 179 GGCCCCACAGGTTCGAGGCAATGTTGCTGTCTTTGATAGCTACTGGACGCAACGACAAAG 238
Query 236 CGATGCATTGAAACAGACCATGGGATCTTACGATCCTAATCCAATTAACGTCACCAACCA 295
|||||||||||||| ||||| || |||||||||||| ||||| ||||||||||||||||
Sbjct 239 TGATGCATTGAAACAAACCATCGGCTCTTACGATCCTCATCCACTTAACGTCACCAACCA 298
Query 296 TTTTAATTACCATGTCAATATAGCAGTGGATGTATCGGAATCAAACAACGATACAAGGAG 355
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 299 TTTTAATTACCATGTCAATATAGCAGTGGATGCATCGGAATCAAGGAACGATACAAGGAG 358
Query 356 AGAGCTTACTCAGGTGAGAAGTGGTCGTAAAAC-aaaaaaaCACAGCGGAAAATGCCTGG 414
||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| |
Sbjct 359 AGAGCTTACTCAGGTGAGAAGTGGTCGTAAAACGCACAAAA-GCAGCGGAAAATGCCTAG 417
Query 415 CTTATAACCCGATAGACAAATGCTGGCGATGCGATCGTAACTGGGCGAAAAACCGGAAGA 474
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 418 CTTATAACCCGATAGACAACTGCTGGCGATGCGATCGTAACTGGGCTAATAACCGGAAGA 477
Query 475 AACTAGCGGATTGTGTGCTCGGATTCGGCCGGAGAACCACTGGAGGAAAAGACGGACCGA 534
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 478 AACTAGCCGACTGTGTGCTCGGATTCGGCCGGAGAACCACCGGAGGAAAAGACGGACCGA 537
Query 535 TATACGTCGTCAAGGACGCGTCTGACGATGATCTTATCAACCCTAAACCAGGAACGCTAA 594
||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 538 TATACGTCGTCAAAGACGCGTCTGACAACGATCTTATCAACCCTAAACCAGGAACGTTAA 597
Query 595 GGCATGCAGTGACTCGAAACGGACCGCTTTGGATCATATTCGCAAGAAGCATGATCATAA 654
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGCATGCAGTGACTCGAGACGGACCGCTTTGGATCATATTCGCAAGAAGCATGATCATAA 657
Query 655 AACTGCAACAAGAACTGATGATAACTAGCGACAAAACAATCGATGGAAGAGGAGCTAGGG 714
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 658 AACTGCAACAAGAACTGATGATAACGAGCGACAAAACAATCGATGGAAGAGGAGCTAGGG 717
Query 715 TTTACATCATGGAAGGTGCTGGATTAACGTTGCAATATGTAAATAATGTGATCATACACA 774
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct 718 TTTACATCATGGAAGGTGCTGGATTAACGTTGCAATTTGTGAATAATGTGATCATTCACA 777
Query 775 ATATTTATGTCAAGCACATTGTTCCTGGGAACGGTGGGTTGATCAGAGACTCTGAGGATC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 778 ATATTTATGTCAAGCACATTGTTCCTGGGAACGGTGGGTTGATCAGAGACTCTGAGGCTC 837
Query 835 ACATAGGGCTTAGGACAAAAAGCGATGGTGATGGAATCAGCTTGTTTGGAGCAACCAATA 894
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 838 ACATAGGGCTTAGGACAAAAAGTGATGGTGATGGAATCAGTTTGTTTGGAGCAACCAATA 897
Query 895 TTTGGATCGATCATGTCTCAATGACAAGATGTGCAGATGGTATGATCGATGCTATTGACG 954
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTTGGATCGACCATGTCTCAATGACAAGATGTGCAGATGGTATGATCGATGCTATTGACG 957
Query 955 GCTCCACTGCTGTAACTATTTCCAATAGTCATTTCACCGACCACCAAGAGGTGATGTTGT 1014
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 958 GCTCCACTGCTGTAACTATTTCCAACAGTCATTTCACCGACCACCAAGAGGTGATGTTGT 1017
Query 1015 TTGGGGCGAGGGATGAACACGTGATAGACAAGAAAATGCAGATAACGGTTGCGTTTAACC 1074
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1018 TTGGGGCGAGGGACGAACACGTGATCGACAAGAAAATGCAGATAACGGTTGCGTTTAACC 1077
Query 1075 ACTTCGGTAAGAGATTGGAACAGAGAATGCCTCGTTGCAGATATGGAACAATCCATGTGG 1134
||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 1078 ACTTCGGTAAGCGATTGGAACAGAGAATGCCTCGTTGCAGATACGGAACGATACATGTGG 1137
Query 1135 TGAACAATGACTACACACATTGGGAAATGTATGCAATTGGTGGAAACATGAACCCTACAA 1194
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1138 TGAACAATGACTACACACATTGGGAAATGTATGCAATTGGTGGGAACATGAACCCTACAA 1197
Query 1195 TTATTAGTCAAGGCAATCGTTTCATTGCTCCTCCTAACGAACAAGCCAAACAGATTACAA 1254
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1198 TTATTAGTCAAGGCAATCGTTTCATTGCTCCTCCTAATGAAGAAGCCAAACAGATTACAA 1257
Query 1255 AGAGAGAGTACACACCATACACTGAATGGAAATCTTGGAATTGGCAATCAGAAGGAGATT 1314
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AAAGAGAGTACACACCATACGGTGAATGGAAATCTTGGAATTGGCAATCAGAAGGAGATT 1317
Query 1315 ACTTCCTCAACGGAGCTTATTTTGTGCAATCCGGGAAAGCAAATGCGTGGAGCTCTAAAC 1374
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1318 ACTTTCTCAACGGAGCTTATTTTGTGCAATCCGGAAAAGCAAATGCGTGGAGCTCTAAAC 1377
Query 1375 CGAAAAACCCGCTCCCGAACAAGTTTGCAATTCGACCTAAACCGGGAACGATGGTCCGGA 1434
|||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1378 CGAAAACCCCGCTCCCAAACAAGTTTACAATTCGACCTAAACCGGGAACGATGGTCCGGA 1437
Query 1435 AACTTACCATGGATGCAGGAGCACTTGGCTGCAAACAGGGTAAAGCTTGCTGATTACATT 1494
||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 1438 AACTTACCATGGATGCAGGAGTACTTGGCTGCAAACTTGGTGAAGCTTGCTGATTACATA 1497
Query 1495 ACCATTTTTTCCCCTTCCAACAAACAGACAAAGCTTTTGCCCTGTTTTTGCTTGTTGTTC 1554
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1498 ACCATTTTGCCCCCTTCCAACAAACAGCCAAAGCTTTTGCCCTGTTTTTGCTTGTTGTTC 1557
Query 1555 AAGAAAAACAATATGgagagagaggagagaAAACTAAAGAGAATGTTTTTCTATGAATGG 1614
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1558 AAGAAAAACAATATGGAGAGAGAGGAGAGAAAACGAAAGAGAATGTTTTTCTATGAATGG 1617
Query 1615 TGTTTTGTAACTAAGACTGCATATATAATGCGCAGTTT-CGGATTTATTATTCTTAATAG 1673
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1618 TGTTTTGTAACTAAGACTGCATATATAATGCGCAGTTTTCGGATT-ATTATTCTTAATAG 1676
Query 1674 GATCCAGGTTCCTTTTTCTACGGAAAAATGAGAAAAGCAAAATACCTTAGATATCTATAT 1733
|||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||
Sbjct 1677 GATCCAGGTTCCTTTTTCTACGGAAAAATGAGAAAATCAAAATACCTTAGATCT-T-TAT 1734
Query 1734 ACTAAATATACAATCTCCTCCTAATACTTTC 1764
||||| |||||||||||||| ||||||||||
Sbjct 1735 ACTAATTATACAATCTCCTCGTAATACTTTC 1765
> AT2G02720.1 | Symbols: | Pectate lyase family protein | chr2:763011-765027
FORWARD LENGTH=1723
Length=1723
Score = 717 bits (388), Expect = 0.0
Identities = 852/1073 (79%), Gaps = 44/1073 (4%)
Strand=Plus/Plus
Query 420 AACCCGATAGACAAATGCTGGCGATGCGATC-GTAACTGGG-CGAAAAACCGGAAGAAAC 477
||| |||| || |||||||||||| |||| | ||||||| | |||||| |||| ||||
Sbjct 463 AACGCGATCGATAAATGCTGGCGAGGCGA-CAAAAACTGGGAC-AAAAACAGGAAAAAAC 520
Query 478 TAGCGGATTGTGTGCTCGGATTCGGCCGGAGAACCACTGGAGG-AAAAGACGGACCGATA 536
|||| |||||||| |||||||| ||||||| ||| || ||||| |||| ||||||||||
Sbjct 521 TAGCAGATTGTGTCCTCGGATTTGGCCGGAAAACAACCGGAGGCAAAA-ACGGACCGATC 579
Query 537 TACGTCGTCAAGGACGCGTCTGACGATGATCTTA-TCAACCCTAAACCAGGAACGCTAAG 595
|| || |||| ||| | || ||| | |||| || | || || |||||||| || ||||
Sbjct 580 TATGTAGTCACTGACCCATCCGACAACGATC-TACTAAAACCAAAACCAGGGACTATAAG 638
Query 596 GCATGCAGTGACTCGAAACGGACCGCTTTGGATCATATTCGCAAGAAGCATGATCATAAA 655
||| || ||||| | || |||| || |||||||| || || |||||||||||||||||
Sbjct 639 GCACGCCGTGACAAGGGACCGACCACTCTGGATCATCTTTGCGAGAAGCATGATCATAAA 698
Query 656 ACTGCAACAAGAACTGATGATAACTAGCGACAAAACAATCGATGGAAGAGGAGCTAGGGT 715
|||||||||||||||||| ||||| | || ||||||||||| || | ||||| | |
Sbjct 699 ACTGCAACAAGAACTGATCATAACGAATGATAAAACAATCGACGGTCGGGGAGCGAAAAT 758
Query 716 TTACATCA-TGGAAGGTGCTGGATTAACGTTGCAATAT-GTAAATAATGTGATCATACAC 773
||| |||| ||| ||||| || ||||||||||| | | || | |||||||| |||||
Sbjct 759 TTATATCACTGG-GGGTGCAGGTTTAACGTTGCAGT-TCGTCAGGAATGTGATAATACAT 816
Query 774 AATATTTATGTCAAGCACATTGTTCCTGGGAAC-GGTGGGTTGATCAGAGACTCTGAGGA 832
|||||| || |||| || ||| |||| | ||||||||||| | |||||| ||| |
Sbjct 817 AATATTCATATCAAACAGATT-AAAAGGGGAGCTGGTGGGTTGATTATAGACTCCGAGCA 875
Query 833 TCACATAGGGCTTAGGACAAAAAGCGATGGTGAT-GGAATCAGCTTGTTTGGAGCAACCA 891
|| | |||||| ||||| || ||||| ||| ||| | | || ||||||||||| |
Sbjct 876 ACATTTTGGGCTTCGGACAGTGAGTGATGGCGATGGGATTAATATT-TTTGGAGCAACGA 934
Query 892 ATATTTGGATCGATCATGTCTCAATGACAAGA-TGTGCAGATGGTATGATCGATGCTATT 950
|| ||||||||||||||||||||||||| || ||| | ||||| ||||| ||||| | |
Sbjct 935 ATGTTTGGATCGATCATGTCTCAATGAC-GGATTGTTCTGATGGGATGATTGATGCGA-T 992
Query 951 GA-CGGCTCCACTGCTGTAACTATTTCCAATAGTCATTTCACCGACCACCAAGAGGTGAT 1009
| || || ||||| | ||||| |||||| ||||| ||||||||| | ||||||||
Sbjct 993 CATGGGATCGACTGCAATTACTATCTCCAATTCCCATTTTACCGACCACGACGAGGTGAT 1052
Query 1010 GTTGTTTGGGGCG-AGGGATGAA-CACGTGATAGACAAGAAAATGCAGATAACGGTTGCG 1067
| | ||||||| | | | || | ||||| |||||||||||||||||||| ||||||
Sbjct 1053 GCTATTTGGGG-GTA-CAAACAAGGATGTGATCGACAAGAAAATGCAGATAACAGTTGCG 1110
Query 1068 TTTAACCACTTCGGTAAGAGATTGGAA-CAGAGAATGCCTCGTTG-CAGATATGGAACAA 1125
|||||||| || ||||||||||| ||| || ||||||||| | | ||||| |||
Sbjct 1111 TTTAACCATTTTGGTAAGAGATT-GAAGCAAAGAATGCCTAG-AGTCAGATTTGGTTTGG 1168
Query 1126 TCCATGTGGTGAACAATGACTACACACATTGGGAAATGTATGCAATTGGTGGAAACATGA 1185
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1169 TCCATGTTGTGAACAATGACTACACTCACTGGGAAATGTATGCAATTGGTGGAAACATGA 1228
Query 1186 ACCCTACAATTATTAGTCAAGGCAATCGTTTCATTGCTCCTCCTAACGAACAAGCCAAAC 1245
||||||| ||||| ||||||||||||||||||||||||||||||| ||| | |||| |
Sbjct 1229 ACCCTACCATTATAAGTCAAGGCAATCGTTTCATTGCTCCTCCTATTGAAGATTCCAAGC 1288
Query 1246 AGATTACAAAGAGAGAGTACACACCATA-CACTGAATGGAAATCTTGGAATTGGCAATCA 1304
|| |||||||||||||||||||||| || | ||||||||||||| ||||| |||||||||
Sbjct 1289 AGGTTACAAAGAGAGAGTACACACCTTATC-CTGAATGGAAATCATGGAACTGGCAATCA 1347
Query 1305 GAAGGA-GATTACTTCCTCAACGGAGCTTATTTTGTGCAATCCGGGAAAG-CAAATGCGT 1362
|| | | ||||| ||| | || |||||||| ||||||||||| || |||| | || ||||
Sbjct 1348 GA-GAAAGATTATTTCTTGAATGGAGCTTACTTTGTGCAATCAGG-AAAGGCGAACGCGT 1405
Query 1363 GGAGCTCTAAACCGAAAAAC-CCGCTCCCGA-ACAAGTTTGCAATTCGACCTAAA-CCGG 1419
||||| | || || ||||| || |||| | | ||||||||||| || || | | || |
Sbjct 1406 GGAGCGC-AACCCCAAAAAATCCAATCCCTAGA-AAGTTTGCAATCCGGCC-ACAGCCAG 1462
Query 1420 GAACGATGGTCCGGAA-ACTTACCATGGATGCAGG-AGCACTTGGCTGCAAAC 1470
|||| | |||| | || |||||||| |||||| || | | |||||||||||||
Sbjct 1463 GAACAAAGGTCAG-AAGACTTACCAAGGATGCTGGTA-CGCTTGGCTGCAAAC 1513
> AT4G24780.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:12770331-12772333 REVERSE LENGTH=1633
Length=1633
Score = 115 bits (62), Expect = 1e-24
Identities = 139/174 (80%), Gaps = 14/174 (8%)
Strand=Plus/Plus
Query 1041 GACAAGAAAATGC-AGATAACGGTTGCGTTTAACCACTTCGGT-AAGAG-ATTGGAACAG 1097
|||||||| |||| || | || |||| |||||||| || ||| ||| | || | ||
Sbjct 905 GACAAGAATATGCAAG-TTACCATTGCTTTTAACCATTTTGGTGAAG-GCCTT-GTCCAA 961
Query 1098 AGAATGCCTC-GTTGCAGATATGGA-ACAATCCATGTGGTGAACAATGACTACACACATT 1155
|||||||| | | || ||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 962 AGAATGCC-CAGGTGTAGACATGGATAC-TTCCATGTGGTGAACAATGACTACACACATT 1019
Query 1156 GGGAAATGTATGCAATTGGTGGAAA--CATGAACCCTACAATTATTAGTCAAGG 1207
|||| |||||||| |||||||||| | | || |||||||| | |||||||||
Sbjct 1020 GGGAGATGTATGCGATTGGTGGAAGTGC-T-AATCCTACAATCAATAGTCAAGG 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87248547210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5