BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471687
Length=511
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14990.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 536 7e-152
> AT1G14990.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages. | chr1:5167031-5168264
REVERSE LENGTH=835
Length=835
Score = 536 bits (290), Expect = 7e-152
Identities = 352/382 (92%), Gaps = 4/382 (1%)
Strand=Plus/Plus
Query 1 TTTGGTAAAGTGATCACAAGGTGTTCGACATAATACCTGAAAGAACTTCC-ATAGGGGTG 59
|||||||||||||||||||||||||||| ||||||||||||||| |||| | ||| |||
Sbjct 52 TTTGGTAAAGTGATCACAAGGTGTTCGATATAATACCTGAAAGAGTTTCCGA-AGGTGTG 110
Query 60 AAGATGACGGTCTTGGATGTTTG-TGCAGAGGTTTTAAAGATCCAGAAGCTACGGCGTTT 118
||||||| | ||||||||||||| | |||||||| ||||||||||||||||||| ||
Sbjct 111 AAGATGATGATCTTGGATGTTTGCT-CAGAGGTTATAAAGATCCAGAAGCTACGACGGGC 169
Query 119 TGTCTCTTACGCCGGATTCTACTGTTTCACTGCTGCTCTCACATTCTTCTATACGAACAA 178
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 170 TGTCTCTTACGCCGGATTCTACTGCTTCACTGCTGCCCTCACATTCTTCTATACAAACAA 229
Query 179 CACAACAAGAGCAGGATATTCCAGGGGCGATCAGTTTTATGCATCTTATCCTGCCGGCAC 238
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 230 CACAACAAGAGCAGGATATTCCAGGGGAGATCAGTTTTATGCATCTTACCCTGCTGGCAC 289
Query 239 TGAACTTCTAACCGACACGGCAAAGCTGTACAAAGCGGCGCTTGGGAATTGCTATGAATC 298
|||||| | |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 290 CGAACTTTTGACCGACACAGCTAAGCTGTACAAAGCGGCGCTTGGGAATTGCTATGAATC 349
Query 299 TGAGGATTGGGGTCCTGTCGAGTTCTGCATAATGGCTAAGCATTTTGAGCGCCAGGGAAA 358
||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 350 TGAAGATTGGGGTCCTGTTGAATTCTGCATAATGGCTAAGCATTTTGATCGCCAGGGAAA 409
Query 359 ATCTCCATACGTTTACCACTCC 380
||||||||||||||||||||||
Sbjct 410 ATCTCCATACGTTTACCACTCC 431
Score = 95.3 bits (51), Expect = 5e-19
Identities = 108/132 (82%), Gaps = 18/132 (14%)
Strand=Plus/Plus
Query 381 CAATACACGGCTCACCTTCTTTCTCAAGGCCAACTCGATGGAAGTGGCTAGTGGCG--AG 438
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 462 CAATACATGGCTCACCTTCTATCTCAAGGCCAACTCGATGGAAGTGGCTAGTGGCGCCAG 521
Query 439 CT-T-T--GT---A--T-----CC-AATCTTGTTATAGCAAAGGCGAACCCGGGTATCT- 482
|| | | || | | || ||||||||||||||||| |||| || |||||||
Sbjct 522 CTCTCTTTGTTTCAGCTTTGTGCCTAATCTTGTTATAGCAAATTCGAATCCTGGTATCTT 581
Query 483 GGAACATTTGTA 494
||||||||||||
Sbjct 582 GGAACATTTGTA 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24413795442
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5