BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471638
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14600.1 | Symbols: | Homeodomain-like superfamily protein ... 1424 0.0
AT2G02060.1 | Symbols: | Homeodomain-like superfamily protein ... 327 8e-89
> AT1G14600.1 | Symbols: | Homeodomain-like superfamily protein
| chr1:5001011-5003370 REVERSE LENGTH=942
Length=942
Score = 1424 bits (771), Expect = 0.0
Identities = 860/902 (95%), Gaps = 9/902 (1%)
Strand=Plus/Plus
Query 1 ATGGGTAGGTGTGGAAGAAGCAGCGACGGAGGGATTGGTGGGGTTAGACCGTACGTACGA 60
|||||||||||||||||||||| |||||||| |||||||| || ||||| |||||||||
Sbjct 1 ATGGGTAGGTGTGGAAGAAGCAACGACGGAGTAATTGGTGGAGTAAGACCATACGTACGA 60
Query 61 TCTCCAGTGCCTCGTCTTAGATGGACGCCGGAGCTTCACCGGAGTTTCGTCCACGCCGTT 120
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TCTCCGGTGCCTCGTCTGAGATGGACGCCGGAGCTTCACCGGAGTTTCGTTCACGCCGTT 120
Query 121 GATTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTTGTTCTGAAGATAATGGATGTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTTGTTCTGAAGATAATGGATGTC 180
Query 181 AAGGGACTAACCATATCACACGTCAAGAGCCATCTCCAGATGTATAGGGGATCCAGACTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 AAGGGACTAACCATATCACACGTCAAGAGCCATCTCCAGATGTATAGGGGATCCAGAATC 240
Query 241 ACTCTTCTTGGAAAACCAGAAGAGAGTTCTTCACCATCTTC---aagaagaagaagacaa 297
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 ACTCTTCTTGGAAAACCAGAAGAGAGTTCTTCACCATCTTCAAGAAGAAGAAGAAGACAA 300
Query 298 gacaatgaagaagaTCATCTTCATGACAACTTGTCTGTACACGCAAGGAATGATTGTCTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GACAATGAAGAAGATCATCTTCATGACAACTTGTCTGTACACGCAAGGAATGATTGTCTT 360
Query 358 TTGGGTTTTCACTCTTTTAACTTTAGAGAGCAGACTTCAGCGACTGATAATGATGACGAT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGGGTTTTCACTCTTTTAACTTTAGAGAGCAGACTTCAGCGACTGATAATGATGACGAT 420
Query 418 GACTTTCTTAACATCATGAACATGGAGAGAACGAAGACATTTGCAGGCAATGGCGAGTCC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GACTTTCTTAACATCATGAACATGGAGAGAACGAAGACATTTGCAGGCAATGGCGAGTCC 480
Query 478 ATCAAATTTCAGTCTCATCACTTTCTCGAGGCTgaaaacacgaagaacaattggaaaaac 537
|||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||
Sbjct 481 ATCAAATTTCAGTCTCATCACTCTCTCGAGGCTGAGAACACGAAGAACATTTGGAAAAAC 540
Query 538 acatggcgagaaaacgaaaacgaacacgaagaagaaaaaTTATCGCTGTCTCTGTCGTTG 597
|||||||||||||||||| ||||| ||||||||| | |||||||||||||||||||||
Sbjct 541 ACATGGCGAGAAAACGAACACGAA---GAAGAAGAAGAGTTATCGCTGTCTCTGTCGTTG 597
Query 598 AATCATCCTCATAATCATCAACAACGTTGGAGAAGCAATGCATCATCATCACTAAGTGAA 657
|||||||||||||| ||||||||| | |||| ||||||||| ||||||||||| ||||||
Sbjct 598 AATCATCCTCATAACCATCAACAAAGATGGAAAAGCAATGCTTCATCATCACTCAGTGAA 657
Query 658 ACAAGCGAAGCAGTCTCATCTTCTTCTGCTCCATTCATCTTCAGAGATTGTTTTGCTTCT 717
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 658 ACAAGCGAAGCAGTCTCATCTTCTTCTGGTCCATTCATCTTCAGAGATTGTTTTGCTTCT 717
Query 718 TCGAAGATTGATCTTAATCTTAATCTCTCGTTTTCTCTACTCCATAGCTGAAGCTTTTGT 777
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 718 TCGAAGATTGATCTTAATCTTAATCTCTCCTTTTCTCTACTCCATAGCTGAAGCTTT-GT 776
Query 778 TCAGCTTTGTTCCTTTGTTTTAAACTTTAGTGTAGTGACCTTTTAGATTGTTTTAAAACC 837
||||||||||||||||||| |||| ||||| ||||||| | ||||||||||||| |||||
Sbjct 777 TCAGCTTTGTTCCTTTGTTCTAAATTTTAGCGTAGTGAACATTTAGATTGTTTTTAAACC 836
Query 838 AC-TTAAAAATTTCCTAATCTTTTAGTTAGGCCTCTTGATTTTTGATTGTGATGAttttt 896
|| |||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 837 ACCTTAAAAGTT-CCTAATCTTTTAGTTAGGCCTCTTGATTTGTGATTGTGATGTTTTTT 895
Query 897 tt 898
||
Sbjct 896 TT 897
> AT2G02060.1 | Symbols: | Homeodomain-like superfamily protein
| chr2:495570-497747 FORWARD LENGTH=1030
Length=1030
Score = 327 bits (177), Expect = 8e-89
Identities = 289/341 (85%), Gaps = 16/341 (5%)
Strand=Plus/Plus
Query 43 GTTAGACCGTACGTACGATCTCCAGTGCCTCGTCTTAGATGGACGCCGGAGCTTCACCGG 102
|||||||| |||||||| |||||||| || || ||||||||||||||||| ||||||||
Sbjct 182 GTTAGACCTTACGTACGGTCTCCAGTTCCACGGCTTAGATGGACGCCGGATCTTCACCGT 241
Query 103 AGTTTCGTCCACGCCGTTGA-TTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTTGT 161
||||||| |||||||| || || ||||| |||||| | |||||| |||||||||||
Sbjct 242 TGTTTCGTTCACGCCGTCGAGATT-CTCGGTGGTCAACACCGAGCAACACCAAAACTTGT 300
Query 162 TCTGAAGATAATGGATGTCAAGGGACTAACCATATCACACGTCAAGAGCCATCTCCAGAT 221
||| ||||| |||||||| |||||||| ||||| ||||| ||||| ||||| || |||||
Sbjct 301 TCTTAAGATGATGGATGTGAAGGGACTTACCATTTCACATGTCAAAAGCCACCTTCAGAT 360
Query 222 GTATAG-GG-GATCCAGA-CTCACTCTTCTTGGA-AAACCAGAAGAGAGTTCTTCACCAT 277
|||||| || | | || | |||| | | ||||| ||||||||||| || | ||| |||
Sbjct 361 GTATAGAGGAGGTTCAAAGCTCA--C-T-TTGGAGAAACCAGAAGAAAG--C-TCATCAT 413
Query 278 CTTCaagaagaagaagacaagacaatgaagaag---aTCATCTTCATGACAACTTGTCTG 334
|||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 414 CTTCAATAAGAAGAAGACAAGACAGTGAAGAAGATTATTATCTTCATGACAACTTGTCTT 473
Query 335 TACACGCAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTT 375
||||| |||||||||||||||||||||||||||||||||||
Sbjct 474 TACACACAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTT 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43854410331
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5