BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471648
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14685.3 | Symbols: BPC2, BBR/BPC2, ATBPC2 | basic pentacyst... 1736 0.0
AT2G01930.1 | Symbols: BPC1, BBR, ATBPC1 | basic pentacysteine1... 307 2e-82
> AT1G14685.3 | Symbols: BPC2, BBR/BPC2, ATBPC2 | basic pentacysteine
2 | chr1:5042588-5044294 FORWARD LENGTH=1707
Length=1707
Score = 1736 bits (940), Expect = 0.0
Identities = 1079/1142 (94%), Gaps = 26/1142 (2%)
Strand=Plus/Plus
Query 206 TAGATCTTTGAAATGGATGACGATGGGTTTCGCAATTGGGGTTACTATGAACCAGCGGCT 265
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 487 TAGATCTTTGAAATGGATGACGATGGGTTTCGTAATTGGGGTTACTATGAACCAGCTGCT 546
Query 266 GCTACCTTTAAAGGTAATCTCGGTTTGCAGCTTATGTCTACCATTGATCGGAACACTAAA 325
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 547 GCTACCTTTAAAGGTAATCTCGGTTTGCAGCTAATGTCTACCATTGATCGGAACACTAAA 606
Query 326 CCGTTTTTACCTGGCCGTGACCCGAATCTAATGATCGGGCCTAATGGGTCATATCACCAC 385
|||||||||||||| || || |||||||||||||| |||||||| |||||||||||||||
Sbjct 607 CCGTTTTTACCTGGGCGGGATCCGAATCTAATGATGGGGCCTAACGGGTCATATCACCAC 666
Query 386 CAAGAGCCTCCTATCCACATGAGCTACAATTGGATTAACCAACAGAAGGATAAGTTCTTC 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CAAGAGCCTCCTATCCACATGAGCTACAATTGGATTAACCAACAGAAGGATAAGTTCTTC 726
Query 446 AATATGTTGCCTGTTAC-A-A-CCGCTCCTAATTACGGTAATGTCCTTCCCGAAACTTCG 502
||||||||||||||||| | | || ||||||| |||||||||||||||||||||||||||
Sbjct 727 AATATGTTGCCTGTTACAACAGCCACTCCTAACTACGGTAATGTCCTTCCCGAAACTTCG 786
Query 503 TCTGCCCCGTCGATGCAGATGAACCTCCATCATCATCATCAAACCGAGGAGACCCCGGTT 562
||||| ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||
Sbjct 787 TCTGCTCCGTCGATGCAGATGAATCTCCATCATCATCTTCAAACCGAGGAGAATCCGGTT 846
Query 563 AAATTGGAAGAAGAGATTGTTGTTCAGACTAAGAAGAGAAAGACCAATGCAAAAGCTGGC 622
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 AAGTTGGAAGAAGAGATTGTTGTTCAGACTAAGAAGAGAAAGACCAATGCAAAAGCTGGC 906
Query 623 TCCACAGCAAAGGCTAAGAAGCCAAGGAAACCAAAGGATGAGAACAG---caacaacaac 679
|| || |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 907 TCGACTCCAAAGGCTAAGAAGCCAAGGAAACCAAAGGATGAGAACAGTAACAACAACAAC 966
Query 680 aacaacaacaCGAATGTTTCTCGAGTGAAACCGGCTAAGAAAAGTGTCGATTTGGTGATT 739
|||||||||||||||||| ||||||| ||||| |||||||||||||| || ||||||||
Sbjct 967 AACAACAACACGAATGTTACTCGAGTTAAACCCGCTAAGAAAAGTGTTGACTTGGTGATC 1026
Query 740 AATGGAGTGAGTATGGACATTTCGGGTCTTCCTGTCCCGATCTGCACTTGCACTGGAGCT 799
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1027 AATGGAGTGAGTATGGACATTTCGGGTCTTCCTGTTCCTATCTGCACTTGCACTGGAGCT 1086
Query 800 CCTCAGCAATGCTACCGTTGGGGATGTGGCGGTTGGCAGTCTGCGTGTTGTACCACAAAC 859
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1087 CCTCAGCAATGCTACCGTTGGGGATGTGGCGGTTGGCAGTCTGCTTGTTGTACCACAAAC 1146
Query 860 ATCTCGATGCATCCATTGCCAATGAGTACTAAACGCCGTGGAGCGAGGATCTCCGGAAGG 919
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1147 ATCTCAATGCATCCATTACCAATGAGTACTAAACGCCGTGGAGCGAGGATCTCGGGAAGG 1206
Query 920 AAGATGAGTCAAGGCGCGTTTAAGAAGGTTCTTGAGAAACTAGCTTCTGATGGGTTTAAC 979
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1207 AAGATGAGTCAAGGCGCGTTTAAGAAGGTTCTTGAGAAACTTGCTTCTGATGGGTTTAAC 1266
Query 980 TTTGGGAATCCGATTGATCTTAAGAGCCATTGGGCAAGACATGGAACTAACAAGTTCGTC 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 TTTGGGAATCCGATTGATCTTAAGAGCCATTGGGCAAGACATGGAACTAACAAGTTCGTC 1326
Query 1040 ACAATCAGATGATTAGTTGCTTGATTAGTAAAAAAGAAGAAGTGAGTGTTTCTCTTCCGG 1099
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1327 ACAATCAGATGATTAGTTGCTTGATTAGTAAAACAGAACAAGTGAGTGTTTCTCTTCCGG 1386
Query 1100 GATGGAATCTCTCAATGATGGTGTATGTATATATACAACAAATCT----TCTGTGACCTT 1155
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1387 GATGGAATCTCTCAATGATGGTGTATGTATATA--CAACAAATCTGAAATCTGTGACCTT 1444
Query 1156 TTTCAAAA-TTCTGTCTGCAATCTGAGTTCGATTCTGTTTTCAGGTAAAACCATCTTCGT 1214
|| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1445 TT-CAAAAATTCTGTCTGCAATCTGAGTTCGATTCTGTTTTCAGGTAAA-CCATCTTCGT 1502
Query 1215 TGTAGGGTTTGGAAACAGAGTTCTCtgtttttctt-accacttttt---atcatacgtt- 1269
|||||||||||||| |||||||||||||||| ||| |||||||||| |||| || ||
Sbjct 1503 TGTAGGGTTTGGAAGCAGAGTTCTCTGTTTT-CTTTACCACTTTTTTTTATCACACTTTT 1561
Query 1270 gctttgttttttgtttgtttgtCTATCTGTGT--CTGAGGAAGAA-A-G-TGTCTGAGAA 1324
|||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||||
Sbjct 1562 GCTTTGTTTTTTGTTTGTTTGTCTATCTGTGTGTCTGAGGAAGAAGAAGGTGTCTGAGAA 1621
Query 1325 AA 1326
||
Sbjct 1622 AA 1623
> AT2G01930.1 | Symbols: BPC1, BBR, ATBPC1 | basic pentacysteine1
| chr2:427121-428839 REVERSE LENGTH=1237
Length=1237
Score = 307 bits (166), Expect = 2e-82
Identities = 291/351 (83%), Gaps = 10/351 (3%)
Strand=Plus/Plus
Query 704 GTGAAACCGGCTAAGAAAAGTGTCGAT-TTGGTGATTAATGGAGTGAGTATGGACATTTC 762
|||||||||| |||||| ||||| ||| || |||||||| || |||||||||||||||||
Sbjct 653 GTGAAACCGGTTAAGAAGAGTGTTGATCTT-GTGATTAACGGTGTGAGTATGGACATTTC 711
Query 763 GGGTCTT-CCTGTCCCGATCTGCACTTGCACTGGAGCTCCTCAGCAATGCTACCGTTGGG 821
||| || ||||| ||| | || ||||| |||||| ||||||| ||||| ||||||||||
Sbjct 712 TGGT-TTACCTGTACCGGTTTGTACTTGTACTGGAACTCCTCAACAATGTTACCGTTGGG 770
Query 822 GATGTGGCGGTTGGCAGTCTGCGTGTTGTACCACAAACATCTCGATGCATCCATTGCCAA 881
| || ||||| ||||| || || |||||||| || ||||| ||| || ||||||| || |
Sbjct 771 GTTGCGGCGGATGGCAATCCGCTTGTTGTACGACTAACATTTCGGTGTATCCATTACCGA 830
Query 882 TGAGTACTAAACGCCGTGGAGCGAGGATCTCCGGAAGGAAGATGAGTCAAGGCGCGTTTA 941
|||||||||| || || || || ||||| || || |||||||||||||||||||||||||
Sbjct 831 TGAGTACTAAGCGACGCGGTGCAAGGATTTCGGGTAGGAAGATGAGTCAAGGCGCGTTTA 890
Query 942 AGAAGGTTCTTGAGAAACTAGCTTCTGATGGGTT-TAACTTTGGGAATCCGATTGATCTT 1000
|||||||||||||||| || | | || || || || |||||||||| |||||||| ||
Sbjct 891 AGAAGGTTCTTGAGAAGTTATCAACAGAAGG-TTATAGCTTTGGGAATGCGATTGAT-TT 948
Query 1001 -AAGAGC-CATTGGGCAAGACATGGAACTAACAAGTTCGTCACAATCAGAT 1049
||| | |||||||| ||||||||||| || ||||| ||||| |||||||
Sbjct 949 GAAGT-CTCATTGGGCTAGACATGGAACCAATAAGTTTGTCACGATCAGAT 998
Score = 246 bits (133), Expect = 3e-64
Identities = 313/394 (79%), Gaps = 36/394 (9%)
Strand=Plus/Plus
Query 75 ttctctctcctctctcttcccctc-ctc-ttctctttccccaatctctctcaggtttctc 132
|||||| ||||||||||| | || || |||||||| | ||||||||||||||||||||
Sbjct 20 TTCTCTTTCCTCTCTCTT-CTATCTTTCTTTCTCTTT-CTCAATCTCTCTCAGGTTTCTC 77
Query 133 tttcctctctcACCAGAAGGGCaaaaaaaTTCCCTTAAAGAGTCCCCCGTTTTTG-TTTA 191
| |||||||| |||| ||| | |||||||| | |||||||| ||| ||| | |
Sbjct 78 TCTCCTCTCT--CCAGGAGGTC-AAAAAATT-CTTTAAAGAG----CCG-TTTAGACCAA 128
Query 192 ACCCCTCTTCTCATTAGATCTTTGAAATGGATGACGATGGGTTTCGCAATTGGGGTTACT 251
|||| | || | | || ||| | |||||| || ||||| |||||||||||||| ||||
Sbjct 129 ACCCAT-TT-TTA-TA-ATC-AT-CAATGGACGATGATGGATTTCGCAATTGGGGATACT 182
Query 252 ATGAACCAGCGGCTGCTAC--C-TTTAAAGGTAATCTCGGTTTGCAGCTTATGTCTACCA 308
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| |
Sbjct 183 ATGAACCAGCGGCTGCTTCTTCGTTTAAAGGTAATCTCGGTTTGCAGCTTATGTCTACTA 242
Query 309 TTGATCGGAACACTAAACCGTTTTTACCTGGCCGTGACCCGAATCTAATGATCGGGCCTA 368
|||| ||||||||||||||||||||||| || ||||| ||||||| |||||||| |||
Sbjct 243 TTGACCGGAACACTAAACCGTTTTTACCCGGTCGTGAATCGAATCTTATGATCGGTTCTA 302
Query 369 ATGGGTCATATCAC-CACCAAGAGCCTCCTATCCACATGAGCTACAATTGGATTAACCAA 427
| || || |||||| | | | |||| | |||||| ||| | |||||||| |||
Sbjct 303 ACGGTTCGTATCACTCTCGA-GAGCA----AG--ACATGAACTATAGCTGGATTAATCAA 355
Query 428 C-AGAAGGATAA---GTTCTTCAATATGTTGCCT 457
| | ||||| || ||||||||| |||||||||
Sbjct 356 CCA-AAGGACAACAAGTTCTTCAACATGTTGCCT 388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65260708500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5