BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471694
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15040.1 | Symbols: | Class I glutamine amidotransferase-li... 2050 0.0
AT5G38200.1 | Symbols: | Class I glutamine amidotransferase-li... 159 5e-38
> AT1G15040.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr1:5179887-5181389 REVERSE LENGTH=1413
Length=1413
Score = 2050 bits (1110), Expect = 0.0
Identities = 1307/1403 (93%), Gaps = 9/1403 (1%)
Strand=Plus/Plus
Query 1 Caaataagaaagagagaattaagacataaacaagac-aaa-aagaaaaagagaattaaaa 58
||| |||||||||||| ||||||||||||||||||| ||| ||||| ||||| ||| |
Sbjct 4 CAATTAAGAAAGAGAGGATTAAGACATAAACAAGACAAAACAAGAAGAAGAG-ATT-TAT 61
Query 59 ttagtacataaaaatGGTGGTCGCTAATGATCTCTCGCCCAAGATTCACCCCAGAGTTCT 118
||| |||||||||||||| ||||| |||||||||||| ||||||||| ||||||||||||
Sbjct 62 TTATTACATAAAAATGGTTGTCGCCAATGATCTCTCGTCCAAGATTCTCCCCAGAGTTCT 121
Query 119 CATCGTCTCTCGTCGGACTCTCCGTAAGAACAAGTACGTGGACTTCGTAGGAGAATACCA 178
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 122 CATCGTCTCTCGTCGGACTCTCCGCAAGAACAAGTACGTGGACTTCGTAGGAGAATACCA 181
Query 179 TCTCGATCTCATTGTCTCCTCCGGTGCCGTCCCTGTCATCGTGCCTCGTGTCAATGGGAT 238
|||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 182 TCTCGATCTCATCGTCTCCTCCGGTGCCGTCCCTGTCATTGTCCCACGTGTCAATGGGAT 241
Query 239 CCATTCTATGCTCCAGAGCTTCGAGCCCATCCATGGCGTCCTTCTCTGCGAAGGAGAAGA 298
||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct 242 CCATTCTATGCTCCAGAGCTTCGAGCCTATTCATGGTGTCCTCCTCTGCGAAGGAGAAGA 301
Query 299 TGTAGATCCTTCTCTCTATGCCGACGCA-GAATCCTCAGGTCTCTCACCGGAAGACATGG 357
||| |||||||||||||| || |||| | |||| |||| ||||| || ||||||||||
Sbjct 302 TGTCGATCCTTCTCTCTACGCGGACG-ATGAATTATCAGACCTCTCGCCAGAAGACATGG 360
Query 358 AGGAGATCAAGAAGGTGCATGCAGGGGACATGACCATCGACCGAGAGAAAGACAGCATTG 417
||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 AGGAGATTAAGAAGGCGCATGCAGAGGACATGACCATCGACCGAGAGAAAGACAGCATTG 420
Query 418 AACTGACCCTAGCTAGACTCTGTCTTGAAAGAAACATTCCTTTCTTAGGCATTTGTCGTG 477
| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 AGCTGACTCTAGCTAGACTCTGTCTCGAAAGAAACATTCCTTTCTTAGGCATTTGTCGTG 480
Query 478 GCTCTCAGATTCTCAACGTTGCCGCAGGTGGAACTCTTTACCAAGACATCGACAAAGAAC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTCTCAGATTCTCAACGTTGCCGCAGGTGGAACTCTTTACCAAGACATCGACAAAGAAC 540
Query 538 TCGGAACTACAACAACGACGACTAAGCATATAGATTATGACAACTACGATGGGCACAGGC 597
|||||||||| | || ||||| || |||||||||||||||||||||||||||||||| |
Sbjct 541 TCGGAACTACGATGACAACGACAAATCATATAGATTATGACAACTACGATGGGCACAGAC 600
Query 598 ACGAGGCTAGAATCGTGGAGGAGACGCCGTTGCATACGCTGTTCAAGGAGATGGAGATAA 657
||||||||||||||||||||||||| ||||| |||| | ||||| |||||||||||||||
Sbjct 601 ACGAGGCTAGAATCGTGGAGGAGACTCCGTTACATAAGTTGTTCGAGGAGATGGAGATAA 660
Query 658 TGGTGAACTCGTATCACCATCAAGGTGTGAAGAGACTGGCGCAACGTTTTGCGCCCATGG 717
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||
Sbjct 661 TGGTGAACTCGTATCACCATCAAGGTGTGAAGAGACTGGCTCAACGTTTTGTGCCGATGG 720
Query 718 CTTACGCTCCTGATGGTTTGATTGAAGGATTTTATGATCCGAATCGCTATGATCCAAAGG 777
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 CTTATGCTCCTGATGGTTTGATTGAAGGATTTTATGATCCGAATCGATATGATCCAAAGG 780
Query 778 AAGGTCAATTCTTGATGGGTCTGCAGTTTCATCCCGAGAGGATGAGGCTTTCGGGCTCTG 837
||||||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 781 AAGGTCAGTTCTTGATGGGTCTGCAGTTTCATCCAGAGAGGATGAGGCTTCCAGGCTCTG 840
Query 838 ATGAGTTTGATTATCCAGGCTGCGCTTTAGTTTATCAGGAGTTTGTGAAAGCTGTGATCG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATGAGTTTGATTATCCAGGCTGCGCTTTAGTTTATCAGGAGTTTGTGAAAGCTGTGATCG 900
Query 898 CATTTCAGAAGAAACAAGTAAACGCAACACAGATGGAGATGAAGAGAAAGACAACGACGC 957
|||||||||||||||||||||||||||||||| | ||||||||||| ||||| || || |
Sbjct 901 CATTTCAGAAGAAACAAGTAAACGCAACACAGGTTGAGATGAAGAGGAAGACCACCACAC 960
Query 958 TCGTCAAAAGCTTCTCCCAAGCCGAGTTTCTAGAGGTTAATACGGTTCTAAGCAAGCAAC 1017
|||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||
Sbjct 961 TCGTCAAAAGCTTCTCCCAAGCTGAGTTTCTAGAGGCTAATACAGTTCTAAGCAAGCAAC 1020
Query 1018 AAGAGAATAGGCTGAAGCAGATGGGAGCGACGGTGAGGAACTCATGTGTGTATATGAAAC 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAGAGAATAGGCTGAAGCAGATGGGAGCGACGGTGAGGAACTCATGTGTGTATATGAAAA 1080
Query 1078 GGATGAAAAGGAAAGAGGAGCAGGAGAGAGCAATGGACAAATTTTCCGCGGAGCGGTTGT 1137
||||||||| ||||||||| || |||||||||||||||||| |||| ||||||||| |||
Sbjct 1081 GGATGAAAATGAAAGAGGAACAAGAGAGAGCAATGGACAAACTTTCGGCGGAGCGGCTGT 1140
Query 1138 CTGATCTGCTTTCCTTCCACCATATGATGGCTCGTCTTTGCTCCGATGCCATCAAGAGGA 1197
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1141 CTGATATGCTTTCCTTCCACCATATGATGGCTCGTCTTTGCTCCAATGCCATCAAGAGAA 1200
Query 1198 AACTACTAGAACCCGAAGC-CACAGATAGGACCATTGAATCCTCtttttttCTCAACTAT 1256
||||||||||||||||| | ||||||||||||||| || ||||| |||||||||||||||
Sbjct 1201 AACTACTAGAACCCGAA-CACACAGATAGGACCATAGAGTCCTCCTTTTTTCTCAACTAT 1259
Query 1257 TAGCTTTTATTGCAAAAACAGTGTTACACATAATAAGAAAACTAGCATTCCGTGCACTTA 1316
|||| ||||||||||||||||| ||||||| ||||||||||||||||||| ||| | |||
Sbjct 1260 TAGCCTTTATTGCAAAAACAGTTTTACACACAATAAGAAAACTAGCATTCTGTGAATTTA 1319
Query 1317 CAGAAGCTACCAACTGAAAA-CTTTTGACGGTATCCTATATGTATGGTTTCCTCAGGACA 1375
||||||||||||| |||||| |||||||| |||||||||||||| |||||||||| ||||
Sbjct 1320 CAGAAGCTACCAAATGAAAAACTTTTGACAGTATCCTATATGTAAGGTTTCCTCAAGACA 1379
Query 1376 GTAATCATAAAGAGTTCCTTTTT 1398
|||||||||||||||||||||||
Sbjct 1380 GTAATCATAAAGAGTTCCTTTTT 1402
> AT5G38200.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr5:15256276-15258755 FORWARD LENGTH=1699
Length=1699
Score = 159 bits (86), Expect = 5e-38
Identities = 212/271 (78%), Gaps = 16/271 (6%)
Strand=Plus/Plus
Query 648 ATGGAGATAATGGTGAACTCG-TATCACCATCAAGGTGTGAAGAGACTGGCGCAACGTTT 706
|||||||| |||| || | | ||||||||||||||||||||||||||||| ||| | ||
Sbjct 723 ATGGAGATTTTGGTTAA-TAGTTATCACCATCAAGGTGTGAAGAGACTGGCACAAAGATT 781
Query 707 TGCGCCCATGGCTTACGCTCCTGATGGTTTGATTGAAGGATTTTATGATCCGAAT-CGCT 765
|| ||| ||||||| ||| ||||||| || || ||||| ||||| |||||| || || |
Sbjct 782 TGTGCCAATGGCTTTTGCTGCTGATGGGTTAATGGAAGGTTTTTACGATCCGGATGCG-T 840
Query 766 ATGATCCA-AAGGAAGGTCAA-TTCTTGATGGGTCTGCAGTTTCATCCCGAGAGGATGAG 823
|| |||| ||| |||| || ||| | |||||| | ||||||||||| ||||| |||||
Sbjct 841 ATAATCCTGAAG-AAGGG-AAGTTCATAATGGGTTTACAGTTTCATCCAGAGAGAATGAG 898
Query 824 GCTTTCGGGCTCT-GATGAGTTTGATTATCCAGGCTG-CGCTT-TAGTTTATCAGGAGTT 880
| | | ||| ||||||||||||||||| || || | || | | ||||||||||||
Sbjct 899 ACAA-CATGATCTTGATGAGTTTGATTATCCTGGTTGTC-CTGCT-GCTTATCAGGAGTT 955
Query 881 TGTGAAAG-CTGTGATCGCATTTCAGAAGAA 910
|| |||| | ||||| || | ||||||||
Sbjct 956 TGC-AAAGGCGGTGATTGCGTACCAGAAGAA 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5