BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471698
Length=662
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15100.1 | Symbols: RHA2A | RING-H2 finger A2A | chr1:519342... 848 0.0
> AT1G15100.1 | Symbols: RHA2A | RING-H2 finger A2A | chr1:5193426-5194203
REVERSE LENGTH=778
Length=778
Score = 848 bits (459), Expect = 0.0
Identities = 628/701 (90%), Gaps = 45/701 (6%)
Strand=Plus/Plus
Query 1 AAGATGGGGCTACAAGGTCAGCTAAGTGACGTCTCTTCCGATTCAATCCCTCTTATGCTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 31 AAGATGGGGCTACAAGGTCAGCTAAGTGACGTCTCTTCCGATTCAATCCCTCTTATGCTC 90
Query 61 ATCTCTCTCCTCGCCGTCTTCATCAACCATGTCCGATCTTTCCTTCTCCGTCTCACCGCT 120
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||
Sbjct 91 CTCTCTCTCCTCGCCGTCTTCATCAACCATCTCCGATCTTTCCTCCTCCGTCTCACCTCT 150
Query 121 AAATCAAATCCTAATCTCCCCGTCGACGATGTCTCTATAGCATCGGGACTAGCCAACATA 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 151 AAATCAAATCCTAATCTCCCCGTAGACGATGTCTCTATAGCATCGGGACTAGCCAACATA 210
Query 181 ATCGTGCTCGCCGATCAGCTGAGCTTGAATCGGTTATTCTCGTACCGGTGCGGTGACGGA 240
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 211 ATCGTTCTCGCCGATCAGCTTAGTTTGAATCGGTTATTCTCGTACCGGTGCGGTGACGGA 270
Query 241 GGAGG-G-----TCCGATTGTGTGGTGTGTTTGTCGAAGCTTAA-GGAAGGTGAAGAGGT 293
|| || | ||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 271 GGTGGTGGCGGCTCCGATTGTGTTGTGTGTTTGTCGAAG-TTAAAGGAAGGTGAAGAGGT 329
Query 294 GAGGAAGCTGGAATGTCGACACGTGTACCACAAGAAGTGTTTAGAAGGATGGCTTCATCA 353
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 330 GAGGAAGCTGGAATGTCGACACGTGTTCCACAAGAAGTGTTTGGAAGGATGGCTTCATCA 389
Query 354 ACTCAATTTCACTTGTCCTCTTTGTAGATCTGCTTTGGTCTCCGATGATTGCGTCTCTAA 413
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 390 ATTCAATTTCACTTGTCCTCTTTGTAGATCTGCTTTGGTTTCCGATGATTGCGTCTCTAA 449
Query 414 AACGCAGCGCCGCGTTGGAAGGGATTTGATCTCGTGTTTCTCTCTCCACTGAGT------ 467
||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 450 AACGCAGCGTAGCGTTGGGAGGGATTTGATCTCGTGTTTCTCTCTCCACTGAGTAAAAGA 509
Query 468 T-------TGA------TCCGACGGCATCCGAGAGATCTACGGTGGCTGGCTGGTTCGGT 514
| ||| ||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 510 TCGGAAGATGAAGAAGATCCGATGGTATCTGAGAGATCTACGGTGGCTGGCTGGTTCGGT 569
Query 515 TTGACCACGCG--TGC-CCC-TTCTTTTCTCGGtttttttttttGAGGTCTCTCTCTTCT 570
||||||||||| ||| ||| |||||||||||| |||||||| ||||||||| ||||||
Sbjct 570 TTGACCACGCGCGTGCGCCCCTTCTTTTCTCGGATTTTTTTT--GAGGTCTCTTTCTTCT 627
Query 571 GTGAGAGGAGAGGACCtttt-t--gtttg-ttttttc----acttctcgatttcgttt-t 621
||||||||||| ||||||| | ||||| |||||| |||| ||||||| | | |
Sbjct 628 GTGAGAGGAGA--ACCTTTTGTTTGTTTGGTTTTTTTTTTTACTTTTCGATTTGGAATAT 685
Query 622 gtaaattttgaaatatacaaattttcACCGTTTGTATCTTT 662
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 686 GTAAATTTTGAA-TATACAAATTTTCACCGTTTGTATCTTT 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31999151639
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5