BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471683
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14950.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 854 0.0
> AT1G14950.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:5157336-5158269 REVERSE
LENGTH=845
Length=845
Score = 854 bits (462), Expect = 0.0
Identities = 526/557 (94%), Gaps = 4/557 (1%)
Strand=Plus/Plus
Query 1 ATTGGCATAAACACTCTCAAAGACAAGTAATCAAAAGCT-TTTTAGAAGCTCCATCATGG 59
||| ||||||||||| ||||| ||||||||||||||| | ||||||||||| ||||||||
Sbjct 71 ATTTGCATAAACACTTTCAAAAACAAGTAATCAAAAG-TATTTTAGAAGCTTCATCATGG 129
Query 60 CGACGTCAGGAACATACGTGACAGAAGTTCCTCTGAAAGGGTCGGCGAAGAACCACTACA 119
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 130 CGACGTCAGGTACATACGTGACAGAAGTTCCTCTGAAAGGGTCAGCGAAGAACCACTACA 189
Query 120 AGAGGTGGAAGAGCGAAAACCAACTCTTCCCGGAAGCCATTGGCCATCACATCCAAGGTG 179
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 190 AGAGGTGGAAGAGCGAAAACCAACTCTTCCCTGACGCCATTGGCCATCATATCCAAGGTG 249
Query 180 TCACCGTTCACGAGGGCGACTGGGACTCCCACGGGGCCATTAAGTCGTGGAACTACACAT 239
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 250 TCACCGTTCACGAGGGCGACTGGGACTCCCACGGGGCCATCAAGTCCTGGAACTACACAT 309
Query 240 GCGATGGGAAGCAAGAGGTGTTCAAGGAGAAGAGGGAGTTAGACGACGAGAAGATGGCTG 299
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 310 GCGATGGGAAGCAAGAGGTGTTCAAGGAGAAGAGGGAGTTAGACGACCAGAAGATGGCGG 369
Query 300 TGACGTTTAGAGGGCTGGATGGTCACGTGATGGAGCAGCTTAAGGTGTATGATGTCATCT 359
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 370 TGACGTTTAGAGGGCTGGATGGTCATGTGATGGAGCAGCTTAAGGTGTATGACGTCATCT 429
Query 360 TCCAGTTCATCCCCAAGTCTCAGGAAGGTTGCGTCTGCAAAGTCACTATGATTTGGGAGA 419
|||| ||| |||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 430 TCCAATTCGTCCCTAAGTCTCAGGAAGGTTGCGTCTGCAAAGTCACTATGTTTTGGGAGA 489
Query 420 AGCGCTACGAAGACTCTCCGGAGCCAATCAAGTACATGAAGTTCGTCACGAGCTTGGCTG 479
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 490 AGCGCTACGAAGACTCTCCAGAGCCCATCAAGTACATGAAGTTCGTCACGAGCTTGGCTG 549
Query 480 CTGATATGGACGACCACATTCTCAAGAACCAGAACAAGGCGTAATCATCATAGTGATCAT 539
|||| ||||| |||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 550 CTGACATGGATGACCACATTCTCAAGAACCAGAGCAAGGCTTAATCATCATAGTGACCAT 609
Query 540 -CTTTAAGAAGATAAAA 555
||| | ||||||||||
Sbjct 610 ACTT-ATGAAGATAAAA 625
Score = 154 bits (83), Expect = 1e-36
Identities = 115/130 (88%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 556 TGTGTCTCTTTTGTGTTTGTCTCGTAGATGGGTGATCATCCGCCTCCTTTTCTTGTGTAC 615
||||| || ||||||||||||| ||| || | ||| | |||||||||| ||||||||||
Sbjct 657 TGTGTGTCGTTTGTGTTTGTCTTGTACAT-GATGA--AACCGCCTCCTTGTCTTGTGTAC 713
Query 616 ATTTTATGCTGATAATAATGGCGGTTTGTCTTGTAAGCTTATGTATGTATCATCTCGGTC 675
||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |||
Sbjct 714 ATTTTATGCTGATAATAATGGCGGTACGTCTTGTAAACTTATGCATGTATCATCTCTGTC 773
Query 676 TTTGATGATT 685
||||||||||
Sbjct 774 TTTGATGATT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33154537020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5