BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471684
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14960.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 804 0.0
AT1G14940.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 279 2e-74
> AT1G14960.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:5159199-5160083 REVERSE
LENGTH=688
Length=688
Score = 804 bits (435), Expect = 0.0
Identities = 553/608 (91%), Gaps = 15/608 (2%)
Strand=Plus/Plus
Query 1 AAAAAACGATCGAAAGCTAATTAATTCATCAATGGCGATGTCAGGAACATACGTGACGGA 60
||||||| ||| |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 61 AAAAAACAATCCAAAGCTAATTGATTCATCAATGGCGATGTCGGGAACATACGTGACGGA 120
Query 61 TGTGCCTCTGAAGGGATCGGCGGAGAAACACTACAAGAGGTGGAGGAGCGAGAACCATCT 120
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 121 TGTGCCTCTTAAGGGATCGGCGGAGAAACACTATAAGAGGTGGAGGAGCGAGAACCACCT 180
Query 121 CACCCCTGACGCCATTGGCCACCTCATCCAAGGTGTCACCGTCCACGAAGGCGATTGGGA 180
| |||||| || || ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 181 CGTCCCTGAAGCTATCGGCCACCTCATCCAAGGTGTCACCGTCCATGACGGCGATTGGGA 240
Query 181 CTCACACGGAACCATCAAAATATGGAACTACACTCGTGATGGGAAAGAGGAAGTATTGAA 240
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCTCACGGCACCATCAAAATCTGGAACTACACTCGTGATGGGAAAGAGGAAGTATTGAA 300
Query 241 GGAGAGGATAGAGATCGACGACGAGAATATGGCGGTAACGATTAATGGGCTCGATGGTCA 300
||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 301 GGAGAGGATAGAGATGGACGACGAGAATATGGCGGTGACGATCAATGGACTCGATGGTCA 360
Query 301 CGTCATGGAGTTGCTTAAGGTGTATGTTACAACCTTCCACTTCATCCCCGAGTTCGAAGA 360
|||||||||| | || ||||| ||||| || || || || ||||||||||||| | ||||
Sbjct 361 CGTCATGGAGGTCCTCAAGGTTTATGTCACGACGTTACATTTCATCCCCGAGTCCAAAGA 420
Query 361 TGGCTGCGTCTGCAAAATTACTATGATTTGGGAGAAACGCACCGAAGACTCCCCAGAGCC 420
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 421 TGGCTGCGTCTGCAAAATTACTATGGTCTGGGAGAAACGCACCGAAGACTCCCCAGAGCC 480
Query 421 CATCGAGTTCATGAAGTTTGTCGAGA-AGATGATTGCTGACATGGACGACCACATCCTCC 479
|||||| ||||||||||| || || | ||||||||||| |||||||||||||||||||||
Sbjct 481 CATCGAATTCATGAAGTTCGTGGA-ACAGATGATTGCTCACATGGACGACCACATCCTCC 539
Query 480 AAAACCAGGAATGATGGATCGATGCTTAATCATCATCACATCCTCCTTTTA---AT-TT- 534
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 540 AAAACCAGGAATGATGGATCGATGCTTAATCATCATCACATCCTCCTTTTATTTATCTTA 599
Query 535 ------GTGT--CCATCTTGTACATGATATTAATATCGTCATGGTGTTGTATGTCCAACG 586
|||| |||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 ATTAATGTGTGTCCATCTCGTACATGATATTAATATCATCATGGTGTTGTATGTCCAACG 659
Query 587 TTTATTTA 594
||||||||
Sbjct 660 TTTATTTA 667
> AT1G14940.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:5154537-5155563 REVERSE
LENGTH=757
Length=757
Score = 279 bits (151), Expect = 2e-74
Identities = 361/460 (78%), Gaps = 24/460 (5%)
Strand=Plus/Plus
Query 31 AATGGCGATGTCAGGAACATACGTGACGGATGTGCCTCTGAAGGGATCGGCGGAGAAACA 90
|||||| ||||| |||||||||||| |||| || || || ||||||||||||||||||||
Sbjct 51 AATGGCAATGTCTGGAACATACGTGGCGGAGGTACCGCTTAAGGGATCGGCGGAGAAACA 110
Query 91 CTACAAGAGGTGGAGGAGCGAGAACCATC-TCACCCCTGACGCCATTGGCCACCTCATCC 149
|||||||| |||||||| ||| ||||| | || || || ||| | ||||||| |||||
Sbjct 111 CTACAAGAAGTGGAGGAACGAAAACCA-CGTCTTCCAGGATGCCGTCGGCCACCACATCC 169
Query 150 AAGGT-GTCACCGTCCACGAAGGCGATTGGGACTCACACGGAACCATCAAAAT-ATGGAA 207
||||| | ||| | || || || || |||||||| ||||| |||||| | | ||||||
Sbjct 170 AAGGTTG-CACTATGCATGACGGTGACTGGGACTCCCACGGCTCCATCAGA-TCATGGAA 227
Query 208 CTA-CAC-TCGTGATGGGAAAGA-GGAAGTATTGAAGGAGAGGATAGAGATCGACGACGA 264
|| ||| | | ||||| |||| |||||| || ||||||| || |||||| ||||||||
Sbjct 228 -TATCACAT-GCGATGG-AAAGCCGGAAGTCTTCAAGGAGAAGAGAGAGATAGACGACGA 284
Query 265 GAATATGGCGGTAACGATT-AATGGGCTCGATGGTCACGTC-ATGGAGTTGCTT-AAGGT 321
|| |||||| | ||| || || ||||| || ||||| | | |||||| | | |||
Sbjct 285 AAAGATGGCGTTGACG-TTGAAAGGGCTAGAGGGTCAAG-CGATGGAGAAG-TACAAGAA 341
Query 322 GTATGTTACAACCTTCCACTTCATCCCCGAGTTCGAAG-ATGGCTGCGTCTGCAAAATTA 380
||||| | || ||| ||||| ||| ||| ||||| | ||||||||||||||||| |
Sbjct 342 GTATGAGGTTATCTACCAGTTCATTCCCAAGT-CGAAGGAAGGCTGCGTCTGCAAAATCA 400
Query 381 CTATGATTTGGGAGAAA-CGCACCGAAGACTCCCCAGAGCCCATCGAGTTCATGAAGTTT 439
|| | || ||||| ||| |||| |||| ||||||| || |||||| | | ||||||||||
Sbjct 401 CTCTCATATGGGA-AAAGCGCAACGAAAACTCCCCCGAACCCATCAACTACATGAAGTTT 459
Query 440 GTCGAGAAGATGA-TTGCTGACATGGACGACCACATCCTC 478
||| ||| | | | |||||||||||||||||||| |||||
Sbjct 460 GTCAAGA-GCTTAGTTGCTGACATGGACGACCACGTCCTC 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5