BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471666
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14770.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 893 0.0
> AT1G14770.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:5086626-5088846 REVERSE LENGTH=1682
Length=1682
Score = 893 bits (483), Expect = 0.0
Identities = 588/639 (92%), Gaps = 6/639 (1%)
Strand=Plus/Plus
Query 1 ATGGATGACCATGGTGGTTCTGATTTGAGCATTGAGGATCTGATGGATGAGTATTCTTCT 60
|||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 152 ATGGATGACCATGGTGGTTCTGATTTGAGCCTCGAGGATCTCATGGATGAGTATTCTTCT 211
Query 61 CGACCCACACAAATAGCTGAATGGTTATGGTGTATTGAATATGTAGCCAAATTTGTGAAG 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 212 CGACCCGCACAAATAGCTGAATGGTTATGGTGTATTGAATATGTAGCCAAATTTGTCAAG 271
Query 121 GATATAAGCTGCTTACTCGATTTGATGAACATGGGTTATCAATACTCTAATGACTATGGG 180
||| |||||||||||||||||||||||||||| |||||||| |||||| |||||||||||
Sbjct 272 GATCTAAGCTGCTTACTCGATTTGATGAACATTGGTTATCAGTACTCTGATGACTATGGG 331
Query 181 A-GAAGGATCAATGAAGTCCTGTCTCTTAGAGTCTTGGAGTTCATGTTTGATCCAACCAA 239
| || |||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 332 AAGA-GGATTAATGAAGTCCTGTCTCTTAGAGTCTTGGAGTTCATGTTTGATCCAAGCAT 390
Query 240 GTAT-GATGCTAACGGTGTTGGTGTTGCTTCTACTTCAGAGGCAAGAGTTGAGTTTGATT 298
| | ||||||||||||||||||||||||||| ||| ||||| || ||| ||||||||||
Sbjct 391 G-AGCGATGCTAACGGTGTTGGTGTTGCTTCTGCTTTAGAGGAAAAAGTGGAGTTTGATT 449
Query 299 TATCTTTGAGTAACACTGATGTTCTCAGAGCAATTCTGAAAGAGATTCCAGTATCAGAAC 358
|||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 450 TATCTTTGAGTAACGCTGATGTTCTCAGAGGAATTCTGAAAGAGATTCCAGTAGCAGAAC 509
Query 359 TGCGAGCGGGCATGCCAGAGCTATCAAAGTTTAATGTTCTTCCATTTATTGCTCACAAGA 418
| |||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 510 TACGAGTGGGCATGCCAGAGCTATCAAAGTTCAATGTTCTACCATTTATTGCTCACAAGA 569
Query 419 ACATGTGTTTGCCACAATGCGCACTGGAGATGCTGAGAGATGTGAGTTTAATGGAGAATC 478
|| |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 570 ACTTGTGTTTGCCACAATGTGCACTAGAGAAGCTGAGAGATGTGAGTTTAATGGAGAATC 629
Query 479 AGACTAGTGCAGCTCCTTCCATGGAAACAAATGACCCTGTTTTTAGAGATGTTAGATCAG 538
||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 630 AGACTAGTGCAACTCCTTTCATGGAAACAAATGACCCTGTTTTTAGAGATGATAGATCAG 689
Query 539 TGCACATGGATACATGCGAGGAGGTGACGGTAGGTGAGCAACGAGTACATATTGGTAACG 598
||||||||||| ||||||||||| | |||||| ||| || | | |||||||||||||||
Sbjct 690 TGCACATGGATTTATGCGAGGAGGAGCCGGTAGATGAACAGCAATTACATATTGGTAACG 749
Query 599 AGAAGAAACCCA-TGGATGAGCAGCAAGTGCATATTGGT 636
|||| |||||| || ||||||| || ||||||||||||
Sbjct 750 CGAAGGAACCCACTG-ATGAGCAACATGTGCATATTGGT 787
Score = 863 bits (467), Expect = 0.0
Identities = 617/686 (90%), Gaps = 23/686 (3%)
Strand=Plus/Plus
Query 573 TGAGCAACGA-GTACATATTGGTAACGAGAAGAAACCCATGGATGAGCAGCAAGTGCATA 631
|||||||| | || |||||||||||||||||| || |||| |||||||| ||||||||||
Sbjct 766 TGAGCAAC-ATGTGCATATTGGTAACGAGAAGGAATCCATTGATGAGCAACAAGTGCATA 824
Query 632 TTGGTTTGGAACAAAACATAAAAGAGAAGGATAAAGTAATTGCTATCGACGACGAAGATG 691
|||||||||||| ||||| ||| |||||||||||||||||||| |||||||| |||||||
Sbjct 825 TTGGTTTGGAACTAAACAGAAACGAGAAGGATAAAGTAATTGCCATCGACGATGAAGATG 884
Query 692 AGCCAATGCACACTAATGATAAAGGTGAAGTAATTGTGATCGATGACGATACTGAGAGTG 751
||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 885 AGCCAATGCACACCAATGAAAAAGGTGAAGTAGTTGTGATTAATGACGATACTGAGAGTG 944
Query 752 ATCAAGACACAACC---GCT-GAACC-CAT-T---A---ACAACGGTAATACTACTGATG 799
|||||| ||||||| | | | ||| | | | |||||||||||||||| ||||
Sbjct 945 ATCAAGGCACAACCAGTGATGGGACCTTTTCTCCAAGGCACAACGGTAATACTACCGATG 1004
Query 800 AG---ACCTTTTCTCCAAGCTCTAGAAGATCTCCAAAGGATGCACGTGTAAAATGTACAA 856
|| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1005 AGACCACCTTTTCTCCAAGCTCTAGAAGATCTCCAGAGGATGCACATGTAAAATGTACAA 1064
Query 857 ACGATGGAACCTGGTTAATCAGTGGGAGCGATGATGAGTCAGATATGGTTAAAGATCCAG 916
| |||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1065 AAGATGGAACCTGGTTAATCAGTGGGAGCGATGATGAGTCAG--A----TAAAGATCCAC 1118
Query 917 CCTCGATCAAGAAAAATCCAAACACTGACTTGAACCTTCTTCCTTCGAGCTCCCCAACAA 976
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1119 CCTCGATCAAGAAAAATCCAAACACTTACTTGAACCTTCTTCCTTCGAGCTCCCGAACAA 1178
Query 977 GACCGGAGAATGTATGCTGGAAATGTGAGAAAGAAGGAACATTATTGATATGTAGCAAAA 1036
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||
Sbjct 1179 GACCGGAGAATGTATGCTGGAAGTGTGAGAAAGAAGGAACGTTATTGATTTGTAGCAGAA 1238
Query 1037 GCGAGTGTGCAACAAAAGTTCACAAGGAATGTTTGAATTGTCCGGTTAACGTTGATGAAG 1096
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1239 GCGAGTGTGCAGCAAAAGTTCACAAGGAGTGTTTGAATTGTCCGGTTAACGTTGATGAAT 1298
Query 1097 ATGGGAACTTTCTCTGCCCTCTGTGCTGGTATGACCGAGTCGCCATGGAGTACCATGAAT 1156
| |||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 1299 ACGGGAACTTTCTCTGCCCTCTGTGCTGGTATGACCGACTCGCAATGGAGTATCATGAAT 1358
Query 1157 CGAAGAGGTTGATTGGCGGCGCCAAGAGAAGATTGGTGAAGTGTTTCCCGGTACTTTCAA 1216
| ||| ||||||| || |||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1359 CTCAGAAGTTGATTAGCTGCGCAAAGAGAAGATTGGTGAAGTGTTTCCCGGTGCTTTCCA 1418
Query 1217 TAAGAAGCAAGAGACTCAAGTGATGA 1242
||||||||||||||||||||||||||
Sbjct 1419 TAAGAAGCAAGAGACTCAAGTGATGA 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5