BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471625
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14510.1 | Symbols: AL7 | alfin-like 7 | chr1:4961886-496442... 1755 0.0
AT2G02470.1 | Symbols: AL6 | alfin-like 6 | chr2:652580-654915 ... 747 0.0
> AT1G14510.1 | Symbols: AL7 | alfin-like 7 | chr1:4961886-4964428
REVERSE LENGTH=1318
Length=1318
Score = 1755 bits (950), Expect = 0.0
Identities = 1055/1103 (96%), Gaps = 17/1103 (2%)
Strand=Plus/Plus
Query 164 TGGTGAGGCTGATTGATTCTCATCTGTG-AAGTCTTTGG--TTTGAAGCAATAATAATAT 220
|||||||||||||| ||||||||||||| |||||||||| |||||||| |||| |||
Sbjct 220 TGGTGAGGCTGATTCATTCTCATCTGTGAAAGTCTTTGGCTTTTGAAGC---AATACTAT 276
Query 221 GGAAGGAATTCAGCATCCTATACCTCGCACTGTCGAAGAGGTCTTTAGCGACTTTCGTGG 280
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 277 GGAAGGAATTCAGCATCCTATACCTCGCACTGTCGAAGAGGTTTTTAGCGACTTTCGTGG 336
Query 281 TCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTGATGGACAGAAGTTTTACCATCAGTG 340
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 337 TCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTGATGTACAGAAGTTTTACCATCAGTG 396
Query 341 TGACCCTGAGAAGGAAAACTTGTGTCTTTATGGACTTCCAAATGAGACATGGGAGGTTAA 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 TGACCCTGAGAAGGAAAACTTGTGTCTTTATGGACTTCCAAATGAGACATGGGAGGTTAA 456
Query 401 TCTTCCCGTTGAGGAGGTCCCTCCTGAGCTTCCTGAACCAGCGTTAGGCATCAATTTCGC 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 TCTTCCCGTTGAGGAGGTCCCTCCTGAGCTTCCTGAACCAGCGTTAGGCATCAATTTCGC 516
Query 461 TAGGGACGGAATGCAAGAAAAAGACTGGATATCTTTGGTTGCAGTTCACAGTGATTCATG 520
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 517 AAGGGACGGAATGCAAGAAAAAGACTGGATTTCTTTGGTTGCAGTTCACAGTGATTCATG 576
Query 521 GCTTATCTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGTAAGAATGAGAGGAA 580
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 577 GCTTATCTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATGAGAGGAA 636
Query 581 GAGGCTCTTCCAGATGATAAATGATCTCCCAACCATTTTCGAGGTTGTAACTGGCAATGC 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GAGGCTCTTCCAGATGATAAATGATCTCCCAACCATTTTCGAGGTTGTAACTGGCAATGC 696
Query 641 AAAGCAATCCAAGGATCAATCTGCTAACCACAACAGTAGCAGAAGCAAATCTGGCGGTGG 700
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 697 AAAGCAATCCAAGGATCAATCTGCTAACCACAACAGTAGCAGAAGCAAATCTAGTGGTGG 756
Query 701 CAAGCCTCGTCATTCTGA-TACTCACACTAAGGCTTCAAAGATGTCCCCACCACCAAGAG 759
|||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||
Sbjct 757 CAAGCCTCGTCATTCTGAAT-CTCACACTAAGGCTTCAAAGATGTCCCCTCCACCAAGAA 815
Query 760 AAGAAGATGAGAGCGGAGATGAGGAGGAAGATGATGAACAAGGTGCTGTTTGTGGCGCGT 819
||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||
Sbjct 816 AAGAAGATGAGAGCGGAGATGAGGATGAAGATGACGAGCAAGGTGCTGTTTGTGGTGCGT 875
Query 820 GTGGAGACAACTATGGAGGAGATGAGTTCTGGATATGTTGTGATGCTTGCGAGAAATGGT 879
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 GTGGCGACAACTATGGAGGAGATGAGTTCTGGATATGTTGTGATGCTTGCGAGAAATGGT 935
Query 880 TCCATGGAAAATGCGTGAAGATCACACCAGCAAAGGCTGAGCACATCAAACATTACAAAT 939
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 936 TCCATGGGAAATGCGTGAAGATCACACCAGCAAAGGCTGAGCATATCAAACATTACAAAT 995
Query 940 GCCCAAGTTGCAGTACCAGCAAGAAAATCAAAGCCTGAAAGTGATAATAACATTAGAGAC 999
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 996 GCCCAAGTTGCACTACCAGCAAGAAAATGAAAGCCTGAAAGTGATAATAACATTAGAGCC 1055
Query 1000 TGTGAAAGAGGGGAACGTTTTCACAGTTGAAGAAAAAGACAGAACAAGAGTTTAGCTGTG 1059
||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1056 TGTGAAAGAGGAAAACGTTTTCACAGTTTAAGAA---GACAGTACAAGAGTTTAGCTGTG 1112
Query 1060 GTAAGAAGAAGAAACAAAAGGCTTCTGATTGCGTAGTTTTAATGGGATTGAGACAGCTTA 1119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 GGAAGAAGAAGAAACAAAAGGCTTCTGATTGCGTAGTTTTAATGGGATTGAGACAGCTTA 1172
Query 1120 CAGTTAGTAATGTCTATTTCTCTCtttttttttttcttttttttttGCTGTTAATGTTAA 1179
||||||||||||||| ||||||| ||| |||| |||||||||| ||||||||||||||
Sbjct 1173 CAGTTAGTAATGTCTCTTTCTCT-TTTCTTTT---CTTTTTTTTT-GCTGTTAATGTTAA 1227
Query 1180 AATGTTATGACTAATTTGTCTTATGTTTCTGAGAAAATTCTCTCTTT-AAGCACTCTCTA 1238
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1228 AATGTTATGACTAATTTGTCTTAAGTTTCTGAGAAAATTCTGTCTTTTAAGCACTCTCTA 1287
Query 1239 GTCTATGTTAAGTGGTTTCTTCT 1261
|||||||| ||||||||||||||
Sbjct 1288 GTCTATGTCAAGTGGTTTCTTCT 1310
> AT2G02470.1 | Symbols: AL6 | alfin-like 6 | chr2:652580-654915
FORWARD LENGTH=1322
Length=1322
Score = 747 bits (404), Expect = 0.0
Identities = 648/761 (85%), Gaps = 35/761 (5%)
Strand=Plus/Plus
Query 219 ATGGAAGGAATTCA-GCATCCTATACCTCGCACTGTCGAAGAGGTCTTTAGCGACTTTC- 276
||||| |||||| | ||||| |||||||| ||||| |||||||||||||||||| |||
Sbjct 258 ATGGAGGGAATT-ACTCATCCAATACCTCGTACTGTTGAAGAGGTCTTTAGCGAC-TTCA 315
Query 277 GTGGTCGTA-GAGCTGGTCTCATCAAGGCTCTCTCTACTG--ATGGACAGAAGTTTTACC 333
| ||||| | |||||||||| || || |||||| ||| || |||| |||||||||||
Sbjct 316 GAGGTCG-ACGAGCTGGTCTTATTAAAGCTCTCACTAATGATATGG--TGAAGTTTTACC 372
Query 334 -ATCAGTGTGACCCTGAGAAGGAAAACTTGTGTCTTTATGGACTTCCAAATGAGACATGG 392
| | |||||| ||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 373 AAAC-GTGTGATCCTGAGAAGGAGAATTTGTGTCTCTATGGACTTCCAAATGAGACATGG 431
Query 393 GAGGTTAATCTTCCCGTTGAGGAGGTCCCTCCTGAGCTTCCTGAACCAGCGTTAGGCATC 452
||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 432 GAGGTTAATCTACCCGTTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCTTTAGGCATC 491
Query 453 AATTTCGCTAGGGACGGAATGCAAGAAAAAGACTGGATATCTTTGGTTGCAGTTCACAGT 512
||||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct 492 AATTTCGCTAGAGACGGAATGCAAGAAAAGGACTGGGTATCTTTGGTCGCAGTTCACAGT 551
Query 513 GATTCATGGCTTATCTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGTAAGAAT 572
||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 552 GATTCATGGCTGCTTTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAAT 611
Query 573 GAGAGGAAGAGGCTCTTCCAGATGATAAATGATCTCCCAACCATTTTCGAGGTTGTAA-C 631
|||||||||||||| ||||||||||| ||||| || |||||||||||||| ||||| | |
Sbjct 612 GAGAGGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAAGTTGTGAGC 671
Query 632 TGGCAATGCAAAGCAATCCAAGGATCAATCTGCTAACCACAACAGTAGCAGAAGCAAATC 691
|||||||||||||| |||||||||| ||||| |||| |||| | ||||| ||||||| |
Sbjct 672 -GGCAATGCAAAGCAGTCCAAGGATCTATCTGTTAACAACAATAATAGCAAAAGCAAACC 730
Query 692 TGGCGGTGGCAAGCCTCGTCATTCTGA-TACTCACACTAAGGCTT-CAAAGATGTC--C- 746
| | || | |||| |||| || || || | ||| | | |||| || |||||||||| |
Sbjct 731 TAGTGGCGTCAAGTCTCGCCAATCCGAAT-CTCTCTCAAAGG-TTGCAAAGATGTCATCT 788
Query 747 CCACCACCAAGAGAAGAAGATGA-GA-GC-G--GAGA-TGA-G--GAG-G--AAGATGAT 794
||||| |||| ||||||||| || || | | |||| ||| | ||| | |||| |||
Sbjct 789 CCACCGCCAAAAGAAGAAGAAGAAGAAGAAGATGAGAGTGAAGATGAGAGTGAAGACGAT 848
Query 795 GAACAAGGTGCTGTTTGTGGCGCGTGTGGAGACAACTATGG-AGGAGATGAGTTCTGGAT 853
||||||||||| |||||||| || |||||||||||||| || | |||||||||||||||
Sbjct 849 GAACAAGGTGCGGTTTGTGGTGCTTGTGGAGACAACTACGGTAC-AGATGAGTTCTGGAT 907
Query 854 ATGTTGTGATGCTTGCGAGAAATGGTTCCATGGAAAATGCGTGAAGATCACACCAGCAAA 913
|| || || || || ||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 908 TTGCTGCGACGCGTGTGAGAAATGGTTCCATGGAAAATGTGTGAAGATAACACCTGCAAA 967
Query 914 GGCTGAGCACATCAAACATTACAAATGCCCAAGTTGCAGTA 954
|| || |||||||| |||||||||||||||| ||||||||
Sbjct 968 AGCAGAACACATCAAGCATTACAAATGCCCAACTTGCAGTA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5