BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471661
Length=2479
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14740.1 | Symbols: | Protein of unknown function (DUF1423)... 3735 0.0
> AT1G14740.1 | Symbols: | Protein of unknown function (DUF1423)
| chr1:5075213-5077791 REVERSE LENGTH=2498
Length=2498
Score = 3735 bits (2022), Expect = 0.0
Identities = 2346/2496 (94%), Gaps = 48/2496 (2%)
Strand=Plus/Plus
Query 1 ctctctctctttctctctttctctctctTTCAACGCCATGATCGGAGAGAAAGATCTCGC 60
|||| ||||| |||||| ||||||||| | |||||| |||||||||||||||||||||||
Sbjct 23 CTCTATCTCTATCTCTCATTCTCTCTCATCCAACGCTATGATCGGAGAGAAAGATCTCGC 82
Query 61 CGGAGATGGAGAATGCTCTCGAACCAAAACATCAAAGCCTCGATTCTCTAATCTAAACAA 120
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 CGGAGATGGAGAGTGTTCTCGAACCAAAACATCAAAGCCTCGATTCTCTAATCTAAACAA 142
Query 121 CCAAACTTATCAAGATGACAAAACCGGTCAGTATCATCAGAAAGGCGTCGACTTTCTCAA 180
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 CCAAACTCATCAAGACGACAAAACCGGTCAGTATCATCAGAAAGGCGTCGACTTTCTCAA 202
Query 181 CGTCCGGTCCAATAATCCCGATGGTGGGTTCTCTTCAAAATCATCACCCAGATCAGGAAA 240
|||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 203 CGTCCGGTCCAACAATCTCGATGGTGGGTTTTCTTCAAAATCATCACCCAGATCAGGAAA 262
Query 241 CGAGCTCACTCTTAGCTATCTCTGCGAAAACCGTGAACTTTCCGGCAGAA-TCGCTGAAA 299
|||||||||||||||||||||||| | || ||| ||||| | || |||||||||
Sbjct 263 CGAGCTCACTCTTAGCTATCTCTGTG--AA-----AAC--TCCGGTA-AACTCGCTGAAA 312
Query 300 GTCTTGGTCAAAAGGGGAAAGAAGTAGTAACGTTTTCTGAGAATTCAAACTACGATGATA 359
|||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||
Sbjct 313 GTCTTGGTCAAAAGGGGAAAGAAGTAGTCACCTTTTCTGAGAATTCAAGCTACGATGATA 372
Query 360 AATGGGTCGAGAGAGATTTCTTCAATTTGAGAGAAATGAATCCGAATTCTTCTAAACGAA 419
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 373 AATGGGTCGAGAGAGATTTCTTCAATTTGAGAGAAATGAATCCTAATTCTTCTAAACGTA 432
Query 420 AGGCTCACgaagaggaagaagaagctgaagaagaagaagaagaagataagaaAACCAACA 479
||||||||||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct 433 AGGCTCACGAAGAAGAAGAAGAAGCT------GAAGAAGAAGAAGATAAGAAAAGTAACA 486
Query 480 AAATCGAAACCCTAAATCTCTCTCTAGCTTTACCTGATGTTTCTCTGTCTTTGACGGCGT 539
||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||
Sbjct 487 AAATCGAAACCCTAAATCTCTCTTTAGCTTTACCTGATGTATCTCTGTCTTTAACGGCGT 546
Query 540 CAAACGCCGTGAAAAGGCCGAGA---GTGACGAGCGAGCGAACAACGACGTCGTTTTCAA 596
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 547 CAAACGCCGTGAAAAGGCCGAGAGTGGTGACGAGCGAGAGAACAACGACGTCGTTTTCAA 606
Query 597 ACGATTTCACGGCGACGGCGCCGTCGATGTCTTACTCTTACTCTCACCCTTTCTCTCACA 656
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 607 ACGATTTCACGGCGACGGCGCCGTCGATGTCTTACTCTTACTCTCATCCTTTCTCTCACA 666
Query 657 ACATCAGCTGCTCCATGACTCGAAACTCCACAGATTTCGATTGCTCCGTTGGTAAAGACG 716
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACATTAGCTGCTCGATGACTCGAAACTCCACAGATTTCGATTGCTCCGTTGGTAAAGACG 726
Query 717 ACCATATCTGGTGCGCCGGTGAAGGAACCAACGGATCTGTTCACAGCCGATTCAGACCAA 776
| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 727 ATCACATCTGGTGCGCCGGCGAAGGAACCAACGGATCTGTTCATAGCCGATTCAGACCAA 786
Query 777 TCGGTGACGGCGGCGTTGCGCTCGCTAACAATCCAATTTCCGGTAAACCTTCAAGCTCTG 836
|||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 787 TCGGTGACGGCGGCGTAGCGCTCGCGAACAATCCAGTTTCCGGTAAACCTTCAAGCTCTG 846
Query 837 CCGATTACTCTTTC-TTCCCTTCGGAGTTACCAGCTCGTCCGGGGAATGAAGTCACGATC 895
| |||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 847 CTGATTACTCTTTCTTTCCC-TCGGAGTTACCGGCTCGGCCGGGGAATGAAGTCACGATC 905
Query 896 TCCGGCGATTCGAGGAAGAAAGTTCCTAACTTGGAAGATAACGACGCGGTTAGATCGGAG 955
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 906 TCCGGCGATTCGAGGAAGAAAGTAGCTAACTTGGAAGATAACGATGCGGTTAGATCGGAG 965
Query 956 AGGGTTTTATACGACATCGTTTCGAAATCGATTTCTTCTGTGGCTTTGATTATTCAAGGG 1015
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 AGGGTGTTATACGACATCGTTTCGAAATCGATTTCTTCTGTGGCTTTGATTATTCAAGGG 1025
Query 1016 ATGGCTGATGAAACTTTGGAATCAGCTAAAGAGTATTTGAGGAACTTGATTGATTCACCG 1075
||||||||||||||| | |||||||||||||||||| | |||||||||||||||||||||
Sbjct 1026 ATGGCTGATGAAACTCTAGAATCAGCTAAAGAGTATCTAAGGAACTTGATTGATTCACCG 1085
Query 1076 GAGAAGAAGGAGAAGCTGACGAATCTTCAGAACCAGATTGATAAAAGATCTGATCTTAGC 1135
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1086 GAGAAGAAGGAGAAGCTGGTGAATCTTCAGAACCAGATTGATAAAAGGTCTGATCTTAGT 1145
Query 1136 AAAGAGACGTTATCGAAATGTGTTAAAGATCAGCTTGATATCTTGGTAGCTGTAAGAACA 1195
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 AAGGAGACGTTATCGAAATGTGTTAAAGATCAGCTTGATATCTTGGTAGCTGTAAGAACA 1205
Query 1196 GGGCTTAAGTATTTCCTCTCTGGTAAGATCAGAATCCCTATGAACGAATTGGTAGAGATC 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 GGGCTTAAGTATTTCCTCTCTGGTAAGATCAGAATCCCTATGAACGAATTGGTAGAGATC 1265
Query 1256 TTTCTGTTCTTGAGATGTAGGAATGTGAATTGTAAGAGTCTCTTGCCTGTTGATGACTGT 1315
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1266 TTTCTCTTCTTGAGATGTAGGAATGTGAATTGTAAGAGTCTCTTGCCTGTTGATGATTGT 1325
Query 1316 GAATGCAAAATCTGTTCCAACAACAAAGGCTTTTGTAGCTCTTGTATGTGTCCTGTTTGT 1375
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 GAATGCAAGATCTGTTCCAACAACAAAGGCTTTTGTAGCTCTTGTATGTGTCCTGTTTGT 1385
Query 1376 TTGAGATTTGACTCTGCTAGCAATACTTGTAGTTGGGTTGGTTGTGATGTGTGTTCGCAT 1435
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TTGAGATTTGATTCAGCTAGCAATACTTGTAGTTGGGTTGGTTGTGATGTGTGTTCGCAT 1445
Query 1436 TGGTGTCACGCTGCTTGTGGGATTCAGAAGAATTTGATCAAACCGGGACATAGTTTGAAA 1495
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 TGGTGTCATGCTGCTTGTGGGATTCAGAAGAATTTGATCAAACCGGGACATAGTTTGAAA 1505
Query 1496 GGTCAGAGAGGTACTACTGAGATGATGTTCCATTGCATTGGATGTGCTCACAAATCAGAG 1555
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1506 GGTCAGAGAGGTACTACTGAGATGATGTTTCATTGCATTGGATGTGCTCATAAGTCAGAG 1565
Query 1556 ATGTTTGGATTCGTTAAGGATGTTTTTGTGTGTTGCGCCAAGAATTGGGGACTTGAGACT 1615
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1566 ATGTTTGGATTCGTTAAGGATGTTTTTGTGTGTTGCGCTAAGAATTGGGGACTTGAGACT 1625
Query 1616 TTGATCAAGGAGCTTGATTGTGTTAGAATGGTTTTCCGAGGAAGCGATGATGCAAAAGGC 1675
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1626 TTGATCAAGGAGCTTGATTGTGTTAGAAAGGTTTTCCGAGGAAGTGATGATGCAAAAGGC 1685
Query 1676 AAAGCATTGTATCTCAAAGCCAATGAAATGGTTAAGAAGTTGGAGAGTAAACAGATTTCC 1735
||||||||| |||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1686 AAAGCATTGCATCTTAAAGCCAATGAAATGGTTAAGAAGCTAGAGAGTAAACAGATTTCC 1745
Query 1736 CCGCTTGATGCTTCTAACTTCATCATTCAGTTCTTCAACTATGCGGAGTCAGTACCAGAA 1795
|| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1746 CCTCTTGATGCTTCTAACTTCATCATTCAGTTCTTCAACTATGCTGAGTCAATACCAGAA 1805
Query 1796 ATTCCCGACCCTCCGAGAGAGCTAATAGTTGCAGCAGAAACGAGCTACAGGAAGGACGAG 1855
||||||||||| ||||||||||||| |||||||| |||||||||||||| || ||||||
Sbjct 1806 ATTCCCGACCCACCGAGAGAGCTAACCGTTGCAGCGGAAACGAGCTACAGAAAAGACGAG 1865
Query 1856 GCATCTGTGACGCCTTCAACATCCAAGGATCAAAAGAAGAAGAGCTTTGCGTTAACTGAT 1915
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1866 GCATCTGTGACGCCTTCAACATCAAAGGATCAAAAGAAGAAGAGCTTTGCGTTAACAGAT 1925
Query 1916 GCAATGATGAACAGTTTTGATAGTTTAGAAAGCATGGTGAGAATCAAGGAGGCTGAAACA 1975
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1926 GCAATGATGAACAGTTTTGATAGTTTAGAGAGCATGGTGAGAATCAAGGAGGCTGAAACA 1985
Query 1976 AGAATGTTCCAGAAGAAAGCGGACGAGGCCAGAATAGAAGCAGAGAGTTTCAAGAGAATG 2035
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1986 AGAATGTTCCAGAAGAAAGCAGACGAGGCCAGAATAGAGGCAGAGAGTTTCAAGAGAATG 2045
Query 2036 ATAGAAATGAAGACGGAGAAGATGGAGGAGGAGTACACAGAGAAACTATCGCGTCTGTGT 2095
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2046 ATAGAAATGAAGACGGAGAAGATGGAGGAGGAGTACACAGAGAAACTAGCGCGTCTGTGT 2105
Query 2096 CTGCAGGAGACAGAGGAGAGAAGGAGGAATAAGCTGGAGGAGCTCAAGAAGCTTGAGAAT 2155
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2106 CTGCAGGAGACGGAGGAGAGAAGGAGGAATAAGCTGGAGGAGCTCAAGAAGCTTGAGAAT 2165
Query 2156 TCGCACTGCGATTACAGGAACATGAAGCTGAGAATGGAGGCTGAGATTGCAGGATTGTTG 2215
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2166 TCGCACTGCGATTACAGGAACATGAAGCTGAGAATGGAGGCTGAGATTGCTGGATTGTTG 2225
Query 2216 AAGAGAATGGAAGTTACAAGACAACAATTAGTATGAATGATTCTGAAAAACAGAGCCTCT 2275
||||||||||||||||||||||||||||| ||||||| || || |||||||||||||| |
Sbjct 2226 AAGAGAATGGAAGTTACAAGACAACAATTGGTATGAAGGAATCCGAAAAACAGAGCCTTT 2285
Query 2276 CA-TTATCCATT-----GC--TCTGCTCCTTGTTT--TTGTTGTGGGAAATATCAAA-TT 2324
|| ||||||||| || |||||||||||||| || |||||||||||| |||| ||
Sbjct 2286 CAATTATCCATTTCTCTGCACTCTGCTCCTTGTTTCGTT-TTGTGGGAAATA-CAAAATT 2343
Query 2325 AGTGACAACTGTTTTATTTGTTTCTCTGGTA-TTGTCTTCTAAATTTTCAAttttttttt 2383
||||| || |||||||| ||||||||||| | ||||||||||||| | ||||||||
Sbjct 2344 AGTGATAAGTGTTTTATATGTTTCTCTGGAAATTGTCTTCTAAAT---C--TTTTTTTT- 2397
Query 2384 ttAATCTATAACTTCCTCttttttttgcttatatttacaaatatacatattttatatgat 2443
|||||||||||||| ||||| | ||||||||| || |||| ||||||||||||||
Sbjct 2398 --AATCTATAACTTCCG-TTTTT---GATTATATTTATAACTATATATATTTTATATGAT 2451
Query 2444 tatataatatatgtattttgtataGAGTAAATCATT 2479
||||||||| |||||||||||||| |||||||||||
Sbjct 2452 TATATAATACATGTATTTTGTATAAAGTAAATCATT 2487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123009344236
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5