BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471628
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14530.1 | Symbols: THH1 | Protein of unknown function (DUF1... 1616 0.0
AT2G02180.1 | Symbols: TOM3 | tobamovirus multiplication protei... 953 0.0
> AT1G14530.1 | Symbols: THH1 | Protein of unknown function (DUF1084)
| chr1:4970858-4973726 REVERSE LENGTH=1454
Length=1454
Score = 1616 bits (875), Expect = 0.0
Identities = 976/1024 (95%), Gaps = 9/1024 (1%)
Strand=Plus/Plus
Query 1 GAAGGAGAAGGAGAGAGGAGAAGTGATTCGATCGATTCTCTTATCCGTGATCGAAAGCTA 60
|||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct 26 GAAGGAGAAGGAGAGAGGAGAAGTGATTCGATCGATTCTCTTTTTGGTGATCG-AAGCTA 84
Query 61 AATCTATTAGGAATCTGAATC-TTGTATGAGttttttttCCCGGAAATGAGAAGCGGCGG 119
||||||| |||||| |||||| ||||||| | |||||||| ||| ||||||||||||||
Sbjct 85 AATCTATAAGGAATTTGAATCTTTGTATGTG-TTTTTTTCGTGGAGATGAGAAGCGGCGG 143
Query 120 CTTGGAAATGATGTCATCTTCGGCGGCAGCAATCGTAGCGTTTAATTTGAAGGAGGCTAC 179
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 144 CTTGGAAATGATGTCATCTT------CAGCAATCGTAGCGTTTAATTTGAAGGAGGGTAA 197
Query 180 GAATTGGTGGTCGGATGTGAATGAATCTCCGGTGTGGCAGGATCGTATCTTCCATGTTCT 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GAATTGGTGGTGGGATGTGAATGAATCTCCGGTGTGGCAGGATCGTATCTTCCATGTTCT 257
Query 240 TGCTGTTCTATATGGAATCGTTTCCGTCATTGCTGTGATTCAATTGGTAAGAATACAATT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TGCTGTTCTATATGGAATCGTTTCCGTCATTGCTGTGATTCAATTGGTAAGAATACAATT 317
Query 300 GAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCTTTCATTTTCTCAATTTCTTGGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 318 GAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCTTTCATTTTCTCAATTTCATGGT 377
Query 360 GAATGGAGTTCGAGCTCTGGTTTTTGTTTTCCGTCGAGATGTACAGAATATGAAGCCAGA 419
|| ||||||||||||||||||||| | ||||| ||||||| |||||| ||| |||||||
Sbjct 378 TAACGGAGTTCGAGCTCTGGTTTTTCTCTTCCGGCGAGATGCACAGAACATGCAGCCAGA 437
Query 420 GATTCTGCAACATATCTTACTTGACATTCCAAGTCTTGCTTTCTTCACTACATATGCGCT 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 438 GATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGCGCT 497
Query 480 TCTTGTTCTCTTTTGGGCAGAGATTTACTACCAGGCACGTGCTGTATCCACTGATGGACT 539
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 498 TCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGGCACGTGCTGTATCGACTGATGGACT 557
Query 540 GAGGCCAAGTTTCTTCACAATTAATGCAGTTGTTTACGTAATTCAGATTGCTCTTTGGTT 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 558 GAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAGATTGCTCTTTGGTT 617
Query 600 GGTTTTGTGGTGGAAGCCTGTTCACCTTATGGTAATCATTTCTAGGATGTTCTTTGCAGG 659
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 618 GGTTTTGTGGTGGAAGCCTGTTCACCTTATGGTAATCATTTCTAAGATGTTCTTTGCAGG 677
Query 660 TGTCTCATTGTTCGCGGCCCTTGGCTTTTTATTATATGGAGGAAGGCTTTTCCTGATGCT 719
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 TGTCTCATTGTTTGCGGCCCTTGGCTTTTTATTATATGGAGGAAGGCTTTTCCTGATGCT 737
Query 720 GCAACGATTTCCAGTAGAATCTAAAGGGCGGCGCAAGAAGCTGCAAGAGGTTGGCTACGT 779
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 738 GCAACGATTTCCAGTAGAGTCTAAAGGGCGGCGCAAGAAGCTACAAGAGGTTGGCTACGT 797
Query 780 GACATCCATATGCTTTACATGTTTCCTCATCAGATGCATCATGATGTGCTTTGATGCGTT 839
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 798 GACAACCATATGCTTTACATGTTTCCTCATCAGATGTATCATGATGTGCTTTGATGCGTT 857
Query 840 CGATGATGCAGCAGATCTTGATGTCCTAGATCATCCAATCCTAAACTTCATATATTACCT 899
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 858 TGACGATGCAGCAGATCTTGATGTCTTAGATCATCCAATCCTAAACTTCATATATTACTT 917
Query 900 GTTGGTGGAGATATTGCCTTCGTCTCTGGTCCTCTTTATCCTAAGAAAGCTTCCACCAAA 959
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 918 GTTGGTGGAGATATTGCCATCGTCTCTGGTCCTCTTTATCCTAAGAAAGCTTCCGCCAAA 977
Query 960 ACGCGGAATCACACAATACCATCAAATCCAATGAACATGTTCAGAGAATCGAAACACTGA 1019
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 ACGCGGTATCACACAGTACCATCAAATCCAATGAACATGTTCAGAGAATCGAAACACTGA 1037
Query 1020 GGTA 1023
||||
Sbjct 1038 GGTA 1041
> AT2G02180.1 | Symbols: TOM3 | tobamovirus multiplication protein
3 | chr2:560864-563233 FORWARD LENGTH=1296
Length=1296
Score = 953 bits (516), Expect = 0.0
Identities = 739/847 (87%), Gaps = 13/847 (2%)
Strand=Plus/Plus
Query 159 GTTTAATTTGAAGGAGGCTACGAATTGGTGGTCGGATGTGAATGAATCTCCGGTGTGGCA 218
||| ||| | || || ||| ||||||||||||| || || || ||||||||| | |||||
Sbjct 190 GTTGAATCTCAAAGAAGCTTCGAATTGGTGGTCAGACGTAAACGAATCTCCGATTTGGCA 249
Query 219 GGATCGTATCTTCCATGTTCTTGCTGTTCTATATGGAATCGTTTCCGTCATTGCTGTGAT 278
||||||||||||||||||||| |||||||| || |||||||||||| || ||||||||||
Sbjct 250 GGATCGTATCTTCCATGTTCTCGCTGTTCTCTACGGAATCGTTTCCCTCGTTGCTGTGAT 309
Query 279 TCAA-TTGGTAAGAATACAATTGAGAGTTCCAGAATATGGCTGGACGACGCAGAAGGTCT 337
|||| || || |||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 310 TCAACTT-GTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCT 368
Query 338 TTCATTTTCTCAATTTC-TTGGTGAATGGAGTTCGAGCTCTGGTTTTTGTTTTCCGTCGA 396
|||| |||||||||||| || || ||||||||||| ||| |||| ||||| ||| | |||
Sbjct 369 TTCACTTTCTCAATTTCGTT-GTTAATGGAGTTCGTGCTGTGGTGTTTGTCTTCAGGCGA 427
Query 397 GATGTACAGAATATG-AAGCCAGAGATTCTGCAACATATCTTACTTGACATTCCAAGTCT 455
|||| ||| |||| || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 428 AATGTTCAGTTTATGCAA-CCAGAGATTCTGCAACATATCTTGCTTGATATTCCAAGTCT 486
Query 456 TGCTTTCTTCACTACATATGCGCTTCTTGTTCTCTTT-TGGGCAGAGATTTACTACCAGG 514
|||||||||||| || ||||| ||||| ||||| ||| ||||| || ||||| || ||||
Sbjct 487 TGCTTTCTTCACCACCTATGCTCTTCTGGTTCT-TTTCTGGGCTGAAATTTATTATCAGG 545
Query 515 CACGTGCTGTATCCACTGATGGACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTTT 574
| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 546 CGCGTGCAGTATCGACTGATGGACTCAGGCCAAGCTTCTTCACAATTAATGCAGTTGTAT 605
Query 575 ACGTAATTCAGATTGCTCTTTGGTTGGTTTTGTGGTGGAAGCCTGTTC-ACCTTATGGTA 633
| ||| ||||||||||||| |||||||||||||||||||||||||||| | ||||||||
Sbjct 606 ATGTAGTTCAGATTGCTCTATGGTTGGTTTTGTGGTGGAAGCCTGTTCGA-GTTATGGTA 664
Query 634 ATCATTTCTAGGATGTTCTTTGCAGGTGTCTCATTGTTCGCGGCCCTTGGCTTTTTA-TT 692
||| | |||| |||||||||||||||||| ||||||||||| |||||||| |||||| ||
Sbjct 665 ATCCTATCTAAGATGTTCTTTGCAGGTGTTTCATTGTTCGCTGCCCTTGGATTTTTACTT 724
Query 693 ATATGGAGGAAGGCTTTTCCTGATGCTGCAACGATTTCCAGTAGAATCTAAAGGGCGGCG 752
||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 725 -TATGGTGGAAGGCTTTTCCTAATGTTGCAACGGTTTCCAGTAGAATCTAAAGGGCGGCG 783
Query 753 CAAGAAGCTGCAAGAGGTTGGCTACGTGACATCCATATGCTTTACATGTTTCCTCATCAG 812
||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||
Sbjct 784 CAAAAAGCTGCAAGAGGTTGGTTACGTGACAACCATATGCTTTACGTGTTTCCTCATCAG 843
Query 813 ATGCATCATGATGTGCTTTGATGCGTTCGATGATGCAGCAGATCTTGATGTCCTAGATCA 872
||| |||||||||||||||| ||| |||||||| | ||| | |||||||| |||||||
Sbjct 844 ATGTATCATGATGTGCTTTGCTGCTTTCGATGAGGGGGCAAACCTTGATGTGTTAGATCA 903
Query 873 TCCAATCCTAAACTTCATATATTACCTGTTGGTGGAGATATTGCCTTCGTCTCTGGTCCT 932
|| ||||| ||||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct 904 CCCCATCCTTAACTTCATATATTACCTGTTGGTAGAGATATTACCCTCCTCTCTGGTCCT 963
Query 933 CTTTATCCTAAGAAAGCTTCCACCAAAACGCGGAATCACACAATACCATCAAATCCAATG 992
||| ||| | |||||||| ||||||||||| || || |||||||||||||| || | ||
Sbjct 964 CTTCATCTTGAGAAAGCTACCACCAAAACGAGGCATTACACAATACCATCAGATTCGCTG 1023
Query 993 AACATGT 999
|| ||||
Sbjct 1024 AA-ATGT 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5