BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471699
Length=1770
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15110.2 | Symbols: | phosphatidyl serine synthase family p... 2623 0.0
> AT1G15110.2 | Symbols: | phosphatidyl serine synthase family
protein | chr1:5199018-5202175 FORWARD LENGTH=1824
Length=1824
Score = 2623 bits (1420), Expect = 0.0
Identities = 1698/1822 (93%), Gaps = 60/1822 (3%)
Strand=Plus/Plus
Query 1 AAAGAAAGGGAATCGTGAGGGG-AAGAAAGCAGAGTCGTTTTCAGATCGTGAAGCAGAAG 59
||| ||||||||||||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 1 AAAAAAAGGGAATCGTG-GGGGAAAGAAAGCAGAGTCGTTTTCAGATCGTGAA-TAGAAG 58
Query 60 CAGCAGAAGAAGCCGTATCTA--------------------T-TC-ctctctctctctct 97
|||||| |||||||||||||| | || ||||||||||||||
Sbjct 59 CAGCAGCAGAAGCCGTATCTATCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 118
Query 98 ctctACTTTGACCGTTCCTCTTCTTTTTATTCCTC--C-TCATC-A----TC-A--ACAT 146
|||||||||||||||||||||||||||||||| || | ||||| | || | || |
Sbjct 119 CTCTACTTTGACCGTTCCTCTTCTTTTTATTCATCAACATCATCGAGCTTTCTACTACTT 178
Query 147 -CA-T-CGAGC-T-TTCTACTTCTTCCTCTGATTCTCTCCCATTCCAAATCAATCTCTAG 201
| | | | | | |||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 GGATTCCTA-CTTCTTCTTCTTCTTCCTCTGATTCTCTCCCATTCC-AATCAATCTCTAG 236
Query 202 GGTTCTTCAGCAGCAATACTTCAGAAGCTGGGTTTGGCCATGGAACCCAATGGGTACAGG 261
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 237 GGTTCTTCTTCAGCAATACTTCAGAAGCTGGTTTTGGCCATGGAACCCAATGGGTACAGG 296
Query 262 AAAGAAAGAAGAAAGGAACAACATTTGGGGAGAATGAA---TGGTGGTGGTGATGTTGAG 318
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 297 AAAGAAAGAAGAAAGGAACAACATTTGGGGAGAATGAATGGTGGTGGTGGTGATGTTGAG 356
Query 319 AGTGATCTTGATCCATGGACTGCATGGGCTTATAAGCCTCGCACTATCTCTCTTCTCCTT 378
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 357 ACTGATCTTGATCCATGGACTGCATGGGCTTACAAGCCTCGCACTATCTCTCTTCTCCTT 416
Query 379 ATTGGCGCATGTTTTCTCATTTGGGCAAGTGGAGCTCTTGATCCTGAGAGCACCACATCT 438
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 417 ATTGGCGCTTGTTTTCTCATTTGGGCTAGTGGAGCTCTTGATCCTGACAGCACTACATCT 476
Query 439 GATGATCTTGTCACATCTGTCAAAAGGGGAGTGTGGGCTATGATCGCTGTCTTTCTTGCT 498
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GATGATCTTGTCACTTCTGTCAAAAGGGGAGTGTGGGCTATGATCGCTGTCTTTCTTGCT 536
Query 499 TACTCATTGCTCCAGGCCCCTTCAACGGTTCTAATCAGGCCCCATCCTGCAATCTGGCGC 558
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TACTCTTTGCTCCAGGCCCCTTCAACGGTTCTAATCAGGCCCCATCCTGCAATCTGGCGC 596
Query 559 TTAGTTCATGGAATGGCTGTCATTTACTTAGTTGCACTCACTTTTTTGCTCTTCCAGAGA 618
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 597 TTAGTTCATGGAATGGCCGTCATTTACTTAGTTGCACTTACTTTTTTGCTCTTTCAGAGA 656
Query 619 CGTGATGATGCCCGGCAGTTCATGAAGTTTCTCCACCCTGACCTTGGAATAGAACTTCCT 678
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CGTGATGATGCACGGCAGTTCATGAAGTTTCTCCACCCTGACCTTGGAATAGAACTTCCT 716
Query 679 GAGAAATCTTACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTT 738
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GAGAAATCATACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTT 776
Query 739 AAGAATCTTTATGACACAGTATTTGACGAGTTTTTCTTGGCTCACATCTTTGGATGGTGG 798
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 777 AAGAATCTTTATGACACAGTATTTGATGAGTTTTTCTTGGCTCACATCTTTGGTTGGTGG 836
Query 799 GGGAAAGCAATTCTGATTCGGAATCAGCCGCTTCTTTGGGTTCTTTCAATTGGTTTTGAG 858
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 837 GGGAAAGCAATTCTGATCCGGAACCAGCCGCTTCTTTGGGTGCTTTCAATTGGTTTTGAG 896
Query 859 TTATTGGAGCTTACCTTTCGGCATATGTTACCAAATTTCAACGAGTGCTGGTGGGACAGT 918
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTATTGGAGGTTACTTTTCGGCATATGTTACCAAATTTCAACGAGTGCTGGTGGGACAGT 956
Query 919 ATTGTTCTTGATATCTTGATATGCAACTGGTTTGGTATCTGGGCAGGAATGTATACAGTT 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ATTGTTCTTGATATCTTGATATGCAACTGGTTTGGTATCTGGGCAGGAATGTATACAGTT 1016
Query 979 CGCTACTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATT 1038
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CGATATTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATT 1076
Query 1039 GGCAAAGTGAAAAGGACATTGGGGCAGTTCACACCAGCACATTGGGACAAAGACGAGTGG 1098
|||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||
Sbjct 1077 GGCAAAGTGAAAAGGACACTGGGGCAGTTCACACCAGCTCACTGGGACAAAGACGAGTGG 1136
Query 1099 CATCCGCTGCAGGGACCTTGGCGTTTTATTCAAGTACTCACTCTCTGCATCGTCTTCTTG 1158
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 1137 CATCCGCTGCAGGGACCTTGGCGTTTTATTCAAGTACTCACTCTTTGCATCATATTCTTG 1196
Query 1159 ACAGTGGAGCTAAACACATTCTTTCTCAAGTTTAGCCTGTGGATCCCTCCTAGAAACCCA 1218
||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1197 ACAGTGGAGCTGAACACATTCTTTCTCAAGTTTAGCCTGTGGATCCCCCCTCGAAACCCA 1256
Query 1219 GTGATTCTCTATAGGCTGATCTTGTGGTGGCTCATAGCGATACCAACAACACGAGAATAC 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1257 GTGATTCTCTATAGGCTGATCTTGTGGTGGCTCATAGCGATACCAACAACACGGGAGTAC 1316
Query 1279 AATTCATATCTTCAAGACAGGAAACCTGTGAAAAAGGTGGGAGCATTCTGTTGGCTGTCG 1338
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AATTCATATCTTCAAGACAGAAAACCTGTGAAAAAGGTGGGAGCATTCTGTTGGCTGTCA 1376
Query 1339 CTGGGGATTTGCATAGTAGAACTTCTCATCTGCATCAAGTTTGGAAGTGG-A---TTGTA 1394
|||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1377 CTGGGGATATGCATAGTAGAACTTCTCATCTGCATCAAGTTTGGAAGTGGTAGGATTGTA 1436
Query 1395 CCCAACAGAAATGCCATTATGGGTAGTGACACTATGGGGAAGTGTGGGACTTGGACTTGT 1454
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CCCAACAGAAATGCCATTGTGGGTAGTGACACTATGGGGAAGTGTGGGACTTGGACTTGT 1496
Query 1455 GGCCTTCTTGCTGTGTTGGACATGGAAGATCCAGAAGATCCTCGCGCAAAAGAGACGCTA 1514
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1497 GGCCTTCTTGCTGTCTTGGACATGGAAGATCCAGAAGATCCTCGCGCAAAAGAGACGTTA 1556
Query 1515 AGCTCATGATTATTGCTGCGG-A-AGACGAGAGAGAAAGAGAGGTGAGACAGTGAAATGC 1572
||| ||| ||||||| ||| | | |||||||||||||| |||||||||||||||||||||
Sbjct 1557 AGCGCATCATTATTGTTGCAGCAGAGACGAGAGAGAAATAGAGGTGAGACAGTGAAATGC 1616
Query 1573 CATTGTGGGTTTTTT--GTAAATAGGGAGAAGAAGGAACAATGTAAATGCAATTTTCTTT 1630
|||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1617 CATTGTGGTTTTTTTTTGTAAATAGGGAGAAGAAGGAACGATGTAAATGCAATTTTCTTT 1676
Query 1631 AGGGGTAGTGTGTGATATTCAACATTTTACAGA-GCTTCCACCAATTCTTTCATGCATAA 1689
|||| |||||||||||||||||||||| || || | ||||| |||||||||||||||| |
Sbjct 1677 AGGGATAGTGTGTGATATTCAACATTT-AC-GAAGATTCCATCAATTCTTTCATGCATCA 1734
Query 1690 AAAATTTGCTTTCATCTTTGTTCTGCCTCCTCAATCTGACAAAACATGTCGGTTTGAATG 1749
||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1735 AAAGTT--CTTTCATCTTTGTTCTGCCCCCTCAATCTGACAAAACATGTTGGTTTGAATG 1792
Query 1750 TCAATTTTT-GTTACCATTCAC 1770
||||||||| ||||||||||||
Sbjct 1793 TCAATTTTTTGTTACCATTCAC 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87549750480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5