BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471664

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14755.1 | Symbols:  | S locus-related glycoprotein 1 (SLR1)...   453    6e-127


> AT1G14755.1 | Symbols:  | S locus-related glycoprotein 1 (SLR1) 
binding pollen coat protein family | chr1:5083742-5084342 
FORWARD LENGTH=504
Length=504

 Score =  453 bits (245),  Expect = 6e-127
 Identities = 275/290 (95%), Gaps = 0/290 (0%)
 Strand=Plus/Plus

Query  1    aaaaaaaaaaCATAAAACCATGAGAAACCTCGTAAATTTCGCTGTTCTTTTCATGGCCAT  60
            ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct  5    AAAAAAAAAACATAAAACCATGAGAAACCTCATAAATTTCGCTGTTCTTATCATGACCAT  64

Query  61   CTTCATAGTTTCAGCCTCAGGTGCGAGAGAGACGAGAATGATGGAACAAACTTGCCCCGT  120
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  65   CTTCATCGTTTCAGCCTCAGGTGCGAGAGAGACGAGAATGATGGAACAAACTTGCCCCGT  124

Query  121  TTTCTGGCCAATGGTTCCATGCGATGCTAAAAAATGCGACCAAATGTGTCGCGATTATTA  180
            |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  125  TTTCTGGCCAATGGTTCCATGCGATGCTAACAAATGCGAACAAATGTGTCGCGATTATTA  184

Query  181  CGGTCCTGTTCCCTCTTACTGTAATAGAATCGGAGCTCCAAACGCTGAATGTGCATGTAG  240
            |||| ||||||||||||||||||||||||||||| ||||||  |||||||| || |||||
Sbjct  185  CGGTTCTGTTCCCTCTTACTGTAATAGAATCGGAACTCCAATTGCTGAATGCGCCTGTAG  244

Query  241  TCTTACACCATGTTAATGACGCAAAGGCTTTCTCAAGGATATATTAAGCT  290
            |||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct  245  TCTTACACCATGTTAATGACCCAAAGGCTTTTTCAAGGATATTTTAAGCT  294



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21916738564


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5