BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471656
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14700.1 | Symbols: PAP3, ATPAP3 | purple acid phosphatase 3... 1727 0.0
AT2G01890.1 | Symbols: PAP8, ATPAP8 | purple acid phosphatase 8... 610 1e-173
> AT1G14700.1 | Symbols: PAP3, ATPAP3 | purple acid phosphatase
3 | chr1:5058680-5061136 FORWARD LENGTH=1249
Length=1249
Score = 1727 bits (935), Expect = 0.0
Identities = 1144/1239 (92%), Gaps = 38/1239 (3%)
Strand=Plus/Plus
Query 1 CACAACAAAATTAACCATTCCTTTCCTTATCTTCTTCCTCTTTTGCTTTTCATTTTTCTA 60
||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 30 CACAACAAAATCAACCATTCCTTTCCTTATCTTCTTCCTCTTTTG-----C--TTTTCTA 82
Query 61 ATCTCTCAATGGCTGCCTTAAAACATAAACCTGTAAATTTAATATTTTACGTTTATAATT 120
|||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 83 ATCTCTCAATGGCTACCTTAAAACACAAACCTGTAAATTTGGTATTTTACGTTTATAATT 142
Query 121 TGATTATTATATTCTCCACCCATAGTTCCACGGCGGAGCTCCGCAGGCTACTGCAGCCGG 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 143 TGATTATTATATTCTCCTCCCATAGTTCCACGGCGGAGCTCCGCAGGCTACTGCAGCCAT 202
Query 181 C-GAAACCTGATGGTACAGTAAGCTTTCTCGTCATCGGAGACTGGGGAAGAAGAGGCTCC 239
| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 203 CAAAAACC-GATGGTACAGTGAGCTTTCTCGTTATCGGAGACTGGGGAAGAAGAGGCTCC 261
Query 240 TATAACCAGTCCCAAGTAGCTCTTCAGATGGGAGAAATCGGAGAGAAATTAGACATCGAT 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 262 TATAATCAGTCCCAAGTAGCTCTTCAGATGGGAGAAATCGGAGAGAAATTAGATATCGAT 321
Query 300 TTTGTAATTTCTACTGGAGATAATTTTTACGACAATGGGTTAGCCAGCTTGCACGATCCT 359
||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 322 TTTGTGATTTCTACTGGAGATAATTTTTACGACAATGGTTTAACCAGCTTGCACGATCCT 381
Query 360 CTATTTCAAGATTCTTTTATCAACATTTATACCACTCCGAGCTTGCAGAAACCTTGGTAT 419
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 382 CTATTTCAAGATTCTTTTACCAACATTTATACCGCTCCGAGCTTGCAGAAACCTTGGTAT 441
Query 420 AGTGTTTTAGGAAATCATGATTATAGAGGTGATGTCAGGGTACAACTTAGCCCTATGCTC 479
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 442 AGTGTTTTAGGAAATCATGATTATAGAGGTGACGTCAGGGCACAACTTAGCCCTATGCTC 501
Query 480 AGGGCTTTGGACAACAGATGGGTTTGCATGAGATCTTTCATTGTAAATGCTGAGATCGTC 539
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 AGAGCTCTGGACAACAGATGGGTTTGCATGAGATCTTTCATTGTAAATGCTGAGATCGTC 561
Query 540 GATTTTTTGTTCGTGGACACAACTCCATTCGTTGATAAATACTTTATCCAACCAAATGAG 599
||||| || ||||| ||||||||||| ||||| |||||||||||||| ||||||||| ||
Sbjct 562 GATTTGTTCTTCGTCGACACAACTCCGTTCGTCGATAAATACTTTATTCAACCAAATAAG 621
Query 600 CATGTTTATGACTGGAGCGGCGTATTACCTAGGCAGACATATCTGAACAATCTCTTAAAG 659
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 622 CATGTTTATGACTGGAGCGGTGTATTACCTAGGCAAACATATCTGAATAATCTCTTAAAG 681
Query 660 GAAGTCGACGTGGCATTGAGAGAGTCACTTGCAAAGTGGAAAATAGTGATTGGTCACCAT 719
||| |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 682 GAACTCGACGTGGCGTTGAGAGAGTCAGTCGCAAAGTGGAAAATAGTGATTGGTCACCAT 741
Query 720 ACGATTAAAAGCGCAGGCCACCACGGGAACACCATTGAGTTGGAGAAGCACCTTTTACCT 779
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 742 ACGATCAAAAGCGCAGGCCACCACGGGAACACCATTGAGTTGGAGAAACACCTTTTACCT 801
Query 780 ATTCTCCAAGCAAATGAAGTGGATCTCTACGTAAACGGGCATGATCATTGCTTGGAGCAC 839
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 802 ATTCTCCAAGCAAATGAAGTGGATCTCTACGTAAACGGACATGATCATTGCTTAGAGCAC 861
Query 840 ATAAGCAGCGTGGACAGTAACATTCAATTTATGACGAGTGGAGGTGGATCCAAGGCGTGG 899
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 862 ATAAGCAGCGTGGACAGTAACATACAATTTATGACAAGTGGAGGTGGATCCAAGGCCTGG 921
Query 900 AAAGGAGGTGACGTGGACTAC-TTGGAACCACAAGATCAGATGAAGTTTTACTACGACGG 958
||||||||||||||| ||||| ||| ||||| |||| ||||| |||||||||||||||
Sbjct 922 AAAGGAGGTGACGTGAACTACGTTG-AACCAGAAGA---GATGAGGTTTTACTACGACGG 977
Query 959 ACAAGGATTT-ATGTCGGTTCACGTTTCAGAAGCTGAACTGCGTGTAGTCTTTTATGATG 1017
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 ACAAGG-TTTCATGTCGGTTCACGTTTCAGAAGCTGAACTGCGTGTAGTCTTTTATGATG 1036
Query 1018 TTTTTGGGCACGTTTTGCATCATTGGAAGA---CTTACAAGGAGGCGCTTTATTTCGCTT 1074
||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1037 TTTTTGGACACGTTCTGCATCATTGGAAGAAGACTTACAAGGAGGCGCTTTATTTCGCTT 1096
Query 1075 CTTGATTCCAATTTAATCGGACGTAATTGTT-ATTA--G--G-AC-AT-AATTTATGAAT 1126
||||||||||||||||||||||||||||||| || | | | || || || |||| |||
Sbjct 1097 CTTGATTCCAATTTAATCGGACGTAATTGTTTATGATCGATGTACTATGAAATTATCAAT 1156
Query 1127 ATATT-CTTTCGTTGAATTTTGGAATCACATAATGAATTTATGATATGACAAGAACGTAT 1185
|| | ||| ||| ||||||| ||||||||| | | | |||||||||||||| |||
Sbjct 1157 ATCGTACTT-CGTCGAATTTTCGAATCACAT--T-A-T----GATATGACAAGAACATAT 1207
Query 1186 CAGCAGCATCAGAAAACAA-GTCAATGAAATCTTTATTG 1223
|||||||||||||||| || |||||||||||||||||||
Sbjct 1208 CAGCAGCATCAGAAAAAAAAGTCAATGAAATCTTTATTG 1246
> AT2G01890.1 | Symbols: PAP8, ATPAP8 | purple acid phosphatase
8 | chr2:396768-399208 REVERSE LENGTH=1265
Length=1265
Score = 610 bits (330), Expect = 1e-173
Identities = 738/932 (79%), Gaps = 40/932 (4%)
Strand=Plus/Plus
Query 124 TTATTATATTCTCCACCCATAGTTCCACGGCGGAGCT-CCGCAGGCTAC-TGCAGCCGGC 181
|||||||| | ||| || || ||| ||||| ||||| |||| || | | | || || |
Sbjct 99 TTATTATACTATCCGCCTGTAATTCAACGGCAGAGCTACCGC-GG-TTCGTCCAACC-AC 155
Query 182 GA-AACCTGATGGTACAGTAAGCTTTCTCGTCATCGGAGACTGGGGAAGAAGAGGCTCCT 240
| |||| |||||| || | || |||||||| |||| ||||||||||||||||| || |
Sbjct 156 CAGAACCCGATGGTTCACTCAGTTTTCTCGTTGTCGGCGACTGGGGAAGAAGAGGTTCTT 215
Query 241 ATAACCAGTCCCAAGTAGCTCTTCAGATGGGAGAAAT-CGGAGAGAAATTAGACATCGAT 299
|||| ||||||||||||||||||||||||||| |||| ||| || | ||| | || |||
Sbjct 216 ATAATCAGTCCCAAGTAGCTCTTCAGATGGGAAAAATAGGGA-AGGACTTAAATATTGAT 274
Query 300 TTTGTAATTTCTACTGGAGATAATTTTTACGACAATGGGTTAGCCAGCTTGC--ACGATC 357
|| | ||||| ||||||||||| ||||| || |||| || ||| | | | |||
Sbjct 275 TTCCTCATTTCGACTGGAGATAACTTTTATGATGATGGAATAATCAG--TCCATATGATT 332
Query 358 CTCTATTTCAAGATTCTTTTATCAACATTTATACCA-CTCCGAGCTTGCAGAAACCTTGG 416
||| |||||||||||| |||| ||| ||||| | || | | ||||| || ||||| |||
Sbjct 333 CTCAATTTCAAGATTCGTTTACCAATATTTACA-CAGCAACTAGCTTACAAAAACCATGG 391
Query 417 TATAGTGTTTTAGGAAATCATGATTATAGAGGTGATGTC-AGGGTACAACTTAGCCCTAT 475
|| | ||| |||||||||||||||||||||||| | ||| | | ||||| ||||| ||
Sbjct 392 TACAATGTATTAGGAAATCATGATTATAGAGGTAACGTCTA-TGCGCAACTCAGCCCCAT 450
Query 476 GCTCAGGGCTTTGGACAACAGATGGGTTTGCATGAGATCTT-TCATTGTAAATGCTGAGA 534
||||||| ||||||| | | ||| |||| | ||||||| | |||| || || ||||
Sbjct 451 ACTCAGGGATTTGGACTGCCGTTGGATTTGTTTAAGATCTTAT-GTTGTTAACGCCGAGA 509
Query 535 TCGTCGATTTTTTGTTCGTGGACACAACTCCATTCGTTGATAAATACTTT-ATCCAACCA 593
| |||||| |||| |||||||| ||||| || ||||| |||| ||| ||| || |||||
Sbjct 510 TTGTCGATATTTTCTTCGTGGATACAACACCGTTCGTAGATAGATATTTTGAT-GAACCA 568
Query 594 AATGAGCATGTTTATGACTGGAGCGGCGTATTACCTAGGCAGACATATCTGAACAATCTC 653
|| || ||||| ||||| ||||| ||||||||||| || | | ||| || |||| ||||
Sbjct 569 AAGGACCATGTATATGATTGGAGAGGCGTATTACCGAGAAATAAATACCTTAACAGTCTC 628
Query 654 TTAAAGGAAGTCGACGTGGCATTG-AGAGAGTCACTTGC-AAAGTGGAAAATAGTGATTG 711
|||| ||| || || ||||||||| | ||| ||| | || ||| |||||||||||| | |
Sbjct 629 TTAACGGATGTGGATGTGGCATTGCA-AGAATCAATGGCTAAA-TGGAAAATAGTGGTAG 686
Query 712 GTCACCATACGATTAAAAGCGCAGGCCACCACGGGAACACCATTGAG-TTGGAGAAGCAC 770
| || || ||||| ||||| ||||| |||||||| || ||||| ||| || ||||| ||
Sbjct 687 GCCATCACACGATCAAAAGTGCAGGTCACCACGGAAATACCATAGAGCTT-GAGAAACAA 745
Query 771 CTTTTACCTATTCTCCAAGCAAATGAAGTGGATCTCTACGTAAACGGGCATGATCATTGC 830
||||||||||| ||| | || ||||||||||||||||| ||||||||||||||||||||
Sbjct 746 CTTTTACCTATCCTCGAGGCTAATGAAGTGGATCTCTATATAAACGGGCATGATCATTGC 805
Query 831 TTGGAGCACATAAGCAGCGTGGACAGTA-ACATTCAATTTATGACGAGTGGAGGTGGATC 889
|||||||||||||||||| | ||||| | || ||||||||||| ||||||||||| ||
Sbjct 806 TTGGAGCACATAAGCAGCATCAACAGTGGA-ATACAATTTATGACAAGTGGAGGTGGCTC 864
Query 890 CAAGGCGTGGAAAGGAGGTGACGTGGACT-ACTTGGAACC-ACAAGATCAGATGAAGTTT 947
||||||||||||||||| || || | | | |||||||| |||||| ||||| ||||
Sbjct 865 CAAGGCGTGGAAAGGAGATG---TGAA-TGA-TTGGAACCCACAAGA---GATGAGGTTT 916
Query 948 TACTACGACGGACAAGGATTTATGTCGGTTCACGTTTCAGAAGCTGAACTGCGTGTAGTC 1007
||||| || ||||||||||| ||||||||| || || ||||||||||| || || ||
Sbjct 917 TACTATGATGGACAAGGATTCATGTCGGTTTACACATCCGAAGCTGAACTACGCGTCGT- 975
Query 1008 TTT-TATGATGTTTTTGGGCACGTTTTGCATC 1038
||| ||||||| | |||| |||||||||||||
Sbjct 976 TTTCTATGATGGTCTTGGTCACGTTTTGCATC 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60090052365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5