BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471686
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14980.1 | Symbols: CPN10 | chaperonin 10 | chr1:5165628-516... 861 0.0
> AT1G14980.1 | Symbols: CPN10 | chaperonin 10 | chr1:5165628-5166745
REVERSE LENGTH=690
Length=690
Score = 861 bits (466), Expect = 0.0
Identities = 613/678 (90%), Gaps = 34/678 (5%)
Strand=Plus/Plus
Query 1 CCCC-AATTAAAACCTCAGAAACCCTAGAAAATCCCGATTCATC-A-TCCGAGAGAAGAA 57
|||| |||||||| ||||||||||||||||||| |||||||||| | | ||||||||||
Sbjct 22 CCCCAAATTAAAAACTCAGAAACCCTAGAAAATTCCGATTCATCAACTGAGAGAGAAGAA 81
Query 58 GAATTGAGAAATGATGAAGCGTCTCATCCCAACGTTCAACCGCATCTTGGTGCAGAGAGT 117
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 82 GAATTGAGAAATGATGAAGCGTCTGATCCCAACGTTCAACCGCATCTTGGTGCAGAGAGT 141
Query 118 CATCCAGCCTGCAAAAACCGAAAGCGGCATTCTCCTACCTGAGAAATCCTCCAAGCTGAA 177
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CATCCAGCCCGCTAAAACCGAAAGCGGCATTCTCCTACCTGAGAAATCCTCCAAGCTGAA 201
Query 178 CTCAGGCAAGGTGATAGCTGTTGGACCTGGATCAAGGGATAAGGACGGGAAATTGATTCC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 CTCAGGCAAGGTGATAGCTGTTGGACCTGGATCAAGGGATAAGGACGGGAAATTGATTCC 261
Query 238 GGTCTCTGTGAAGGAAGGCGACACTGTTCTTCTTCCAGAGTACGGTGGTACCCAGGTCAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 262 GGTCTCTGTGAAGGAAGGCGACACTGTTCTTCTTCCAGAGTACGGTGGTACACAGGTCAA 321
Query 298 GCTCGGCGAGAACGAGTACCATCTCTTCCGGGACGAGGATGTCTTGGGAACATTGCACGA 357
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 322 GCTCGGCGAGAACGAGTACCATCTCTTCCGGGACGAGGATGTTTTGGGAACTTTGCACGA 381
Query 358 GGATTAAAAAGGCTAAAG-TTGGCTAACTCAACCACGAAGGTTCATGTTGGCGTGCGTTT 416
||||| |||||||||| | ||| | |||| |||||||| |||||||||||| || |||
Sbjct 382 GGATTGAAAAGGCTAA-GCTTGCC-AACTTAACCACGAGGGTTCATGTTGG--TG--TTT 435
Query 417 GTGTTATGTCTGGAGGAGTTATTTTATAAGTTAGTTTATCTTGAAGATGTGGTTGGACTT 476
|||||||| |||| ||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 436 GTGTTATGA--GGAGAAGTCATTT-ATAAATTAGTTTATCTTGAAGATGTGGTTGGACTT 492
Query 477 TGT---CGTTTATCATTGAATTTATCTTTAAGAAT-TATCTTTGAATTCTT-CA--T--- 526
||| ||||||||||||||| || ||||| ||| | |||||||||| || || |
Sbjct 493 TGTTGTCGTTTATCATTGAATCTACCTTTATGAACCTGTCTTTGAATTTTTACAAATGGG 552
Query 527 CA--A-TCATATGGGTAACCCAAGTGTTGCATCTTCTGATTCTAATACTTTGTGCTTTTC 583
|| | ||| |||| |||||||||||||||||||||| | | | ||||||||||||
Sbjct 553 CATCAATCACATGGATAACCCAAGTGTTGCATCTTCT----C-A-T--TTTGTGCTTTTC 604
Query 584 CATAATCTGTTGATGCTTTTCCTCTACGTTTAGACAGCAACTTCAATAGCCAATGTAGAC 643
| |||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 605 CGTAATCTGTGGATGCTTTTCGTTTACGTTTAGGCAGCAACTTCAATAGCCAATGTAGAC 664
Query 644 GATAGCTTAGTTGACTTT 661
||||||||||||||||||
Sbjct 665 GATAGCTTAGTTGACTTT 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5