BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471662
Length=1981
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14750.1 | Symbols: SDS | Cyclin family protein | chr1:50794... 3048 0.0
> AT1G14750.1 | Symbols: SDS | Cyclin family protein | chr1:5079407-5082520
REVERSE LENGTH=2101
Length=2101
Score = 3048 bits (1650), Expect = 0.0
Identities = 1891/2003 (94%), Gaps = 33/2003 (2%)
Strand=Plus/Plus
Query 1 ACTGCATCAGCCCACTCTCTAGTCTCTAACTAACGAACTTCCAATTTC-AAATTCGAAAT 59
||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| |
Sbjct 1 ACTGCATCAGCCCACTCTCTAGTCTCTGACTAACGAACTTCCATTTTCAAAATTCGAATT 60
Query 60 TCTAAATTCTACTTTTAAGCATTCGTACGGAGAAAAAATGAAGGAGATCGCGATGAGGAA 119
||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTAATTTCTAGTTTCAAGCTTTCGTACGGAGAAAAAATGAAGGAGATCGCGATGAGGAA 120
Query 120 TTCGAAGCGCAAGCCTGAGCCGACGCCGTTCGCCGGAAAGAAGCTCCGGTCGACGCGATT 179
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 TTCAAAGCGCAAGCCTGAGCCGACGCCGTTCGCCGGGAAGAAGCTCCGGTCGACGCGATT 180
Query 180 ACGCCGGAAGAGAGCTCAGATCTCTCCAGTTGTTGTTCAGTCACCTCTCTGGAGCAAGCA 239
||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||| ||
Sbjct 181 ACGCCGGAAGAGAGCACAGATCTCTCCCGTTCTTGTTCAATCACCTCTCTGGAGCAAACA 240
Query 240 AATTGGAGTCTCTGCTGCTTCTGTTGATTCCTGCTCCGATTTGCTCTTCGTAGCTGATGA 299
||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 241 AATCGGAGTCTCTGCTGCTTCTGTCGATTCCTGCTCCGATTTG-----C-TAGCTGATGA 294
Query 300 CAACGTCTCCTGTGGTTCGAGCAGAGTCGAGAAGAGCTCGAATCCGAAGAAGAGTCTAAT 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 295 CAACGTTTCCTGTGGTTCGAGCAGAGTCGAGAAGAGCTCGAATCCGAAGAAGACTCTAAT 354
Query 360 TGAAGAGGTAGAAGTTTCTAAACCTGGTAATAATGTGAAGGAGGTGATAGGCGATTCCAA 419
|||||||||||||||||||||||||||| |||||||||||||| ||| || ||||| ||
Sbjct 355 TGAAGAGGTAGAAGTTTCTAAACCTGGTTATAATGTGAAGGAGACGATTGGTGATTCGAA 414
Query 420 ATTCCGGAGGATTACGAGGTCTTACTCTAAGCTATACAAGGAGAAGGAAGGAGATGAGAT 479
||| || ||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 415 ATTTCGAAGGATTACGAGGTCTTACTCTAAGCTACACAAGGAGAAGGAGGGAGATGAGAT 474
Query 480 CGAAGTAAGCGAATCGTCTTGTGTTGATTCGAATTCTGGTGCTGGATTAAGGAGATTGAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CGAAGTAAGCGAATCGTCTTGTGTTGATTCGAATTCTGGTGCTGGATTAAGGAGATTGAA 534
Query 540 TGTGAAGGGAAACGAAATTAACGACAACGATGAAATCTCTTTCTCACGATCCGATGTGAC 599
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 535 TGTGAAGGGAAATAAAATTAACGACAACGATGAGATCTCTTTCTCACGATCCGATGTGAC 594
Query 600 TTTCGCCGGACATGTCTCCAACAGCCGGAGTTTGAATTTCGGATCGGAGAATAAGGAGAG 659
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 595 CTTCGCCGGACATGTCTCCAACAGCCGGAGTTTGAATTTCGAATCGGAGAATAAGGAGAG 654
Query 660 CGACGTCGTTTCAGTCATATCTGGAGTTGAGTGCTGTTCCAAGTTCGGGAGCGTTACCGG 719
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 655 CGACGTCGTTTCTGTCATATCTGGAGTTGAGTACTGTTCCAAGTTCGGGAGCGTTACCGG 714
Query 720 AGGAGCTGAGAACGAAGAAATTGAAATCTCCAAACCAAGCAGCTTCGTGGAAGCTGATTC 779
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 715 AGGAGCTGATAACGAAGAAATTGAAATCTCCAAGCCGAGCAGCTTCGTGGAAGCTGATTC 774
Query 780 CTCTCTTGGATCAGCCAAGGAATTGAAGCCGGAGCTTGAGATAGTCGGATGCGTCTCTGA 839
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CTCTCTTGGATCGGCCAAGGAATTGAAGCCGGAGCTTGAGATAGTCGGATGCGTCTCTGA 834
Query 840 TCTCGCTTGCACTGAGAAATTCTCTGACGAAGAGGTTTCGGATTCTTTCGATGATGAGTT 899
|||||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct 835 TCTCGCTTGCTCTGAGAAATTCTC-G--GAAGAGGTTTCGGATTCTCTCGATGATGAGTC 891
Query 900 ATCTGAGCAGCGTTCCGAGATTTTTTCACAGTATTCCGACTTCGATTACTCGGATTACAC 959
||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 892 ATCTGAGCAACGTTCAGAGATATATTCACAGTATTCCGACTTCGATTACTCGGATTACAC 951
Query 960 TCCGTCGAtttttttCGACTCTGGTAGCGAATTCTCTGAGAAATCTTCCTCTGATTCTCC 1019
|||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 952 TCCGTCCATCTTCTTCGACTCTGGCAGCGAATTCTCTGAGAAATCTTCCTCTGATTCTCC 1011
Query 1020 AATTTCACATTCTCGCTCTCTGTATCTCGAGTTCAAGGAACAGTTCTGTAGATCCACAAT 1079
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 1012 TATTTCACATTCTCGCTCTCTGTACCTCCAGTTCAAGGAACAGTTCTGTAGATCCACGAT 1071
Query 1080 TCCGAACGATTTGGGATCTTCTTGCCAGGAAGAAATTCACTCTGAATTGCTAAGGTTTGA 1139
||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1072 TCCCAACGATTTTGGATCTTCTTGCGAGGAAGAAATTCACTCTGAATTGCTAAGGTTTGA 1131
Query 1140 TGATGAGGAGGTGGAAGAGAGCTATCTAAGGCTGAGGGAAAGAGAGAGAAGTCATGCATA 1199
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1132 TGATGAGGAGGTGGAAGAGAGCTATCTAAGGCTGAGGGAAAGAGAAAGAAGTCATGCATA 1191
Query 1200 TATGCGGGACTGTGCTAAGGCTTACTGCTCCATGATGGACTGTACTGATCTCATCCCTCG 1259
||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||
Sbjct 1192 TATGCGGGACTGTGCTAAGGCATACTGCTCCAGGATGGACAATACTGGTCTCATCCCTCG 1251
Query 1260 TTTACGCTCTATCATGGTTCAGTGGATTGTGAAGCAATGTTCTGACATGGAGCTTCAGCA 1319
| ||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 1252 TCTACGCTCCATCATGGTTCAATGGATTGTAAAGCAATGTTCTGACATGGGGCTTCAGCA 1311
Query 1320 AGAGACATTGTTTCTAGGAGTTGGTCTGTTGGATCGATTCCTGAGCAAAGGATCATTCAA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AGAGACATTGTTTCTAGGAGTTGGTCTGTTGGATCGATTCCTGAGCAAAGGATCATTCAA 1371
Query 1380 AAGCGAAAGGACTCTAATACTAGTCGGGATTGCGAGTCTTACTCTGGCCACCAGAATTGA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 AAGCGAAAGGACTCTAATACTAGTCGGGATTGCGAGTCTTACTCTGGCCACCAGAATTGA 1431
Query 1440 AGAAAATCAACCTTACAACAGCATCCGGAAAAGGAACTTCACCATTCAGAAACTAAGATA 1499
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1432 AGAAAATCAACCTTACAACAGCATCCGGAAAAGGAACTTCACCATTCAGAACCTAAGATA 1491
Query 1500 TAGCCGGCATGAAGTGGTGGCAATGGAGTGGCTGGTTCAAGAAGTCCTCAACTTCAAATG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 TAGCCGGCATGAAGTGGTGGCAATGGAGTGGCTGGTTCAAGAAGTCCTCAACTTCAAATG 1551
Query 1560 CTTCACACCCACTATCTTCAACTTCTTGTGGTTCTACTTAAAAGCTGCTGGAGCCAATCC 1619
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1552 CTTCACACCCACAATCTTCAACTTCTTGTGGTTCTACTTAAAAGCTGCTCGAGCCAATCC 1611
Query 1620 AGAAGTTGAAAGGAAAGCCAAATCCTTGGCTGTTACCTCGCTATCCGACCACACTCAACT 1679
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1612 AGAAGTTGAAAGGAAAGCCAAATCCTTGGCTGTTACCTCACTATCCGACCAAACTCAACT 1671
Query 1680 CTGTTTTTGGCCCTCAACTGTAGCAGCTGCACTCGTGGTTCTCGCCTGCATCGAACACAA 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 CTGTTTTTGGCCCTCAACTGTAGCAGCTGCACTCGTGGTTCTCGCCTGCATCGAACACAA 1731
Query 1740 CAAAATCTCTGCCTACCAACGAGTCATAAAGGTCCATGTTAGAACAACAGATAACGAGTT 1799
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 CAAAATCTCTGCATACCAACGAGTCATAAAGGTCCATGTTAGAACAACAGATAACGAGTT 1791
Query 1800 GCCTGAATGCGTCAAGAGTCTGGACTGGTTGCTTGGGCAGTAAGCAATCAAAAAGAATCA 1859
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1792 GCCTGAATGCGTTAAGAGTCTGGACTGGTTGCTTGGGCAGTAAGCAATCAAAAAGAA-CA 1850
Query 1860 AAAGCCCTAAAACAAGGACACAGTATACTCCGATACGAACACACA----A--A--AC-A- 1909
||| ||||||||| |||||||||||||||||||||| |||||||| | | || |
Sbjct 1851 AAAACCCTAAAACCAGGACACAGTATACTCCGATACCAACACACAGGTTATCATTACTAT 1910
Query 1910 --A-A----CA--CA-A-GGTAAGTAATAAGAAATTCCTCTACAGATTTATATACTTAAT 1958
| | || || | ||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1911 TTACAAAAACAAACACAAGGTAAGTAATAAGAACT-CCTCTACAGATTTATATACTTAAT 1969
Query 1959 CGAGCTGGACTTAATTAGCTCTT 1981
|||||||||||||||||||||||
Sbjct 1970 CGAGCTGGACTTAATTAGCTCTT 1992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98142065475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5