BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471689

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15010.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   645    0.0  


> AT1G15010.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G01300.1); 
Has 71 Blast hits to 71 proteins in 13 species: Archae - 0; 
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 69; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5171207-5171742 
FORWARD LENGTH=536
Length=536

 Score =  645 bits (349),  Expect = 0.0
 Identities = 408/435 (94%), Gaps = 9/435 (2%)
 Strand=Plus/Plus

Query  1    ATGGAAACT-ATACTGATCATCTCCTCGTCGCCACTCAGGTTCCATCCATTGAGGACATC  59
            ||||||| | ||||||   ||||| || ||| ||||||||||||||||||||||||||||
Sbjct  9    ATGGAAA-TGATACTG---ATCTCGTCATCGACACTCAGGTTCCATCCATTGAGGACATC  64

Query  60   ACAAAAG-ATCGCCACCGGAACCAAGAGAAGACGAACCACCACCGTGTGTGCCGACTACT  118
            || |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct  65   AC-AAAGAATCGCCACCGGAACCAATAGAAGACGAACCACCACCGTGTGTGCAGACTACT  123

Query  119  ACAGAGGAGGAAGAACGGTGGACGAGAACATGGTGGTCCTTAGGAAAAGGATCCATGAGA  178
            ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct  124  ACAGAGGAGGAAGAACGGTGGACGAGAACATGGTGGTCCTTAGGAAACGAATCCATGAGA  183

Query  179  TGAAGATGGTTGAACGCAACTATGAACCTCCTTCTCATTGGATGCAATGGGAGAAACGTT  238
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  184  TGAAGATGGTTGAACGCAACTTTGAACCTCCTTCTCATTGGATGCAATGGGAGAAACGTT  243

Query  239  TATACTGCAACTACGACGCTACTATATGTGACGCGCTCTCTCTTCTCCAAACTTTTCTCA  298
            | ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct  244  TCTACTGCAACTACGACGCTACTATATGTGATGCACTCACTCTTCTCCAAACTTTTCTCA  303

Query  299  TGAACTCTCGTCCCAGCGTCGCGTTTGGAACGT-TGCTTCTTCTCCTCGTCAGCGTTCCC  357
            ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct  304  TGAACTCTCGTCCCAGCGTCGCGTTTGGAACGTGT-CTTCTTCTCCTCGTCAGCGTTCCC  362

Query  358  GTCTCCTCTGCCGTTTTTGCGTTTCGCATCCTTGATATAACTCTTTGGCTTTTGGACACC  417
            |||||||| ||||||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct  363  GTCTCCTCCGCCGTTTTTGCTTTTCGCATCCTTGATCTAGCTCTTTGGCTTTTGGACGCC  422

Query  418  GCTCACGTAGTATGA  432
            | |||||||||||||
Sbjct  423  GTTCACGTAGTATGA  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5