BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471658
Length=2394
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14710.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 2684 0.0
> AT1G14710.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:5061866-5065178 REVERSE LENGTH=2429
Length=2429
Score = 2684 bits (1453), Expect = 0.0
Identities = 1863/2044 (91%), Gaps = 95/2044 (5%)
Strand=Plus/Plus
Query 1 TTTACACACAAAC-CTCTTTCCTCAAAAACCCTAGA--tct--ctctc-c-ctctctctc 53
||||||||| | | |||||||||||||||||||||| ||| ||||| | |||||||||
Sbjct 9 TTTACACAC-ACCTCTCTTTCCTCAAAAACCCTAGATCTCTCCCTCTCTCTCTCTCTCTC 67
Query 54 tct--atctctTGTCTTTTGCCTTTTACGAAG-----CTTCCCTTAGTTTATACATTACT 106
||| |||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 68 TCTCCATCTCTTGTC-TTTGCCTTTTACGAAGCTTCCCTTCCCTTAGTTTATACATTACT 126
Query 107 CTCAGCTTTCTTTTATTT-ACACAGCTTCACGTTGAAGACGAGTTTCTCTATTTGCCAGA 165
||||||| || ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 127 CTCAGCTCTC-TTTATTTCACTCAGCTTCACGTTGAAGACGAGTTTCTCTATTTGCCAGA 185
Query 166 TCTGTTTGTCTTTCACATTTCTGATCTGTTTGAAGGAAGCTATGA--TG-ACTTG-T--- 218
|||| || ||||||||||||||||||||||||||| ||||||||| || ||| |
Sbjct 186 TCTG-TTATCTTTCACATTTCTGATCTGTTTGAAGAAAGCTATGACTTGTGTTTGATAAA 244
Query 219 --G-TTTG-aaaaaaaGGAACAGTTTTTATCTAAAGATACTTGCTTT-TTTGGTTTGTTC 273
| | ||||||||||||||||||||| |||||||| ||||||| ||| ||||||||
Sbjct 245 GAGAGAAGCAAAAAAAGGAACAGTTTTTATATAAAGATATTTGCTTTATTT-GTTTGTTC 303
Query 274 TTGATTGTTGCCACGAAAATGGCAATG---CCACCGGGAAATGTTACTACTCCGTCTGAG 330
|| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 304 TTAATTGTTGCCACGAAAATGGCAATGCCACCACCTGGAAATGTTACTACTCCGTCTGAG 363
Query 331 AAATTGCAGTTTCCTCCTCCTCCTGCTAATTGGATCCCAGACGAGCGAGATGGGTTTATC 390
||||||||| || ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 364 AAATTGCAG-TT--TCCTCCTCCGGCAAATTGGATCCCAGACGAGCGAGATGGGTTTATC 420
Query 391 TCGTGGCTGCGTGCGGAGTTTGCTGCGGCTAATGCGATCATCGATTCGCTATGTCAACAT 450
|| ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| |||
Sbjct 421 TCCTGGCTTCGTGCGGAGTTCGCTGCGGCTAACGCGATCATCGATTCGCTTTGTCAGCAT 480
Query 451 CTACAAGCAATTGGGGATCACAACGAATACGAGTCTGTGATCGGAAGCATCCATCACCGT 510
|||||||| |||||||||||||||| ||||| || |||||||||||||| ||||| |||
Sbjct 481 CTACAAGCGGTTGGGGATCACAACGAGTACGAATCCGTGATCGGAAGCATTCATCATCGT 540
Query 511 CGTTTAGGCTGGTCTCAAGTTCTTACTATGCAGCAGTTTTTCCCAGTTGCAGATGTTTCT 570
|| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGCTTAGCCTGGTCTCAAGTGCTTACTATGCAGCAGTTTTTCCCAGTTGCAGATGTTTCT 600
Query 571 TACAATCTTCAGCAGATTGCTTGGAAAAGGCAACAGCAAATGCCACCTCAAAGGCATTAC 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TACAATCTTCAGCAGATTGCTTGGAAAAGGCAACAGCAAATGCCACCTCAAAGGCATTAC 660
Query 631 AATTCTGATCAAGTTGGGAAATTTGGAGGAAGGAGATCAGGGCCTGGGTTTAACAAGCAT 690
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 661 AATTCTGATCAAGTTGGGAAATTTGGAGCAAGGAGATCAGGGCCTGGGTTTAACAAGCAT 720
Query 691 CA---TGGTGGT---GGTTACAGAGGAGCTGATTCAATGGCGAGAAATGGGCATAACTCC 744
|| ||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 721 CATGGTGGTGGTGGGGGTTACAGAGGAGCTGATTCGATGGCGAGAAATGGGCATAA-T-- 777
Query 745 TACACGAATTCGGATTTCCATAGTGTTAGCAGTGATCGTGTTGAGCGTCGGGAGGAAGCT 804
| | || | || | |||| ||||||||||||||||| |||||||||||||
Sbjct 778 T--TC-AA-T-GG-----C-----GTTAACAGTGATCGTGTTGAGCATCGGGAGGAAGCT 822
Query 805 AAGCTAGCAAGTGATGTTAAGGCATTGTCTGTTGCAGAAGAGAAGAGAGAGGGTAGTGAG 864
||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 823 AAGTTGGCAAGTGATGTTAAGGCATTGTCTGTTGCAGAAGAGAAGAGAGATGGTAGCGAG 882
Query 865 AAACCGAAGAGTGATAGTAAAGTCGGGAAAAAATTGGAAAAATCTGAAACTCAAGAGGAG 924
||||||| ||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 883 AAACCGAGGAGTGATAGTAAAGTTGAGAAAAAATTGGAAGAATCTGAAACTCAAGAGGAG 942
Query 925 ATAGT---GAACCATAAGTGTAACTCGGCTTCTAAAGATAACAGTCTCAGTTCTGAGCAA 981
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 943 ATAGTGAAGAACCATAAGTGTAACTCGGGTTCTAAAGATAACAGTCTCATTTCTGAGCAA 1002
Query 982 AAGGAGGAGGGGAAAGATAAAGAGTGTCCTGCAAGCATGGCAAAGACTTTTGTGGTCCAA 1041
||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1003 AAGCAGGAGGAGAACGATAAAGAGTGTCCTGCAAGCATGGCAAAGACTTTTGTGGTTCAA 1062
Query 1042 GAGATGTATGACGCGGAAATGGTTAATGTTGTCGAAGGATTGAAGCTATACGACAAAATG 1101
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 GAGATGTATGATGCAAAAATGGTTAATGTTGTCGAAGGATTGAAGCTATACGACAAAATG 1122
Query 1102 CTTGACGCAAAGGAAGTTTCTCAACTCGTTTCTCTTGTAAACAATCTGAGACTTGCTGGA 1161
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1123 CTTGACGCAAACGAAGTTTCTCAACTCGTTTCTCTTGTAACCAATCTGAGACTTGCTGGA 1182
Query 1162 AGAAGAGATCAACTTCAAAGT---GCATATGTGGGTTATAAACGGCCAAATAGAGGACAC 1218
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1183 AGAAGAGGTCAACTTCAAAGTGAGGCATATGTGGGTTATAAACGGCCAAATAGAGGACAT 1242
Query 1219 GGACGCGAGATGATCCAACTCGGTCTTCCCATAGCTGATACGCCGCCTGATGATGATA-- 1276
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1243 GGACGTGAGATGATCCAACTCGGTCTTCCTATAGCTGATACGCCGCCTGATGATGATAGT 1302
Query 1277 AT-----A--GAAGAATAGAGCCAATCCCATCAGCTCTTTCAAACATCATTGAACGTTTG 1329
|| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1303 ATCAAAGATCGAAGAATAGAGCCAATCCCATCAGCTCTTTCAGACATCATTGAACGTTTG 1362
Query 1330 GTCTCAAAGCAAATCATACCTGTGAAACCAGACGCTTGCATCATTGATTTCTTCAATGAG 1389
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1363 GTCTCAAAGCAAATCATACCTGTGAAACCAGACGCATGCATCATTGATTTCTTCAGCGAG 1422
Query 1390 GGAGATCACTCGCAGCCTCATATGTTTGTTCCCTGGTTTGGACGACCCATCAGTGTCTTG 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 GGAGATCACTCGCAGCCTCATATGTTTGTTCCCTGGTTTGGACGACCCATCAGTGTCTTG 1482
Query 1450 TCCTTGTCTGAATGCGATTATACATTCGGAAGAGTCATTGTCTCTGACAATCCCGGCGAC 1509
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1483 TCCTTGTCTGAATGTGATTATACATTTGGAAGAGTCATTGTCTCTGAAAATCCCGGCGAC 1542
Query 1510 TACAAAGGCTCTCTCAAGCTGTCTCTCACTCCCGGATCGGTTCTTTTGGTGGAAGGCAAA 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 TACAAAGGCTCTCTCAAGCTGTCTCTCACTCCCGGATCGGTTCTTTTGGTGGAAGGCAAA 1602
Query 1570 TCCGCAAATCTTGCTAAGTATGCAATTCACTCAACCCGAAAGCAACGGATACTCATCAGC 1629
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1603 TCCGCAAATCTTGCTAAGTATGCAATTCACGCAACCCGAAAGCAACGGATACTCATTAGC 1662
Query 1630 TTCATCAAATCTAAACCGAGAAACTCCATAACCGGATCTAACTGGGGACCACCGCCTAGC 1689
|||||||||||||||||||||||||| |||| | ||||||||||||| |||
Sbjct 1663 TTCATCAAATCTAAACCGAGAAACTC--TAAC----T------GGGGACCACCGCCGAGC 1710
Query 1690 AGATCGCCAAATCA-CT--TCCGTCACCCAACTGGCCCACCTAAACACTACCCTGTT--- 1743
|||||||||||||| | ||||||||||||| ||||||||||||||||||||||||
Sbjct 1711 AGATCGCCAAATCAGCACATCCGTCACCCAACCGGCCCACCTAAACACTACCCTGTTGTT 1770
Query 1744 ATCCCGTCCACCGGTGTCTTGCCCACCCCGTCTCACCGCCCACCAAACGGAGCTGCTCAG 1803
||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1771 ATCCCGTCCACTGGTGTCTTGCCCACTCCGTCTCACCGCCCACCAAACGGAGCTGTTCAA 1830
Query 1804 CCGATTTTCATCCCCCCTTCTCCTCCACTTGCCGCTCCAATGCCGTTCCCAGGTGGTGTA 1863
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1831 CCGATTTTCATCCCTCCTTCTCCTCCACTTGCCTCTCCAATGCCGTTCCCAGGTGGTGTA 1890
Query 1864 CCAACCGGGCCAACGGTCTGGCCACTACTGCCACCTCATCCACGACACCAGCCTCCACCA 1923
||||||||||| | ||||||||||| |||||||||||||||||||||||| | |||||
Sbjct 1891 CCAACCGGGCCGCCTGTCTGGCCACTGCTGCCACCTCATCCACGACACCAGACAGCACCA 1950
Query 1924 CAACCTCGAATGCCCATCCCAGGCACTGGTGTGTTCCTCCCACCCGGTTCAAACCAAGAA 1983
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1951 CAACCTCGAATGCCCATCCCAGGCACTGGTGTGTTCCTCCCACCCGGTTCAAATCAAGAA 2010
Query 1984 CTGG 1987
||||
Sbjct 2011 CTGG 2014
Score = 398 bits (215), Expect = 2e-109
Identities = 263/285 (92%), Gaps = 7/285 (2%)
Strand=Plus/Plus
Query 2042 CAGAAGGAAAGTTAGATGTGAAAACAAAAGAAGAAGCTCGTAACGGAATTGCTGGAGGGG 2101
|||||||||| |||||| |||| | ||||||||||||||||||||| ||| || |||||
Sbjct 2033 CAGAAGGAAAATTAGATTTGAAGGCGAAAGAAGAAGCTCGTAACGGATTTGGTGAAGGGG 2092
Query 2102 AATGCGATGGCAGCAACGGGAAACAGAGCAATTAGTATCTGAAGAAGAGAAGATAGAGCA 2161
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2093 AATGCGATGGCAGTAACGGTAAACAGAGCAATTAGTAGCTGAAGAAGAGAAGATAGAGCA 2152
Query 2162 AAGAGAGA-AACTAGTTTTTGGGAGATGAAATCTGAGGTGCAGTTTATAAACTGTAAAAA 2220
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 2153 AAGAGAGAGAA-TAGTTTTTGGGAGATGAAATCTGAGGTGCAGTTTACAAACTGTTAAAA 2211
Query 2221 GAGCGGCCAATTCGATGGAAATGTCGTTT-GTTTTTGCCACTTGAGAAATTATTTTTAGG 2279
|||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2212 GAGCGGTGAATTCGATG-AAATGTCGTTTTGTTTTTGCCACTTGAGAAATTATTTTTAGG 2270
Query 2280 AGAGAGTCAAAAACAAGGAAAAGTTACCCGTTTTCTACTCTCTTC 2324
|||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 2271 AGAG--TCAAAA-CAAGGAAAAGTTACCCGTTTTCTACTCTCTTC 2312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118874890560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5