BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471652
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14687.1 | Symbols: AtHB32, HB32, ZHD14 | homeobox protein 3... 1155 0.0
> AT1G14687.1 | Symbols: AtHB32, HB32, ZHD14 | homeobox protein
32 | chr1:5047803-5048612 FORWARD LENGTH=810
Length=810
Score = 1155 bits (625), Expect = 0.0
Identities = 748/804 (93%), Gaps = 22/804 (3%)
Strand=Plus/Plus
Query 1 CAAAAAGTGGGTTTTTCACATTTATTATGACAACTAATACACACATAAGTACAAAATCTT 60
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1 CAAAAAGTGGGTTTTTCACATTTATTATGACAACTAATAAACACGTAAGTACAAAATCTT 60
Query 61 AAAGCAAGTAAGTAACAATAAtttttactttttttGTAACTCCCAACTCTTTCTGACACa 120
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 61 AAAGCAAGTAAGTAACAATAATTTTTGCTCTTTTTGTAACTCCCAACTCTTTCTGACACA 120
Query 121 aaaaaaCACATCATATCATAACTTAAGTaactcaaaaccaaactcttccaaaacaaaccc 180
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 AAAAAACAC--CATATCATAACTTAAGTAACCCAAAACCAAACTCTTCCAAAACAAACCC 178
Query 181 taaactc--aaa--a--a-tc----aaaatc----tctctctcttctAATTAGAGAGCCA 225
||||| | ||| | | || |||| | |||||||||||||||||||||||||
Sbjct 179 TAAACGCAAAAATCATTACTCAAAAAAAAACAAAGTCTCTCTCTTCTAATTAGAGAGCCA 238
Query 226 AGAAGATGCAGAGTTCTTGTGTCTACAGAGAATGCATGCGCAACCACGCCGCGAAGCTAG 285
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 AGAAGATGCAGAGTACTTGTGTCTACAGAGAATGCATGCGCAACCACGCCGCGAAGCTCG 298
Query 286 GCTCCTACGCTATCGATGGCTGCCGTGAATTCTCTCAATCAGCCACCGGCGATCTCTGCG 345
|||| ||||| ||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 299 GCTCTTACGCCATCGATGGCTGCCGTGAATACTCTCAACCATCCACCGGCGATCTCTGCG 358
Query 346 TCGCCTGTGGTTGCCACCGCAGCTACCACCGTCGCGTCGACGTCATATCTTCTACTCAAG 405
|||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 359 TCGCCTGTGGTTGCCACCGCAGCTACCACCGTCGTATAGACGTCATATCTTCTCCTCAAA 418
Query 406 TCACA-CACACGCGCTTCCCGTTCACGAGCTTGAGGCGCGTGAAGCAGCTGGCGAGGCTG 464
||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 TCA-ATCACACGCGCTTCCCGTTCACGAGCTTAAGGCGCGTGAAGCAGCTGGCGAGGCTG 477
Query 465 AAATGGAAAACTGCTGAAGAAAGAAATgaggaggaggaggaggacacagaggagACTTCG 524
||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 478 AAATGGAAAACGGCTGAGGAAAGAAATGAGGAGGAGGAGGATGACACGGAGGAGACTTCG 537
Query 525 ACGGAAGAGAAGATGACGGTGCAGCGACGGAGGAAGTCAAAGTTCACGGCGGAGCAAAGA 584
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 538 ACGGAAGAGAAGATGACGGTGCAGAGGCGGAGGAAGTCAAAGTTCACGGCGGAGCAGAGA 597
Query 585 GAGGCGATGAAAGAATACGCGGCGAAGTTGGGATGGACGTTGAAGGATAAGAGAGCGCTT 644
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAGGCGATGAAAGATTACGCGGCGAAGTTGGGATGGACGTTGAAGGATAAGAGAGCGCTT 657
Query 645 AGAGAAGAGATAAGAGTCTTCTGCGAAGGGATTGGTGTTTCTCGTTATCTTTTTAAAACT 704
||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||
Sbjct 658 AGAGAAGAGATAAGAGTCTTCTGTGAAGGGATTGGTGTTACTCGTTATCATTTTAAAACT 717
Query 705 TGGGTTAACAATAATAAAAAGTTTTATCACTAACTTAGTATTAATTAATTTCCTTAATTG 764
||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||
Sbjct 718 TGGGTTAACAATAATAAAAAGTTTTATCACTAACT-A--ATTAACTAATATCCTTAATTG 774
Query 765 AGATAGTACTATAATTTAGTTCCA 788
||||| ||||||||||||||||||
Sbjct 775 AGATAATACTATAATTTAGTTCCA 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5