BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471659
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14720.1 | Symbols: XTR2, EXGT-A2, ATXTH28, XTH28 | xylogluc... 1779 0.0
AT2G01850.1 | Symbols: EXGT-A3, XTH27, ATXTH27 | endoxyloglucan... 652 0.0
> AT1G14720.1 | Symbols: XTR2, EXGT-A2, ATXTH28, XTH28 | xyloglucan
endotransglucosylase/hydrolase 28 | chr1:5066636-5068645
REVERSE LENGTH=1348
Length=1348
Score = 1779 bits (963), Expect = 0.0
Identities = 1115/1188 (94%), Gaps = 12/1188 (1%)
Strand=Plus/Plus
Query 18 ctctctctctctTTCAACACAGCTCCAAAGCTCGTCCTCAAGACGCTATTTATCCATTTA 77
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 54 CTCTCTCTCTCTTTCAATACAGCTCCAAAACTCGTCCTCAAGACGCTATTTATCCATTTA 113
Query 78 AATCTCTTCTCTTTTCGTCCTCATAATA--C-TATACACAGAAACG-TTTACACTCATAA 133
| |||||||||||||||||||||||||| | |||||||||||||| ||| || ||||||
Sbjct 114 AGTCTCTTCTCTTTTCGTCCTCATAATACTCTTATACACAGAAACGTTTTTCATTCATAA 173
Query 134 C-AAAAATGGGTTTTATAACTCGATTTTTAGTTTTCATGTCACTCTTCACCGGTTTGGTT 192
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 174 CAAAAAATGGGTTTTATAACTCGATTTTTAGTTTTCATGTCACTCTTCACCAGTTTGGTT 233
Query 193 TCTGGATTTGCTCTACAAAAGCTTCCTTTTATACAGTTCGACGAAGGTTACACACATCTC 252
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 234 TCTGGATTTGCTCTACAAAAGCTTCCTCTTATACAGTTCGACGAAGGTTACACACAGCTC 293
Query 253 TTTGGTGACCAAAATCTGATTGTTCACAGAGATGGAAAATCTGTCCGGTTAACGCTCGAT 312
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 294 TTTGGTGACCAGAATCTTATTGTTCACAGAGATGGAAAATCTGTCCGGTTAACGCTTGAT 353
Query 313 GAGAGAACCGGTTCTGGATTTGTCTCAAATGACATTTACTTGCATGGCTTCTTCAGTTCT 372
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 354 GAAAGAACCGGTTCTGGATTTGTCTCAAATGATATTTACTTGCATGGCTTCTTCAGTTCC 413
Query 373 TCTATCAAATTACCAGCAGATTACTCTGCAGGAGTTGTTATCGCCTTTTATCTATCAAAT 432
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 414 TCTATCAAATTGCCAGCAGATTACTCTGCAGGAGTTGTTATCGCCTTTTATTTATCAAAT 473
Query 433 GGAGACTTGTATGAGAAGAATCATGATGAGATAGATTTTGAGTTTTTGGGGAATATTAGA 492
|| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 474 GGGGACTTATATGAGAAGAATCATGACGAGATTGATTTTGAGTTTTTGGGGAATATTAGA 533
Query 493 GGCAAAGAATGGAGGATTCAGACGAACATATACGGAAATGGAAGCACACATTTGGGCAGA 552
|||| |||||||||||||||||| || |||||||| |||||||||||||| |||||||||
Sbjct 534 GGCAGAGAATGGAGGATTCAGACCAATATATACGGTAATGGAAGCACACACTTGGGCAGA 593
Query 553 GAAGAAAGATATAATCTTTGGTTTGATCCAACAGAGGATTTTCATCAATACAGTATCCTC 612
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 594 GAAGAAAGATACAATCTTTGGTTTGATCCAACAGAGGATTTCCATCAATACAGTATCCTT 653
Query 613 TGGTCTCTTTCTCACATCATATTTTGTGTAGACAATGTTCCGATCAGGGAAGTCAAACGC 672
|||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 654 TGGTCTCTATCTCACATCATATTTTATGTAGACAATGTTCCGATCAGAGAAGTCAAACGT 713
Query 673 ACGGCGGCAATGGGCGGTGACTTCCCGGCGAAGCCAATGTCTTTATACGCAACCATATGG 732
|||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 714 ACGGCGTCGATGGGCGGTGACTTCCCGGCGAAGCCAATGTCTTTATATTCAACCATATGG 773
Query 733 GATGGCTCCAAATGGGCGACTGATGGAGGCAAGTACGGTGTAAATTACAAATATGCCCCT 792
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GATGGTTCCAAATGGGCGACTGATGGAGGCAAGTACGGTGTAAATTACAAATATGCCCCT 833
Query 793 TACGTCGCTCAATTCACTGATCTGATACTCCACGGCTGCGCCGTTGACCCCACCGAGAAG 852
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 834 TACGTCTCTCAATTCACTGATCTGATCCTCCACGGCTGCGCCGTTGACCCCACCGAGAAG 893
Query 853 TTTCCGAGCTGCGAAGATGAAGCGGT-CGCGAATCTCCACCTAGCATCGGAGATAACGGA 911
|||||||||||| ||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 894 TTTCCGAGCTGCAAAGATGAAGCGGTTCA-GAATCTCCGGCTAGCATCGGAGATAACGGA 952
Query 912 GTCTCAGAGGAACAAGATGGAGAGTTTTCGG-CGGAAACACATGACTTATTCGTATTGTT 970
||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||
Sbjct 953 GTCTCAGAGGAACAAGATGGAGA-TTTTCCGACAGAAACACATGACTTATTCGTATTGTT 1011
Query 971 ACGATCATATGAGGTACAAGCTGGTTTTGTCTGAATGTGTGGTGAATCCGGCCGAGGCTA 1030
|||||||||||||||||||| |||||||||| || ||||| ||||||||||| |||||||
Sbjct 1012 ACGATCATATGAGGTACAAGGTGGTTTTGTCGGAGTGTGTTGTGAATCCGGCTGAGGCTA 1071
Query 1031 AACGTCTCAGGGTATATGATCCTGTCACGTTCGGTGGGATCCCTCGCGGTCACCGTCGTG 1090
| ||||||||||| |||||||| ||||||||||||||||| |||| ||| ||||||||||
Sbjct 1072 AGCGTCTCAGGGTCTATGATCCGGTCACGTTCGGTGGGATTCCTCACGGCCACCGTCGTG 1131
Query 1091 GGAAGCACCGGAGCAGG-GCCGTTTAGC-CGGAACTGAGTCAATATGAACCGGTGTATAT 1148
||||||| ||||||||| |||| ||||| || ||||||||| ||||||| ||||||||||
Sbjct 1132 GGAAGCATCGGAGCAGGAGCCGATTAGCTCG-AACTGAGTCGATATGAATCGGTGTATAT 1190
Query 1149 TGTTCAGCTAGAGGGCATTTTTGGCATTTTCTGTCTTGTATAGGAATA 1196
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TGTTCGGCTAGAGGGCATTTTTGGCATTTTCTGTCTTGTATAGGAATA 1238
> AT2G01850.1 | Symbols: EXGT-A3, XTH27, ATXTH27 | endoxyloglucan
transferase A3 | chr2:385199-387344 FORWARD LENGTH=1383
Length=1383
Score = 652 bits (353), Expect = 0.0
Identities = 777/977 (80%), Gaps = 48/977 (5%)
Strand=Plus/Plus
Query 153 TCGATTT-TTAGTTTTCATGTCACTCTTCACCGGTTTGGTTTCTGGATTTGCTCTACAAA 211
||| ||| || ||||||||||| || || ||||||| ||||||||||||||||| ||||
Sbjct 190 TCG-TTTATTGGTTTTCATGTCTCTGTTTTCCGGTTTAGTTTCTGGATTTGCTCTGCAAA 248
Query 212 AGCTTCCTTTTATA-CAGTTCGACGAAGGTTACACACATCTCTTTGGTGACCAA-AATCT 269
| ||||| | | | | || || ||| ||||||| || || |||||||| ||| || ||
Sbjct 249 ATCTTCCAATCACATC-TTTTGAAGAAAGTTACACTCAACTTTTTGGTGA-CAAGAA-CT 305
Query 270 GA-TTGTTCA-CAGAGATGGAAAATCTGTCCGGTTAACGCTCGATGAGAGAACCGGTTCT 327
| ||||||| || |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 306 TATTTGTTCATCA-AGATGGCAAATCTGTCCGGTTAACGCTCGATGAAAGAACCGGTTCC 364
Query 328 GGATTTGTCTCAAATGACAT-TTACTTGCATGGCTTCTTCAGTTCTTCTATCAAATTACC 386
|| ||||| |||||||| | |||||||||||| ||||||||| |||| || ||||||||
Sbjct 365 GGTTTTGTTTCAAATGA-TTATTACTTGCATGGATTCTTCAGTGCTTCAATTAAATTACC 423
Query 387 AGCAGATTACT-CTGCAGGAGTTGTTATCGCCTTTTATCTATCAAATGGAGACT-TGTAT 444
| ||||| | | || ||||||||| | ||||||||| | || |||||||| | |||||
Sbjct 424 TTCTGATTA-TACAGCTGGAGTTGTTGTTGCCTTTTATATGTCTAATGGAGA-TATGTAT 481
Query 445 GAGAAGAATCATGATGAGATAGATTTTGAGTTT-TTGGGGAATATTAGAGGCAAAGAATG 503
||||||||||||||||||||||||||||||||| |||| || ||||||| ||||||||
Sbjct 482 GAGAAGAATCATGATGAGATAGATTTTGAGTTTCTTGGT-AACATTAGAGAAAAAGAATG 540
Query 504 GAG-GATTCAGACGAACATATACGGAAATGGAAGCACACATTTGGGCAGAGAAGAAAGAT 562
||| | ||||||| ||||| ||||| |||||||| || |||| || |||||||| ||||
Sbjct 541 GAGAG-TTCAGACAAACATTTACGGTAATGGAAGTACTCATTCAGGAAGAGAAGAGAGAT 599
Query 563 ATAATCTTTGGTTTGATCCAACAGAGGATTTTCATCAATACAGTATCCTCTGGTCTCTTT 622
||||||| ||||||||||| || || |||||||||||||||||||||||||||||| ||
Sbjct 600 ATAATCTCTGGTTTGATCCTACTGAAGATTTTCATCAATACAGTATCCTCTGGTCTGATT 659
Query 623 CTCACATCATATT-TTGTGTAGACAATGTTCCGATCAGGGAAGTCAAACGCACGGCGGCA 681
||||||||||||| || ||||||||||||||| || || || |||||||| || |||| |
Sbjct 660 CTCACATCATATTCTT-TGTAGACAATGTTCCTATTAGAGAGGTCAAACGTACTGCGGAA 718
Query 682 ATGGGCGGTGACTTCCCGGCGAAGCCAATGTCTTTATACGCAACCATATGGGATGGCTCC 741
||||| ||| |||| || | ||||| |||||| | ||| |||| |||||||| || ||
Sbjct 719 ATGGGTGGTCACTTTCCATCAAAGCCGATGTCTCTCTACACAACAATATGGGACGGTTCT 778
Query 742 AAATGGGCGACTGATGGAGGCAAGTACGGTGTAAATTACAAATATGCCCCTTACGTCGCT 801
|||||||| ||| | || || |||||||||||||| ||||||||||| |||||| | ||
Sbjct 779 AAATGGGCAACTAACGGTGGAAAGTACGGTGTAAACTACAAATATGCGCCTTACATTGCG 838
Query 802 CAATTCACTGATCT-GATACTCCACGGCTGCGCCGTTGACCCCACCGAGAAGTTTCCGAG 860
| ||| | ||||| | | || ||||||||| |||| ||||| | |||| ||||||||||
Sbjct 839 CGGTTCTCGGATCTAG-TCCTGCACGGCTGCCCCGTGGACCCTATCGAGCAGTTTCCGAG 897
Query 861 CTGCGAAGATGAAGCGG-TCGCG-A-AT-C-TCCACCTAGCATCGGAGATAACGGAGTCT 915
||||| || | |||| | | | | || | | | | ||| | |||| || ||
Sbjct 898 GTGCGATGAAGGCGCGGCT-GAGGATATGCGTGCGGC--GCAA-G-AGATTACTCCTTCA 952
Query 916 CAGAGGAACAAGATGGAGAGTTTTCGG-CGGAAACACATGACTTATTCGTATTGTTACGA 974
|| |||| || ||||| |||||| | |||| || |||||| ||||| ||||| || ||
Sbjct 953 CAAAGGAGTAAAATGGAT-GTTTTCAGACGGAGACTCATGACATATTCATATTGCTATGA 1011
Query 975 TCATA-TGAGGTACAA-GCTGGTTTTGTCTGAATGTGTGGTGAATCCGGCCGAGGCT-AA 1031
|| | |||||||| | || ||| || || |||||||||||||| || |||||| ||
Sbjct 1012 TCGGGCT-AGGTACAATGTTGCTTTA-TCGGAGTGTGTGGTGAATCCCGCTGAGGCTCAA 1069
Query 1032 ACGTCTCAGGGTATATGATCCTGTCACG-TTCGGTGGGATCCCTCG-CGGTCACCGTCG- 1088
| | || ||||| |||||||| |||| | || || || || || | || ||||| |
Sbjct 1070 AGG-CTTAGGGTTTATGATCCGGTCA-GATTTGGCGGCATTCCGAGGCGC-CACCG-CAA 1125
Query 1089 TGGGAAGCACCGGAGCA 1105
||| |||||||||||||
Sbjct 1126 TGGAAAGCACCGGAGCA 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58734637650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5