BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471677
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14860.1 | Symbols: atnudt18, NUDT18 | nudix hydrolase homol... 1229 0.0
> AT1G14860.1 | Symbols: atnudt18, NUDT18 | nudix hydrolase homolog
18 | chr1:5124742-5126151 FORWARD LENGTH=1128
Length=1128
Score = 1229 bits (665), Expect = 0.0
Identities = 842/922 (91%), Gaps = 34/922 (4%)
Strand=Plus/Plus
Query 1 AACGCTTTTTGTCTCATCCCAAATCttttttttCACTCACCCCATCGTAACTTCATTAAT 60
|||||||||||||| ||| |||||| |||| ||||||||||||||| |||||||| |||
Sbjct 1 AACGCTTTTTGTCTTATCTCAAATC-TTTTGTTCACTCACCCCATCATAACTTCA-TAAC 58
Query 61 TCCTATCCAATCTTTTCTTATAGTTAACCACTCTCAAACAATTCTTAACTTCGATCTCAT 120
||||||||||||||| | | || |||| | | ||||||||||||||||||||||||| |
Sbjct 59 TCCTATCCAATCTTTGC-T-TA--TAACTATTATCAAACAATTCTTAACTTCGATCTC-T 113
Query 121 AACCTGCAAAAACATTCGTTACACTTGTTCAGATCCT-CTTCCCTTTTAGCCGTCC-AAG 178
||||||||||||||||| |||||| | |||||||||| |||||| |||||||| || |||
Sbjct 114 AACCTGCAAAAACATTCATTACAC-TCTTCAGATCCTCCTTCCC-TTTAGCCG-CCAAAG 170
Query 179 CAAAACCGTGATCTCTCTCTCTTCTTTTATACAGTCAAAAATTAGATTCAGATTCTTCAA 238
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 CAAAACCGTCATCGATCTCTCTTCTTTTATACAGTCAAAAATTAGATTCAGATTCTTCAA 230
Query 239 GAACTCTGTTTTTCTAGTAGCATGGTTTGTTTGGTCTCTCGTACGGGTCGTCAATCCCAA 298
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 231 GAACTCTGTTTTTCTAGTAGCATGGTGTGTTTGGTCTCCCGTACGGGTCGTCAATCCCAA 290
Query 299 AGATACAACAAGGGACGCCGTCAAGTCGTCGGGTGTATTCCATACAGACTCAAGATTTCG 358
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 AGATACAACAAGGGACGGCGTCAAGTCGTCGGGTGTATTCCATACAGACTCAAGATTTCG 350
Query 359 AGCGATGGCACAATTA-CTGACGAATTTGAAGTTCTTGTTATATCATCACAGAAGGGTCA 417
|| ||||||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 351 AGTGATGGCACAATTAGC-GACGAATTTGAGGTTCTTGTTATTTCATCACAAAAGGGTCA 409
Query 418 CGCTCTGATGTTCCCAAAGGGTGGTTGGGAGCTTGATGAAACTATAGAAGAAGCTGCATC 477
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct 410 CGCTCTGATGTTCCCAAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCGTC 469
Query 478 AAGAGAATCTCTAGAAGAAGCTGGAGTTGTTGGAAACGTTGAGAGACAACTTGGAAAATG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AAGAGAATCTCTAGAAGAAGCTGGAGTTGTTGGAAACGTTGAGAGACAACTTGGAAAATG 529
Query 538 GGATTTCTTAAGCAAAAGCAGAGGAACATTCTATGAAGGATTAATGTTCCCAATGCTTGT 597
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 530 GGATTTCTTAAGCAAAAGCAAAGGAACATTCTATGAAGGATTCATGTTCCCAATGCTTGT 589
Query 598 GAAAGAAGAGCTTGAGCTTTGGCCTGAACAACATCTTCGTCGAAGAATTTGGATGAAAGT 657
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 590 GAAAGAAGAGCTTGAGCTTTGGCCTGAACAACATCTTCGTCAAAGAATTTGGATGAAAGT 649
Query 658 GGATGAAGCAAGAGAAACTTGTAGAGATTGGTGGATGAAGGAAGCTTTAGATGTTTTGGT 717
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 650 TGATGAAGCAAGAGACGCTTGTAGAGATTGGTGGATGAAGGAAGCGTTAGATGTTTTGGT 709
Query 718 CCAAAGGCTTTCTTCACCATCATTGAAGCCTGTGGAAGAAGACAAGA-CCATTCCACTGA 776
|||||||||||||| || ||||||||||||| ||||||||||| ||| || |||||||||
Sbjct 710 CCAAAGGCTTTCTTTACTATCATTGAAGCCTATGGAAGAAGACGAGAACC-TTCCACTGA 768
Query 777 TCTCTATCTGCTGA--AAAAA-----CAATCAGATGTGTTCTTGATCACTTTGTAAATAA 829
||||||||| |||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct 769 TCTCTATCTACTGATCAAAAAAAAAACAATCAGACGTGTTCTTGATCACTTTGTATATAA 828
Query 830 CATCTCACGCCT---TT-CCATAAAGAGTCTACAA-ACTAA---AGGAAAAGTATGTACA 881
||||| |||||| || |||| |||||||||| ||| ||||||||||||||||
Sbjct 829 CATCTTACGCCTGCCTTTCCATGAAGAGTCTACTCTACTGCTGCAGGAAAAGTATGTACA 888
Query 882 GATCACAAATTTTAGGTGTGAA 903
| | | || ||| |||||||||
Sbjct 889 G-TGA-AACTTT-AGGTGTGAA 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5