BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471662 Length=1981 Score E Sequences producing significant alignments: (Bits) Value AT1G14750.1 | Symbols: SDS | Cyclin family protein | chr1:50794... 3048 0.0 > AT1G14750.1 | Symbols: SDS | Cyclin family protein | chr1:5079407-5082520 REVERSE LENGTH=2101 Length=2101 Score = 3048 bits (1650), Expect = 0.0 Identities = 1891/2003 (94%), Gaps = 33/2003 (2%) Strand=Plus/Plus Query 1 ACTGCATCAGCCCACTCTCTAGTCTCTAACTAACGAACTTCCAATTTC-AAATTCGAAAT 59 ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| | Sbjct 1 ACTGCATCAGCCCACTCTCTAGTCTCTGACTAACGAACTTCCATTTTCAAAATTCGAATT 60 Query 60 TCTAAATTCTACTTTTAAGCATTCGTACGGAGAAAAAATGAAGGAGATCGCGATGAGGAA 119 ||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTAATTTCTAGTTTCAAGCTTTCGTACGGAGAAAAAATGAAGGAGATCGCGATGAGGAA 120 Query 120 TTCGAAGCGCAAGCCTGAGCCGACGCCGTTCGCCGGAAAGAAGCTCCGGTCGACGCGATT 179 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 TTCAAAGCGCAAGCCTGAGCCGACGCCGTTCGCCGGGAAGAAGCTCCGGTCGACGCGATT 180 Query 180 ACGCCGGAAGAGAGCTCAGATCTCTCCAGTTGTTGTTCAGTCACCTCTCTGGAGCAAGCA 239 ||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||| || Sbjct 181 ACGCCGGAAGAGAGCACAGATCTCTCCCGTTCTTGTTCAATCACCTCTCTGGAGCAAACA 240 Query 240 AATTGGAGTCTCTGCTGCTTCTGTTGATTCCTGCTCCGATTTGCTCTTCGTAGCTGATGA 299 ||| |||||||||||||||||||| |||||||||||||||||| | |||||||||| Sbjct 241 AATCGGAGTCTCTGCTGCTTCTGTCGATTCCTGCTCCGATTTG-----C-TAGCTGATGA 294 Query 300 CAACGTCTCCTGTGGTTCGAGCAGAGTCGAGAAGAGCTCGAATCCGAAGAAGAGTCTAAT 359 |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 295 CAACGTTTCCTGTGGTTCGAGCAGAGTCGAGAAGAGCTCGAATCCGAAGAAGACTCTAAT 354 Query 360 TGAAGAGGTAGAAGTTTCTAAACCTGGTAATAATGTGAAGGAGGTGATAGGCGATTCCAA 419 |||||||||||||||||||||||||||| |||||||||||||| ||| || ||||| || Sbjct 355 TGAAGAGGTAGAAGTTTCTAAACCTGGTTATAATGTGAAGGAGACGATTGGTGATTCGAA 414 Query 420 ATTCCGGAGGATTACGAGGTCTTACTCTAAGCTATACAAGGAGAAGGAAGGAGATGAGAT 479 ||| || ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 415 ATTTCGAAGGATTACGAGGTCTTACTCTAAGCTACACAAGGAGAAGGAGGGAGATGAGAT 474 Query 480 CGAAGTAAGCGAATCGTCTTGTGTTGATTCGAATTCTGGTGCTGGATTAAGGAGATTGAA 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 CGAAGTAAGCGAATCGTCTTGTGTTGATTCGAATTCTGGTGCTGGATTAAGGAGATTGAA 534 Query 540 TGTGAAGGGAAACGAAATTAACGACAACGATGAAATCTCTTTCTCACGATCCGATGTGAC 599 |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 535 TGTGAAGGGAAATAAAATTAACGACAACGATGAGATCTCTTTCTCACGATCCGATGTGAC 594 Query 600 TTTCGCCGGACATGTCTCCAACAGCCGGAGTTTGAATTTCGGATCGGAGAATAAGGAGAG 659 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 595 CTTCGCCGGACATGTCTCCAACAGCCGGAGTTTGAATTTCGAATCGGAGAATAAGGAGAG 654 Query 660 CGACGTCGTTTCAGTCATATCTGGAGTTGAGTGCTGTTCCAAGTTCGGGAGCGTTACCGG 719 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 655 CGACGTCGTTTCTGTCATATCTGGAGTTGAGTACTGTTCCAAGTTCGGGAGCGTTACCGG 714 Query 720 AGGAGCTGAGAACGAAGAAATTGAAATCTCCAAACCAAGCAGCTTCGTGGAAGCTGATTC 779 ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 715 AGGAGCTGATAACGAAGAAATTGAAATCTCCAAGCCGAGCAGCTTCGTGGAAGCTGATTC 774 Query 780 CTCTCTTGGATCAGCCAAGGAATTGAAGCCGGAGCTTGAGATAGTCGGATGCGTCTCTGA 839 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 CTCTCTTGGATCGGCCAAGGAATTGAAGCCGGAGCTTGAGATAGTCGGATGCGTCTCTGA 834 Query 840 TCTCGCTTGCACTGAGAAATTCTCTGACGAAGAGGTTTCGGATTCTTTCGATGATGAGTT 899 |||||||||| ||||||||||||| | |||||||||||||||||| |||||||||||| Sbjct 835 TCTCGCTTGCTCTGAGAAATTCTC-G--GAAGAGGTTTCGGATTCTCTCGATGATGAGTC 891 Query 900 ATCTGAGCAGCGTTCCGAGATTTTTTCACAGTATTCCGACTTCGATTACTCGGATTACAC 959 ||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||| Sbjct 892 ATCTGAGCAACGTTCAGAGATATATTCACAGTATTCCGACTTCGATTACTCGGATTACAC 951 Query 960 TCCGTCGAtttttttCGACTCTGGTAGCGAATTCTCTGAGAAATCTTCCTCTGATTCTCC 1019 |||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 952 TCCGTCCATCTTCTTCGACTCTGGCAGCGAATTCTCTGAGAAATCTTCCTCTGATTCTCC 1011 Query 1020 AATTTCACATTCTCGCTCTCTGTATCTCGAGTTCAAGGAACAGTTCTGTAGATCCACAAT 1079 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || Sbjct 1012 TATTTCACATTCTCGCTCTCTGTACCTCCAGTTCAAGGAACAGTTCTGTAGATCCACGAT 1071 Query 1080 TCCGAACGATTTGGGATCTTCTTGCCAGGAAGAAATTCACTCTGAATTGCTAAGGTTTGA 1139 ||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1072 TCCCAACGATTTTGGATCTTCTTGCGAGGAAGAAATTCACTCTGAATTGCTAAGGTTTGA 1131 Query 1140 TGATGAGGAGGTGGAAGAGAGCTATCTAAGGCTGAGGGAAAGAGAGAGAAGTCATGCATA 1199 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1132 TGATGAGGAGGTGGAAGAGAGCTATCTAAGGCTGAGGGAAAGAGAAAGAAGTCATGCATA 1191 Query 1200 TATGCGGGACTGTGCTAAGGCTTACTGCTCCATGATGGACTGTACTGATCTCATCCCTCG 1259 ||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||||| Sbjct 1192 TATGCGGGACTGTGCTAAGGCATACTGCTCCAGGATGGACAATACTGGTCTCATCCCTCG 1251 Query 1260 TTTACGCTCTATCATGGTTCAGTGGATTGTGAAGCAATGTTCTGACATGGAGCTTCAGCA 1319 | ||||||| ||||||||||| |||||||| ||||||||||||||||||| ||||||||| Sbjct 1252 TCTACGCTCCATCATGGTTCAATGGATTGTAAAGCAATGTTCTGACATGGGGCTTCAGCA 1311 Query 1320 AGAGACATTGTTTCTAGGAGTTGGTCTGTTGGATCGATTCCTGAGCAAAGGATCATTCAA 1379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1312 AGAGACATTGTTTCTAGGAGTTGGTCTGTTGGATCGATTCCTGAGCAAAGGATCATTCAA 1371 Query 1380 AAGCGAAAGGACTCTAATACTAGTCGGGATTGCGAGTCTTACTCTGGCCACCAGAATTGA 1439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1372 AAGCGAAAGGACTCTAATACTAGTCGGGATTGCGAGTCTTACTCTGGCCACCAGAATTGA 1431 Query 1440 AGAAAATCAACCTTACAACAGCATCCGGAAAAGGAACTTCACCATTCAGAAACTAAGATA 1499 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1432 AGAAAATCAACCTTACAACAGCATCCGGAAAAGGAACTTCACCATTCAGAACCTAAGATA 1491 Query 1500 TAGCCGGCATGAAGTGGTGGCAATGGAGTGGCTGGTTCAAGAAGTCCTCAACTTCAAATG 1559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1492 TAGCCGGCATGAAGTGGTGGCAATGGAGTGGCTGGTTCAAGAAGTCCTCAACTTCAAATG 1551 Query 1560 CTTCACACCCACTATCTTCAACTTCTTGTGGTTCTACTTAAAAGCTGCTGGAGCCAATCC 1619 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1552 CTTCACACCCACAATCTTCAACTTCTTGTGGTTCTACTTAAAAGCTGCTCGAGCCAATCC 1611 Query 1620 AGAAGTTGAAAGGAAAGCCAAATCCTTGGCTGTTACCTCGCTATCCGACCACACTCAACT 1679 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1612 AGAAGTTGAAAGGAAAGCCAAATCCTTGGCTGTTACCTCACTATCCGACCAAACTCAACT 1671 Query 1680 CTGTTTTTGGCCCTCAACTGTAGCAGCTGCACTCGTGGTTCTCGCCTGCATCGAACACAA 1739 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1672 CTGTTTTTGGCCCTCAACTGTAGCAGCTGCACTCGTGGTTCTCGCCTGCATCGAACACAA 1731 Query 1740 CAAAATCTCTGCCTACCAACGAGTCATAAAGGTCCATGTTAGAACAACAGATAACGAGTT 1799 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1732 CAAAATCTCTGCATACCAACGAGTCATAAAGGTCCATGTTAGAACAACAGATAACGAGTT 1791 Query 1800 GCCTGAATGCGTCAAGAGTCTGGACTGGTTGCTTGGGCAGTAAGCAATCAAAAAGAATCA 1859 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1792 GCCTGAATGCGTTAAGAGTCTGGACTGGTTGCTTGGGCAGTAAGCAATCAAAAAGAA-CA 1850 Query 1860 AAAGCCCTAAAACAAGGACACAGTATACTCCGATACGAACACACA----A--A--AC-A- 1909 ||| ||||||||| |||||||||||||||||||||| |||||||| | | || | Sbjct 1851 AAAACCCTAAAACCAGGACACAGTATACTCCGATACCAACACACAGGTTATCATTACTAT 1910 Query 1910 --A-A----CA--CA-A-GGTAAGTAATAAGAAATTCCTCTACAGATTTATATACTTAAT 1958 | | || || | ||||||||||||||| | |||||||||||||||||||||||| Sbjct 1911 TTACAAAAACAAACACAAGGTAAGTAATAAGAACT-CCTCTACAGATTTATATACTTAAT 1969 Query 1959 CGAGCTGGACTTAATTAGCTCTT 1981 ||||||||||||||||||||||| Sbjct 1970 CGAGCTGGACTTAATTAGCTCTT 1992 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98142065475 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5