BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471668
Length=2135
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14780.1 | Symbols: | MAC/Perforin domain-containing protei... 3280 0.0
> AT1G14780.1 | Symbols: | MAC/Perforin domain-containing protein
| chr1:5090990-5094152 FORWARD LENGTH=2193
Length=2193
Score = 3280 bits (1776), Expect = 0.0
Identities = 1991/2096 (95%), Gaps = 10/2096 (0%)
Strand=Plus/Plus
Query 24 CGGAGGAGATGTAATCGAAACGGCGGTTAAGAGTCTTGGGAAAGGGTTCGATTTGACGGC 83
||| ||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 42 CGGCGGAGATGTAATTGAGACGGCGGTTAAGAGTCTTGGCAAAGGTTTCGATTTGACGGC 101
Query 84 GGATTTCCGGTTGAAATACTGCAAAGACGGCGACGGCGCAGCCGGAGATGACAGGTTGGT 143
||||||||||||||||||||| ||||||||||||||| | |||||||||||||| |||||
Sbjct 102 GGATTTCCGGTTGAAATACTGTAAAGACGGCGACGGCTCCGCCGGAGATGACAGATTGGT 161
Query 144 TGTCCTTGACCAAACTCAAAACAGAGAATTGCATATTCCTGGTTTCGGAGTTTTTCAAAA 203
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 162 TGTGCTTGACCAAACTCAAAACAGAGAATTGCATATTCCTGGTTTCGGTGTTTTTCAAAA 221
Query 204 TGTCTCCGCCGATATAAACTGCGACAAAGGAGAACGAACTCGATTCCGTTCGGACATTCT 263
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 222 TGTCTCCGCCGATATAAACTGCGACAAAGGAGAACGAACTCGATTCCGTTCCGACATTCT 281
Query 264 CGACTTCAACAAGATGTCGGAGTATTTTAACCAGAGGTCGTCGGTGACCGGAAAAATACC 323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TGACTTCAACAAGATGTCGGAGTATTTTAACCAGAGGTCGTCGGTGACCGGAAAAATACC 341
Query 324 GTCGGGAAATTTTAACGCGACGTTCGGGTTTCAAAGCGGGTCATGGGCAACAGACG-CGT 382
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 342 GTCGGGAAATTTCAACGCGACGTTCGGGTTTCAAAGCGGGTCATGGGCGACAGACGCCG- 400
Query 383 CAAACGTTAAATCTTTAGGTCTTGACGCTTCTGTTGTAACGCTATTTAATCTCCATATCC 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 401 CAAACGTTAAATCTTTAGGTCTTGACGCTTCTGTTGTAACGCTATTTAATCTCCACATAC 460
Query 443 ACAATCCCAATCGTTTGCGTCTCACTGATCGCGTTCGAAACGCAGTTCCGTCTTCCTGGG 502
||||||| ||||||||||| |||||||| ||||| |||||||||||||| || || ||||
Sbjct 461 ACAATCCTAATCGTTTGCGGCTCACTGACCGCGTCCGAAACGCAGTTCCTTCATCTTGGG 520
Query 503 ACCCACAATTATTGGCTAGGTTTATAGAGAGGTATGGGACACACGTAATAACTGGAGTGA 562
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 521 ACCCACAATTATTGGCTAGGTTTATAGAGAGGTATGGAACACACGTAATAACAGGAGTGA 580
Query 563 GCGTAGGAGGACAAGACGTGGTAGTTGTGAGGCAAGACAAGTCATCCGATCTCGACAACG 622
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 581 GCGTAGGAGGACAAGACGTGGTAGTTGTGAGGCAAGACAAGTCATCTGATCTCGACAACG 640
Query 623 ACCTCCTCCGTCACCATCTCTATGATCTCGGCGACCAATTGTTTACCGGCTCTTGCCTTC 682
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 641 ACCTCCTCCGTCACCATCTCTATGATCTTGGCGACCAATTGTTTACCGGCTCTTGCCTTC 700
Query 683 TCTCCACACGCCGGCTCAATAAGGCCTATCACCACTCACACTCTCAGCCCAAGTTTCCGG 742
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 701 TCTCTACACGCCGGCTCAATAAGGCCTATCACCACTCACACTCTCAACCCAAGTTTCCGG 760
Query 743 AGGCTTTCAACGTCTTTGATGACAAACAAACGGTTGCTTTCAATAATTTCTCGATAAATT 802
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 761 AGGCTTTCAACGTCTTTGATGACAAACAAACGGTTGCTTTCAACAATTTTTCGATAAATT 820
Query 803 CCCAAAATGGAATAACGGTTATATGTGCAAAAAGAGGAGGCGACGGAAGAGCAAAGAGCC 862
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 821 CTCAAAATGGAATAACGGTTATATGCGCCAAAAGAGGAGGCGACGGAAGAGCAAAGAGCC 880
Query 863 ATAGCGAATGGCTAATAACAGTTCCGCAAAATCCCGACGCGATCAATTTCAACTTTATTC 922
|||||||||||||||||||||| ||| | || || |||||||||||||||||||||||||
Sbjct 881 ATAGCGAATGGCTAATAACAGTCCCGGACAAGCCTGACGCGATCAATTTCAACTTTATTC 940
Query 923 CGATCACATCACTCCTTAAAGACGTCCCAGGCTCTGGTCTTCTCGCTCACGCCATGTCTC 982
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 941 CGATCACATCACTCCTTAAAGACGTCCCTGGCTCTGGTCTTCTCTCTCACGCCATGTCTC 1000
Query 983 TCTACCTCAGATATAAGCCGCCGTTAATGGACCTACAATATTTCTTGGACTTCTCTGGGC 1042
||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1001 TCTACCTAAGATACAAGCCGCCGTTAATGGACCTACAATACTTCTTGGACTTCTCTGGGC 1060
Query 1043 CAAGAACATGGGCTCCGGTCCATAACGACCTTCCGTTTGGCGCGGCGCCAAATATGGCTT 1102
||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1061 CAAGAGCATGGGCTCCGGTCCATAACGACCTTCCATTTGGCGCGGCACCAAATATGGCTT 1120
Query 1103 CGGCATATCCAGCTCTTCACATCAACTTCATGGGTCCCAAACTATACGTTAATACCACTC 1162
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CGGCCTATCCAGCTCTTCACATCAACTTCATGGGTCCCAAACTATACGTTAATACCACTC 1180
Query 1163 CCGTGACTAGCGAGAAGAATCCAGTAACCGGAATGCGATTGTTCCTTGAAGGCAAGAAAT 1222
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1181 CCGTGACTAGCGAGAAGAATCCAGTAACCGGAATGCGATTTTTCCTTGAAGGCAAGAAAT 1240
Query 1223 GCAATAGGCTTGCTATACACTTACAACACCTAGAAAATACAAGAACTACAGTTGGGGAAA 1282
|||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||
Sbjct 1241 GCAATAGGCTGGCTATACACCTACAACACCTAGACAACACAAGAACTACGGTTGGGGAAA 1300
Query 1283 AGATCACCGACGAACATATATGGAGAGGCTCCGATCAAATCACCGATAATGATCGCTACT 1342
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1301 AGATCACTGACGAACATATATGGAGAGGCTCCGATCAAATCACCGACAATGATCGCTACT 1360
Query 1343 TCGAATCTTTAAACGGTAAGAAATTCTCACACGTGTGTACGGCTCCAGTGAAGTATGACC 1402
||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1361 TCGAACCTTTAAACGGTAAGAAATTCTCACACGTGTGTACGGTTCCAGTGAAGTACGACC 1420
Query 1403 CAAACTGGATCACAACAGCAAGCAATCACAAGTCCCAAAACGACGTCGCTTTCATCGTCA 1462
|||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1421 CAAACTGGATCAAAACAACAAGCAATCACAAGTCCCAAAACGACGTAGCTTTCATCGTCA 1480
Query 1463 CCGGAGCACAACTCGAAGTGAAGAAACATGGCTCAAAATCCGTTCTCCATCTGCGTCTCC 1522
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||
Sbjct 1481 CCGGAGCACAACTCGAAGTGAAAAAACACGGCTCAAAATCCGTTCTCCATCTCCGACTCC 1540
Query 1523 GTTTCACCAAAGTCTCTGATCACTACGTCGTTCAGAATAGTTGGGTTCATGGACCAACCG 1582
||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1541 GTTACACTAAAGTCTCTGATCATTACGTCGTTCAGAATAGTTGGGTTCATGGACCAATTG 1600
Query 1583 GGACTTCTCAGAAATCGGGAATCTTCTCTTCCATGAGCATGCCGTTGACTAGTGGGAGTG 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 GGACTTCTCAGAAATCGGGAATCTTCTCTTCCATGAGCATGCCGTTGACTAGTGGGAGTG 1660
Query 1643 TTCATCATAATATGATCCAAAAAGACAAAAACGAAGTCGTTTTGGATTCAGGTGTCTTCC 1702
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1661 TTCATCATAATATGATCCAAAAAGACAAAAACGAGGTCGTTTTGGATTCAGGTGTCTTCC 1720
Query 1703 CCGGAGGACCTCCGGTGCCGGCGAATAACAAGATAGTGAAATTCGTGGATCTTTCGCAGT 1762
| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1721 CTGGTGGACCTCCTGTGCCGGCGAATAACAAGATAGTGAAATTCGTCGATCTTTCGCAGT 1780
Query 1763 TATGTCGAGGACCTCAACATAGTCCTGGTCATTGGTTAGTCACTGGAGTGAGGCTTTACT 1822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1781 TATGTCGAGGACCTCAACATAGTCCTGGTCATTGGTTAGTCACTGGAGTGAGGCTTTACT 1840
Query 1823 TGGACAAGGGCAAACTTTGCTTACACGTCAAGTTTGCTCTGCTACATCGCCAACGTCTTC 1882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 TGGACAAGGGCAAACTTTGCTTACACGTCAAGTTTGCTCTGCTACATCGCCAACGTCTTC 1900
Query 1883 TTGTCTCTTCTTGAAGAGAATATAACATTATTTTTG-ATA--CAATTACTTTTCtttttt 1939
||||||||||||||||| ||||||||||||||||| ||| ||| ||| ||||||||||
Sbjct 1901 TTGTCTCTTCTTGAAGAAAATATAACATTATTTTTTTATATACAAGTACGTTTCTTTTTT 1960
Query 1940 tGGTTTCCTCCAAAATTGCGATATACAAAGGGTGATTTCTTGATTTTGGAGTGTGTGTAT 1999
|| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
Sbjct 1961 TGTTTTCCTCCAAAATTGCGACATACAAAGGATGATTTCTTGATTTTGGAGTGTGTG-A- 2018
Query 2000 ATATTATAGAGGTTGTGTATGTGTTTTGATGGGATTGGTCCTTTAAGAGAAATTGTTTGT 2059
|||| |||||| | ||||||||| ||| |||||||||| || || ||||||||||||| |
Sbjct 2019 ATAT-ATAGAGCT-GTGTATGTGCTTTAATGGGATTGGCCCATTCAGAGAAATTGTTTAT 2076
Query 2060 GTACATACATATGTTGAGAGGTTGAAAATAGAAACTCTTAGTTATAGCAAGttttt 2115
|||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||
Sbjct 2077 GTACATACATATGTTGAGAGGTCGAACATAGAA-CTCTTAGTGGTAGCAAGTTTTT 2131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105872949405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5