BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471623
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14490.1 | Symbols: | Predicted AT-hook DNA-binding family ... 1009 0.0
AT5G49700.1 | Symbols: | Predicted AT-hook DNA-binding family ... 497 5e-140
> AT1G14490.1 | Symbols: | Predicted AT-hook DNA-binding family
protein | chr1:4958514-4959325 REVERSE LENGTH=812
Length=812
Score = 1009 bits (546), Expect = 0.0
Identities = 749/838 (89%), Gaps = 50/838 (6%)
Strand=Plus/Plus
Query 1 ATGGAAACCGTCGGCCGTCCACGTGGCAGACCTCGAGGTTCCAAAAACAAACCTAAAGCT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAACCGTCGGGCGTCCACGTGGCAGACCTCGAGGTTCCAAAAACAAACCTAAAGCT 60
Query 61 CCAATCTTTGTAACCATCGACCCTCCTATGAGTCCTTACATCCTCGAAGTGCCATCCGGA 120
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAATCTTTGTCACCATTGACCCTCCTATGAGTCCTTACATCCTCGAAGTGCCATCCGGA 120
Query 121 AACGACGTCGTTGAAGCCCTAAACCGTTTCTGCCGCCGTAAAGCCATCGGCTTTTGCGTC 180
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 AACGATGTCGTTGAAGCCCTAAACCGTTTCTGCCGCGGTAAAGCCATCGGCTTTTGCGTC 180
Query 181 CTCAGTGGCTCAGGCTCCGTCGCTGATGTCACCTTGCGTCAGCCTTCTCCGGCAGCTCCT 240
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CTCAGTGGCTCAGGCTCCGTTGCTGATGTCACTTTGCGTCAGCCTTCTCCGGCAGCTCCT 240
Query 241 GGCTCAACCATTACTTTCCACGGAAAGTTCGATCTTCTCTCTGTCTCCGCCACTTTCCTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCTCAACCATTACTTTCCACGGAAAGTTCGATCTTCTCTCTGTCTCCGCCACTTTCCTC 300
Query 301 CCTCCTCCGCCTCAGACTTCCTTGCCCCCTCCCTTCTCTAATTTCTTCACCGTCTCTCTC 360
||||||| |||| || |||||| |||||||| |||| |||||||||||||||||||||
Sbjct 301 CCTCCTCTACCTCCTACCTCCTTGTCCCCTCCCGTCTCCAATTTCTTCACCGTCTCTCTC 360
Query 361 GCCGGACCTCAGGG-ACAAGTCATCGGTGGATTCGTCGCTGGTCCTCTCGTTGCCGCCGG 419
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCCGGACCTCAGGGGA-AAGTCATCGGTGGATTCGTCGCTGGTCCTCTCGTTGCCGCCGG 419
Query 420 AACTGTTTACGTCGTCGCTACTAGTTTCAATAACCCTGCCTATCACCGGTTACCCGCTGC 479
|||||||||| ||||||| ||||||||||| |||||| |||||||||||||||| ||| |
Sbjct 420 AACTGTTTACTTCGTCGCCACTAGTTTCAAGAACCCTTCCTATCACCGGTTACCTGCTAC 479
Query 480 GGAGGAAGAGCAAAGAAACTCAGCGGAAGGGGA-G-GGC----CAATCGCCGCCGGTCTC 533
||||||||||||||||||||| ||||||||||| | || |||||||||||||||||
Sbjct 480 GGAGGAAGAGCAAAGAAACTCGGCGGAAGGGGAAGAGGAGGGACAATCGCCGCCGGTCTC 539
Query 534 TGGAGGTGGTGGAGAGTCGATGTACAGTTGCCACATGGGTGGCTCTGATGTCATTTGGTC 593
||||||||||||||||||||||||| || | || |||||||||||||||||||
Sbjct 540 TGGAGGTGGTGGAGAGTCGATGTAC-GT-G------GG-TGGCTCTGATGTCATTTGGGA 590
Query 594 TCCCAACGCCAAAGCTCCACCGTCGCACTGACCA-AA-TCCATCT-----A-----GGGT 641
||||||||||||||||||| || || |||||||| || ||||||| | ||||
Sbjct 591 TCCCAACGCCAAAGCTCCATCGCCGTACTGACCACAAATCCATCTCGTTCAAACTAGGGT 650
Query 642 TTCTTCTACTTTTGATCATCAAGAATCAACAAAAAGTTTGCATTTTTTGTCTTGCTAGAG 701
||||||| |||| ||||||||||||||||||||||| |||||||||| | || ||
Sbjct 651 TTCTTCTTCTTTAGATCATCAAGAATCAACAAAAAGATTGCATTTTTAGA-TT-CT---- 704
Query 702 tttttttAATATCAGAATTGACTCACTCTTTAAGCTCTTAATCTCTCTCACACTTGTTGT 761
|| | ||||||| |||||||||||||||||| ||| |||| |||| || || |
Sbjct 705 TTGT---AATATCATAATTGACTCACTCTTTAA--TCT----CTCTATCAC--TTCTTCT 753
Query 762 TTAGCTTTTTTCTGCAGTGTCAAACTTCATATATT---AGTTTGATTTGACTATCCCC 816
|||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 754 TTAGCTTTTT-CTGCAGTGTCAAACTTCACATATTTGTAGTTTGATTTGACTATCCCC 810
> AT5G49700.1 | Symbols: | Predicted AT-hook DNA-binding family
protein | chr5:20192599-20193429 FORWARD LENGTH=831
Length=831
Score = 497 bits (269), Expect = 5e-140
Identities = 464/555 (84%), Gaps = 26/555 (5%)
Strand=Plus/Plus
Query 16 CGTCCACGTGGCAGACCTCGAGGTTCCAAAAACAAACCTAAAGCTCCAATCTTTGT-A-A 73
||||||||||||||||| | |||||||||||||||||||||| | || |||| || | |
Sbjct 169 CGTCCACGTGGCAGACCACCAGGTTCCAAAAACAAACCTAAACCACCCGTCTTCGTCACA 228
Query 74 C----CATCGACCCTCCTATGAGTCCTTACATCCTCGAAGTGCCATCCGGAAACGACGTC 129
| || ||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 229 CGTGACACCGACCCTCCTATGAGTCCTTACATCCTCGAAGTTCCTTCAGGAAACGACGTC 288
Query 130 GTTGAAGCCCTAAACCGTTTCTGCCGCCGTAAAGCCATCGGCTTTTGCGTCCTCAGTGGC 189
|| |||||| | ||||||||||||||||||||| ||||||| | |||||||| ||||||
Sbjct 289 GTCGAAGCCATCAACCGTTTCTGCCGCCGTAAATCCATCGGAGTCTGCGTCCTTAGTGGC 348
Query 190 TCAGGCTCCGTCGCTGATGTCACCTTGCGTCAGCCTTCTCCGGCAGCTCCTGGCTCAACC 249
|| ||||| || ||| | ||||| || |||||||| || |||||||||| |||||| |||
Sbjct 349 TCTGGCTCTGTAGCTAACGTCACTTTACGTCAGCCATCACCGGCAGCTCTTGGCTCTACC 408
Query 250 ATTACTTTCCACGGAAAGTTCGATCTTCTCTCTGTCTCCGCCAC-TTTCCTCCCTCCTCC 308
|| |||||||| |||||||| ||||| ||||| |||||||| || |||| ||||||||||
Sbjct 409 ATAACTTTCCATGGAAAGTTTGATCTCCTCTCCGTCTCCGCAACGTTTC-TCCCTCCTCC 467
Query 309 GCCTCAG-ACTTCCTTGCCCCCTCCC-TTCTCTAATTTCTTCACCGTCTCTCTCGCCGGA 366
||||| | ||||||||| | |||||| || ||||| |||||||||||||||||||| |||
Sbjct 468 GCCTC-GTACTTCCTTGTCTCCTCCCGTT-TCTAACTTCTTCACCGTCTCTCTCGCTGGA 525
Query 367 CCTCAGGGACAAGTCATCGGTGGATTCGTCGCTGGTCCTCTCGTTGCCGCCGGAACTGTT 426
||||| |||||| ||||||| || |||||||||||||| || || | || ||||| |||
Sbjct 526 CCTCAAGGACAAATCATCGGAGGGTTCGTCGCTGGTCCACTTATTTCGGCAGGAACAGTT 585
Query 427 TACGTCGTCGCTACTAGTTTCAATAACCCTGCCTATCACCGGTTACCCGCTGCGGAGGAA 486
|||||| |||| | |||||||| |||||| | |||||||||||||| | ||||| |||
Sbjct 586 TACGTCATCGCCGCAAGTTTCAACAACCCTTCTTATCACCGGTTACC-G--GCGGAAGAA 642
Query 487 GAGCAAAGAA-ACTCAGCGG--A-AGGGGA--G-G-GC--CAATCGCCGCCGGTCTCTGG 536
||||||| || |||| |||| | |||||| | | | ||||| ||||||||||||||
Sbjct 643 GAGCAAA-AACACTCGGCGGGGACAGGGGAAAGAGAGGGACAATCTCCGCCGGTCTCTGG 701
Query 537 AGGTGGTGGAGAGTC 551
|| |||| ||||||
Sbjct 702 TGGCGGTGAAGAGTC 716
Score = 84.2 bits (45), Expect = 2e-15
Identities = 58/64 (91%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 553 ATGTACAGTTGCCACATGGGTGGCTCTGATGTCATTTGGTCTCCCAAC-GCCAAAGCTCC 611
|||||||||||||||||||||||||||||||| |||||| | ||| || |||| ||||||
Sbjct 760 ATGTACAGTTGCCACATGGGTGGCTCTGATGTTATTTGGGC-CCCTACAGCCAGAGCTCC 818
Query 612 ACCG 615
||||
Sbjct 819 ACCG 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5